Rw2G028970

Transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
46505976 .. 46509231
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028970.1

Sequence Viewer

Length: 1437 bp
ATGGAAATGGAGGCAGACTCTCAGGAAAGAGAAGCTCTCCACCATGAAGCCCAGAACAAAAAGGAGAAGTTTTCTGTACAGGGTCTCTGGGATTTGCTATGGTCTCCCATAAATTGGTTCAAAATGCTCAGTAGTGAGTTGCATTGGAGCTTTGTGATCAGCGTGGTCATAGTTTATGGTATCAGTCAGGGTCTGAGTATGGGATTGAGTAGAATTAGCATACAGTATTACTTGAAAGATGAGCAGAAAGTGCAGCCCTCTGAGGCCCAAGTGTACCTGGGGATCATTCAAATTCCATGGATGGTTAAACCACTTTGGGGTCTTTTCACTGATACTCTTCCTATTCTTGGGTACCGCAGAAAGCCTTACTTTGTTTTTGCTGGTGTAATTGGGGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTTGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTCGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGTCAGTGAAAAGTTTCTGGATTCTGGAAAGGCTATGTGGACAACCCTAAAATGCAGCAGTGTATGGAGGCCTTGTTTGTACATGTATTTGTCACTTGCTTTGAGCTTGAGTGAGGTTGTTGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTCCTCCTCTACCAAAACTTCTTGAAAAGTTACCCTTTCCGTGATGTGCTTTTCTGGACTCAGTTACTCTATGGTATATCAGGATTGCTAGACTTGGTATTCGTGTTGCGCATAAATTTGAAACTCGGTTTACCAGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCAGATGATTGGGCGCCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGCGGGTATAGAAGGCACTTTCTTTGCTTTGCTCATGTCCATTGATCATGTTGGGATTCTCTCATCTACTTGGGCTGGAGGCCTCTTACTCCACATCTTGAATATCACACGGACACGGTTTGAAAATCTTTGGATGGCCATTTTGATTCGGAGCATATTGAGAATTTTGCCAATTGCACTACTTTTCTTAATACCTCGAACTGATCCAAACTCCTCTATTCTTCCATCTGAGATGTTGAGGACCAAAAAAGGTGATGATCTTGAGTCTGAAAATCTTGAAATGGCCTCCCTTGTCAATGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

53.18

Weight (kDa)

6.8

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 61 - 278 6.7e-08 Major Facilitator Superfamily
BT1 PF03092 63 - 446 1.6e-104 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1010
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 351, 1083
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 2 cut(s) 355, 1133
AclWI GGATC 2 cut(s) 290, 1328
AcoI YGGCCR 1 cut(s) 1266
AcsI RAATTY 3 cut(s) 291, 1015, 1293
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 1084
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 5 cut(s) 78, 275, 353, 818, 1110
AfiI CCNNNNNNNGG 6 cut(s) 114, 317, 347, 463, 897, 898
AflII CTTAAG 1 cut(s) 1088
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 9 cut(s) 121, 235, 290, 925, 1021, 1119, 1231, 1253, 1409
AjnI CCWGG 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 5 cut(s) 35, 150, 561, 723, 843
AluI AGCT 5 cut(s) 35, 150, 561, 723, 843
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 3 cut(s) 89, 108, 403
AlwI GGATC 2 cut(s) 290, 1328
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 6 cut(s) 264, 635, 806, 1210, 1266, 1413
ApeKI GCWGC 2 cut(s) 253, 792
ApoI RAATTY 3 cut(s) 291, 1015, 1293
ArsI GACNNNNNNTTYG 4 cut(s) 983, 1015, 1028, 1060
Asp700I GAANNNNTTC 1 cut(s) 750
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 2 cut(s) 1011, 1086
AspS9I GGNCC 5 cut(s) 265, 635, 861, 901, 1371
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 4 cut(s) 524, 560, 617, 1394
AvaII GGWCC 3 cut(s) 861, 901, 1371
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 1268
BanI GGYRCC 2 cut(s) 351, 1083
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 2 cut(s) 265, 804
BccI CCATC 5 cut(s) 295, 454, 544, 1258, 1363
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 2 cut(s) 156, 1174
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 3 cut(s) 89, 108, 403
BfaI CTAG 1 cut(s) 989
BfoI RGCGCY 1 cut(s) 1087
BfrI CTTAAG 1 cut(s) 1088
BglII AGATCT 1 cut(s) 433
BisI GCNGC 2 cut(s) 254, 793
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 2 cut(s) 255, 794
Bme1390I CCNGG 2 cut(s) 278, 672
Bme18I GGWCC 3 cut(s) 861, 901, 1371
BmgT120I GGNCC 5 cut(s) 265, 635, 861, 901, 1371
BmiI GGNNCC 5 cut(s) 353, 862, 889, 902, 1085
BmrFI CCNGG 2 cut(s) 278, 672
BmsI GCATC 3 cut(s) 493, 687, 1086
BplI GAGNNNNNCTC 3 cut(s) 34, 21, 53
BpmI CTGGAG 2 cut(s) 495, 1227
Bpu10I CCTNAGC 1 cut(s) 701
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 865, 1412
BpuMI CCSGG 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 1084
BsaI GGTCTC 2 cut(s) 89, 108
BsaJI CCNNGG 3 cut(s) 277, 296, 671
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 317, 347, 463, 897, 898
Bse1I ACTGG 2 cut(s) 423, 597
Bse21I CCTNAGG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 277, 296, 671
BseGI GGATG 5 cut(s) 306, 536, 699, 1101, 1269
BseLI CCNNNNNNNGG 6 cut(s) 114, 317, 347, 463, 897, 898
BseMII CTCAG 8 cut(s) 35, 142, 185, 252, 673, 974, 1085, 1350
BseNI ACTGG 2 cut(s) 423, 597
BseRI GAGGAG 2 cut(s) 896, 1333
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 2 cut(s) 265, 804
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 6 cut(s) 266, 637, 808, 1212, 1268, 1415
BshNI GGYRCC 2 cut(s) 351, 1083
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 2 cut(s) 430, 439
BslI CCNNNNNNNGG 6 cut(s) 114, 317, 347, 463, 897, 898
BsmAI GTCTC 3 cut(s) 89, 108, 403
BsmFI GGGAC 2 cut(s) 430, 439
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 6 cut(s) 266, 637, 808, 1212, 1268, 1415
Bso31I GGTCTC 2 cut(s) 89, 108
Bsp1286I GDGCHC 2 cut(s) 592, 883
Bsp1407I TGTACA 2 cut(s) 76, 816
Bsp143I GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 2 cut(s) 355, 1133
BspANI GGCC 6 cut(s) 266, 637, 808, 1212, 1268, 1415
BspCNI CTCAG 8 cut(s) 34, 141, 186, 253, 672, 973, 1084, 1351
BspLI GGNNCC 5 cut(s) 353, 862, 889, 902, 1085
BspPI GGATC 2 cut(s) 290, 1328
BspT107I GGYRCC 2 cut(s) 351, 1083
BspTI CTTAAG 1 cut(s) 1088
BspTNI GGTCTC 2 cut(s) 89, 108
BsrGI TGTACA 2 cut(s) 76, 816
BsrI ACTGG 2 cut(s) 423, 597
BssECI CCNNGG 3 cut(s) 277, 296, 671
BssMI GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
BssNI GRCGYC 1 cut(s) 1084
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 225, 524, 1248
Bst6I CTCTTC 3 cut(s) 342, 583, 1107
BstACI GRCGYC 1 cut(s) 1084
BstAFI CTTAAG 1 cut(s) 1088
BstAPI GCANNNNNTGC 1 cut(s) 250
BstAUI TGTACA 2 cut(s) 76, 816
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 5 cut(s) 306, 536, 699, 1101, 1269
BstH2I RGCGCY 1 cut(s) 1087
BstHHI GCGC 2 cut(s) 1011, 1086
BstKTI GATC 6 cut(s) 159, 285, 436, 1177, 1336, 1390
BstMAI GTCTC 3 cut(s) 89, 108, 403
BstMBI GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
BstMWI GCNNNNNNNGC 2 cut(s) 250, 479
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 2 cut(s) 556, 823
BstSCI CCNGG 2 cut(s) 276, 670
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 2 cut(s) 265, 804
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 6 cut(s) 266, 637, 808, 1212, 1268, 1415
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 5 cut(s) 306, 536, 699, 1101, 1269
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 5 cut(s) 327, 416, 590, 748, 802
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 1011, 1086
Cfr13I GGNCC 5 cut(s) 265, 635, 861, 901, 1371
Csp6I GTAC 5 cut(s) 77, 274, 352, 817, 1109
CviAII CATG 7 cut(s) 44, 297, 403, 553, 820, 1165, 1178
CviQI GTAC 5 cut(s) 77, 274, 352, 817, 1109
DinI GGCGCC 1 cut(s) 1085
DpnI GATC 6 cut(s) 158, 284, 435, 1176, 1335, 1389
DpnII GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 1266
Eam1104I CTCTTC 3 cut(s) 342, 583, 1107
EarI CTCTTC 3 cut(s) 342, 583, 1107
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 2 cut(s) 808, 1212
Eco31I GGTCTC 2 cut(s) 89, 108
Eco47I GGWCC 3 cut(s) 861, 901, 1371
Eco57I CTGAAG 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 639
EcoO109I RGGNCCY 2 cut(s) 635, 901
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 296
EgeI GGCGCC 1 cut(s) 1085
EheI GGCGCC 1 cut(s) 1085
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 7 cut(s) 47, 300, 406, 556, 823, 1168, 1181
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 919, 951
FaqI GGGAC 2 cut(s) 430, 439
FatI CATG 7 cut(s) 43, 296, 402, 552, 819, 1164, 1177
FauI CCCGC 1 cut(s) 1126
FbaI TGATCA 2 cut(s) 156, 1174
Fnu4HI GCNGC 2 cut(s) 254, 793
FokI GGATG 5 cut(s) 313, 523, 706, 1108, 1276
Fsp4HI GCNGC 2 cut(s) 254, 793
FspBI CTAG 1 cut(s) 989
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 2 cut(s) 1010, 1085
GluI GCNGC 2 cut(s) 254, 793
GsuI CTGGAG 2 cut(s) 495, 1227
HaeII RGCGCY 1 cut(s) 1087
HaeIII GGCC 6 cut(s) 266, 637, 808, 1212, 1268, 1415
HapII CCGG 1 cut(s) 671
HhaI GCGC 2 cut(s) 1011, 1086
Hin1I GRCGYC 1 cut(s) 1084
Hin1II CATG 7 cut(s) 47, 300, 406, 556, 823, 1168, 1181
Hin6I GCGC 2 cut(s) 1009, 1084
HinP1I GCGC 2 cut(s) 1009, 1084
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 8 cut(s) 17, 600, 707, 758, 958, 1186, 1276, 1394
HpaII CCGG 1 cut(s) 671
HphI GGTGA 4 cut(s) 524, 560, 617, 1394
Hpy166II GTNNAC 5 cut(s) 274, 569, 625, 777, 1031
Hpy188I TCNGA 7 cut(s) 195, 262, 1074, 1281, 1360, 1399, 1436
Hpy188III TCNNGA 9 cut(s) 23, 755, 762, 922, 955, 981, 1228, 1391, 1406
Hpy8I GTNNAC 5 cut(s) 274, 569, 625, 777, 1031
HpyAV CCTTC 1 cut(s) 1136
HpyCH4III ACNGT 3 cut(s) 225, 524, 1248
HpyCH4V TGCA 6 cut(s) 142, 253, 556, 718, 792, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 479
Hsp92I GRCGYC 1 cut(s) 1084
Hsp92II CATG 7 cut(s) 47, 300, 406, 556, 823, 1168, 1181
HspAI GCGC 2 cut(s) 1009, 1084
KasI GGCGCC 1 cut(s) 1083
KpnI GGTACC 1 cut(s) 355
Ksp22I TGATCA 2 cut(s) 156, 1174
Kzo9I GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
LmnI GCTCC 3 cut(s) 147, 893, 1281
Lsp1109I GCAGC 2 cut(s) 265, 804
LweI GCATC 3 cut(s) 493, 687, 1086
MaeI CTAG 1 cut(s) 989
MaeIII GTNAC 7 cut(s) 493, 511, 530, 548, 828, 929, 963
MalI GATC 6 cut(s) 158, 284, 435, 1176, 1335, 1389
MboI GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
MboII GAAGA 4 cut(s) 329, 570, 1094, 1343
MfeI CAATTG 2 cut(s) 498, 1302
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 592, 883
MlsI TGGCCA 1 cut(s) 1268
MluCI AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1015, 1293, 1302
MluNI TGGCCA 1 cut(s) 1268
Mly113I GGCGCC 1 cut(s) 1084
MlyI GAGTC 3 cut(s) 11, 952, 1403
Mox20I TGGCCA 1 cut(s) 1268
MroXI GAANNNNTTC 1 cut(s) 750
MscI TGGCCA 1 cut(s) 1268
MseI TTAA 3 cut(s) 306, 1089, 1319
MslI CAYNNNNRTG 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 1268
MspCI CTTAAG 1 cut(s) 1088
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 2 cut(s) 278, 672
MunI CAATTG 2 cut(s) 498, 1302
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 250, 479
NarI GGCGCC 1 cut(s) 1084
NciI CCSGG 1 cut(s) 672
NcoI CCATGG 1 cut(s) 296
NdeII GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
NlaIII CATG 7 cut(s) 47, 300, 406, 556, 823, 1168, 1181
NlaIV GGNNCC 5 cut(s) 353, 862, 889, 902, 1085
NmuCI GTSAC 4 cut(s) 493, 530, 548, 828
NsbI TGCGCA 1 cut(s) 1010
NspI RCATGY 2 cut(s) 556, 823
PceI AGGCCT 2 cut(s) 808, 1212
PciI ACATGT 1 cut(s) 819
PctI GAATGC 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 5 cut(s) 600, 707, 758, 1186, 1276
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 255, 794
PleI GAGTC 3 cut(s) 11, 952, 1402
PluTI GGCGCC 1 cut(s) 1087
PpsI GAGTC 3 cut(s) 11, 952, 1402
PpuMI RGGWCCY 1 cut(s) 901
PscI ACATGT 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 901
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 5 cut(s) 353, 862, 889, 902, 1085
PspPI GGNCC 5 cut(s) 265, 635, 861, 901, 1371
PspPPI RGGWCCY 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 5 cut(s) 78, 275, 353, 818, 1110
RsaNI GTAC 5 cut(s) 77, 274, 352, 817, 1109
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 306, 1089, 1319
SatI GCNGC 2 cut(s) 254, 793
Sau3AI GATC 6 cut(s) 156, 282, 433, 1174, 1333, 1387
Sau96I GGNCC 5 cut(s) 265, 635, 861, 901, 1371
SchI GAGTC 3 cut(s) 11, 952, 1403
ScrFI CCNGG 2 cut(s) 278, 672
SduI GDGCHC 2 cut(s) 592, 883
SfaNI GCATC 3 cut(s) 493, 687, 1086
SfoI GGCGCC 1 cut(s) 1085
SinI GGWCC 3 cut(s) 861, 901, 1371
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 3 cut(s) 844, 1088, 1391
SmoI CTYRAG 3 cut(s) 844, 1088, 1391
Sse9I AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1015, 1293, 1302
SseBI AGGCCT 2 cut(s) 808, 1212
SsiI CCGC 2 cut(s) 355, 1133
SspDI GGCGCC 1 cut(s) 1083
SspMI CTAG 1 cut(s) 989
StuI AGGCCT 2 cut(s) 808, 1212
StyD4I CCNGG 2 cut(s) 276, 670
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 225, 524, 1248
TaqI TCGA 1 cut(s) 1327
TasI AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1015, 1293, 1302
TatI WGTACW 3 cut(s) 76, 816, 1108
TfiI GAWTC 5 cut(s) 600, 707, 758, 1186, 1276
Tru1I TTAA 3 cut(s) 306, 1089, 1319
Tru9I TTAA 3 cut(s) 306, 1089, 1319
TscAI CASTG 5 cut(s) 334, 423, 597, 748, 802
TseFI GTSAC 4 cut(s) 493, 530, 548, 828
TseI GCWGC 2 cut(s) 253, 792
Tsp45I GTSAC 4 cut(s) 493, 530, 548, 828
TspDTI ATGAA 2 cut(s) 60, 1074
TspGWI ACGGA 2 cut(s) 929, 1255
TspRI CASTG 5 cut(s) 334, 423, 597, 748, 802
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 1088
VpaK11BI GGWCC 3 cut(s) 861, 901, 1371
XapI RAATTY 3 cut(s) 291, 1015, 1293
XceI RCATGY 2 cut(s) 556, 823
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.