Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Reverse (-)

33950313 .. 33951468

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0303300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTTCTTTTTCACCATCATCAAAGCATGCAATAGTTCCATTGCTTCCAGTTTCTTACCAGCCCAATTCCATAAAATCCCAGAGCAATAACACTCCTAGGTCATCATCAACTATGAAAGCGTCATGGTGGACACCAACCATTGCCACATTCATTCTTCTCATTTCCCTACCTTTTCTGTTTGTCGGCATCATTGCAGGTTCAAGAATTCGTCGAGAGCTTTCTCTAGGTCCCCAAGCTCCCCTTGTCCAAATAACTGCCTTATCCGTCCACAAATTTAATGTCTCCGAAACAAACTTGACAGCCGAATGGGATGTCAAGTTCAGAATGGAGAACCCAAACCTCGTTTCTTACATCTCTTTCGACCGCGTCGAGGGCTTCATTCTGTCCGAGGACACGGTGCCATTAGCCATAAAGTCGATCGAGCCGTTCGAGTTGACCATGAGGACAGAGAAAGAAGTGCATATGAGGGTGGCGATGAACAAGTGGGATGGCGAGCAGCCGGCGCTAAAACAAGGGGTGTTGGAGAAGATGATGAAGGATAGGGAAACAGGGGGAGTAAGGTTCGGCGTGCAGATGGCGATTTGGGCCACGTATAGGACTGGTTGGTTGTGGAAGAGGCAGCATGTGATTATGAATCCTCAATGCTTGGATTTGCCAGTGGCGTTTGTGCCTGGCACCACCACCATAGGTTTTGGAATTTTGATGGGTGCTGTGCCTAGGACGTGCTACGTTCCCATGCTAGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

250

Amino Acids

28.03

Weight (kDa)

9.3

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	400, 677
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	207, 275, 699
AfiI	CCNNNNNNNGG	2 cut(s)	373, 597
AgsI	TTSAA	1 cut(s)	204
AjiI	CACGTC	1 cut(s)	726
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	220, 239
AluI	AGCT	2 cut(s)	220, 239
Alw26I	GTCTC	1 cut(s)	289
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	499, 622
ApoI	RAATTY	3 cut(s)	207, 275, 699
ArsI	GACNNNNNNTTYG	4 cut(s)	267, 299, 300, 332
AspA2I	CCTAGG	2 cut(s)	98, 719
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	230, 588
AsuHPI	GGTGA	1 cut(s)	6
AsuNHI	GCTAGC	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	230
AvrII	CCTAGG	2 cut(s)	98, 719
BanI	GGYRCC	2 cut(s)	400, 677
BbvI	GCAGC	2 cut(s)	511, 634
BccI	CCATC	4 cut(s)	25, 485, 571, 700
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	4 cut(s)	99, 227, 720, 743
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	500, 623
BlnI	CCTAGG	2 cut(s)	98, 719
BlsI	GCNGC	2 cut(s)	501, 624
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	230, 588
BmiI	GGNNCC	3 cut(s)	232, 402, 679
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	98, 390, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 597
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	50, 607, 659
Bse3DI	GCAATG	3 cut(s)	41, 141, 192
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	98, 390, 719
BseGI	GGATG	2 cut(s)	319, 496
BseLI	CCNNNNNNNGG	2 cut(s)	373, 597
BseMI	GCAATG	3 cut(s)	41, 141, 192
BseNI	ACTGG	3 cut(s)	50, 607, 659
BseXI	GCAGC	2 cut(s)	511, 634
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	2 cut(s)	367, 423
BshFI	GGCC	1 cut(s)	590
BshNI	GGYRCC	2 cut(s)	400, 677
BsiEI	CGRYCG	2 cut(s)	367, 423
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	373, 597
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	590
Bsp143I	GATC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	232, 402, 679
BspMI	ACCTGC	1 cut(s)	188
BspOI	GCTAGC	1 cut(s)	746
BspT107I	GGYRCC	2 cut(s)	400, 677
BsrDI	GCAATG	3 cut(s)	41, 141, 192
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	50, 607, 659
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	98, 390, 719
BssMI	GATC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	98, 719
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	594
BstC8I	GCNNGC	5 cut(s)	30, 497, 504, 572, 744
BstF5I	GGATG	2 cut(s)	319, 496
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	420
BstMCI	CGRYCG	2 cut(s)	367, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 505, 587
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	2 cut(s)	32, 629
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	511, 634
BsuRI	GGCC	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	491
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	2 cut(s)	319, 496
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	5 cut(s)	30, 497, 504, 572, 744
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	230, 588
CseI	GACGC	2 cut(s)	111, 358
CviAII	CATG	5 cut(s)	29, 126, 442, 626, 739
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco130I	CCWWGG	2 cut(s)	98, 719
Eco47I	GGWCC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	98, 719
ErhI	CCWWGG	2 cut(s)	98, 719
FaeI	CATG	5 cut(s)	32, 129, 445, 629, 742
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	5 cut(s)	28, 125, 441, 625, 738
FauNDI	CATATG	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	500, 623
FokI	GGATG	2 cut(s)	326, 503
Fsp4HI	GCNGC	2 cut(s)	500, 623
FspBI	CTAG	4 cut(s)	99, 227, 720, 743
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	2 cut(s)	500, 623
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	2 cut(s)	111, 358
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	5 cut(s)	32, 129, 445, 629, 742
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	637
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	132, 271, 438
Hpy188I	TCNGA	3 cut(s)	289, 326, 391
Hpy188III	TCNNGA	2 cut(s)	204, 215
Hpy8I	GTNNAC	3 cut(s)	132, 271, 438
Hpy99I	CGWCG	2 cut(s)	216, 374
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	3 cut(s)	593, 725, 732
HpyCH4V	TGCA	4 cut(s)	32, 197, 463, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 505, 587
HpySE526I	ACGT	3 cut(s)	593, 725, 732
Hsp92II	CATG	5 cut(s)	32, 129, 445, 629, 742
HspAI	GCGC	1 cut(s)	506
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	511, 634
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	4 cut(s)	99, 227, 720, 743
MaeII	ACGT	3 cut(s)	593, 725, 732
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	3 cut(s)	149, 541, 628
MluCI	AATT	4 cut(s)	67, 207, 275, 699
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	353, 367, 385, 438, 462, 612, 651
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	2 cut(s)	279, 751
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	375, 505, 587
NaeI	GCCGGC	1 cut(s)	504
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	1 cut(s)	420
NgoMIV	GCCGGC	1 cut(s)	502
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	5 cut(s)	32, 129, 445, 629, 742
NlaIV	GGNNCC	3 cut(s)	232, 402, 679
NspI	RCATGY	2 cut(s)	32, 629
PaeI	GCATGC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	3 cut(s)	369, 425, 429
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	637
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	501, 624
Ple19I	CGATCG	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	594
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	232, 402, 679
PspPI	GGNCC	2 cut(s)	230, 588
PspPPI	RGGWCCY	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	368
PvuI	CGATCG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	279, 751
SatI	GCNGC	2 cut(s)	500, 623
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	2 cut(s)	230, 588
ScrFI	CCNGG	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	230
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	4 cut(s)	67, 207, 275, 699
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	4 cut(s)	99, 227, 720, 743
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	98, 719
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	3 cut(s)	596, 728, 735
TaqI	TCGA	6 cut(s)	214, 363, 372, 419, 423, 432
TasI	AATT	4 cut(s)	67, 207, 275, 699
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	2 cut(s)	279, 751
Tru9I	TTAA	2 cut(s)	279, 751
TscAI	CASTG	1 cut(s)	666
TseI	GCWGC	2 cut(s)	499, 622
TspDTI	ATGAA	6 cut(s)	131, 142, 370, 494, 551, 650
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	666
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	3 cut(s)	207, 275, 699
XceI	RCATGY	2 cut(s)	32, 629
XmaJI	CCTAGG	2 cut(s)	98, 719
XspI	CTAG	4 cut(s)	99, 227, 720, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.