Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Reverse (-)

22331899 .. 22337211

Gene Structure 5313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGCAAAAGGGTGATATGAGTTTAGCTGCTGTGTTAATACCCATGTGGGTCTTAACCACCGCTTTGATTGTGACCATAATTGAGGCCAGGCCAGACCCAACAGCTTCCACTACTTCTGCCCACATTATGCTACTTGAGGAACAACCCATTGCTCACTTTTCTTCAAAAATGGAAGCTCAATCTCCAGGAGTTCCTGAGGTTAGAGTAATTCACCATCAAGATTTGAACAAGAGCATTCTAATAGCACTGATTGTTGCTTCCACACTGCTTGTTGGAATTCTTCTGTTCCTTTCATGTTGTTGGATCTATAGACAGAAATTGTTGAACCACTCCAATGGGAAAAGGCAAAAGACAAACGAGGTTTCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGAGGTTGGGGAATAGGAAGGGCTCGGTTGTTGTATTCAGTTATCAATTGCTGGAAGCTGCAACAGACAAGTTCAGTGAAAGTAATGTTTTGGGCGAGGGTAGTTCTGGACCTGTTTACAGAGCTAGTTTTGATGGCAAATTCATTGCAGCTGTTAAGAGAGTAAACAGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATCCTTCATCAAAACATCATCAAACTTTTGGGTTATTGTGTTCATGGAAAGACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCATTGGAAACTCAATTGTATGGACCTAATCATGGATCATTTTTGACATGGCATCTGCGGTTGAAAATAGCTGTTGATGTTGCCAGAGGATTGGAATATCTTCATGAGCACTGCCATCCGCCTGTGGTGCATAGAGACCTGAAGTCATCTAACATTCTTCTGGATTCCAATTTTAATGCTAAGCTTTCAGACTTTGGTGCTACTGTCACGTCGGGGATGAAGAGTAAGGAGAGCATAAAGCTATCAGGAAATTTGGGCTGTGTAGCACCAGAGTATAATTTGGATGGTAAGTTAACGGACAAAAGTGATGTCTATGCTTTCGGAGTAGTTCTTTTGGAACTCTTGATGGGAAGAAAGTTGGTGGAACATAAAGCAATAGATGAATCCCAATCTATTATCACATGGGCCATGCCCCAGCTCACTGACAGATCAAGGCTTCCCAACATTGTGGATCGCGTGATAAAAGATACCATGGATTTAAAACACTTGTACCAGGTTGCTGCTGTGGCAGTACTATGTGTGCAACCTGAACCAAGTTATCGACCTTTAATGACAGATGTACTGCACTCGCTAATCCCTCTTGTGCCTGTGGATCTTGGAGGGTCGCTGAGAATTGCAGATTACATACCCTCTGTTTCAGCCGAACCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

459

Amino Acids

50.74

Weight (kDa)

6.97

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	162 - 427	6.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	164 - 429	6.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1176
AciI	CCGC	3 cut(s)	60, 778, 839
AclWI	GGATC	4 cut(s)	311, 763, 1179, 1320
AcsI	RAATTY	5 cut(s)	276, 398, 548, 602, 970
AcuI	CTGAAG	1 cut(s)	881
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	1211, 1233, 1281
AfiI	CCNNNNNNNGG	1 cut(s)	752
AgsI	TTSAA	6 cut(s)	165, 226, 325, 366, 398, 784
AhdI	GACNNNNNGTC	1 cut(s)	862
AjiI	CACGTC	1 cut(s)	930
AjnI	CCWGG	3 cut(s)	86, 184, 1212
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
Alw21I	GWGCWC	2 cut(s)	388, 831
Alw26I	GTCTC	1 cut(s)	849
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	4 cut(s)	311, 763, 1179, 1320
AoxI	GGCC	3 cut(s)	84, 89, 1125
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	4 cut(s)	26, 467, 557, 1220
ApoI	RAATTY	5 cut(s)	276, 398, 548, 602, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	1014, 1046
Asp700I	GAANNNNTTC	1 cut(s)	819
AspS9I	GGNCC	3 cut(s)	518, 743, 1125
AsuHPI	GGTGA	3 cut(s)	23, 203, 628
AvaII	GGWCC	2 cut(s)	518, 743
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	388
BaeI	ACNNNNGTAYC	2 cut(s)	1193, 1226
BanII	GRGCYC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	388, 831
BbvI	GCAGC	4 cut(s)	13, 454, 569, 1207
BccI	CCATC	5 cut(s)	222, 536, 843, 998, 1060
BciT130I	CCWGG	3 cut(s)	88, 186, 1214
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	4 cut(s)	27, 468, 558, 1221
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	4 cut(s)	28, 469, 559, 1222
BmcAI	AGTACT	1 cut(s)	1233
Bme1390I	CCNGG	3 cut(s)	88, 186, 1214
Bme18I	GGWCC	2 cut(s)	518, 743
BmeRI	GACNNNNNGTC	1 cut(s)	862
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	518, 743, 1125
BmrFI	CCNGG	3 cut(s)	88, 186, 1214
BmsI	GCATC	3 cut(s)	580, 699, 781
BpmI	CTGGAG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	155, 430
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	849
BsaJI	CCNNGG	1 cut(s)	1191
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	626
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	147, 552
BseBI	CCWGG	3 cut(s)	88, 186, 1214
BseDI	CCNNGG	1 cut(s)	1191
BseGI	GGATG	4 cut(s)	595, 835, 942, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	2 cut(s)	147, 552
BseMII	CTCAG	2 cut(s)	186, 1319
BseNI	ACTGG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	4 cut(s)	13, 454, 569, 1207
BseYI	CCCAGC	1 cut(s)	1134
BsgI	GTGCAG	1 cut(s)	1268
Bsh1236I	CGCG	1 cut(s)	1176
BshFI	GGCC	3 cut(s)	86, 91, 1127
BsiHKAI	GWGCWC	2 cut(s)	388, 831
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	1 cut(s)	849
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	86, 91, 1127
Bso31I	GGTCTC	1 cut(s)	849
Bsp1286I	GDGCHC	3 cut(s)	388, 434, 831
Bsp143I	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
Bsp1720I	GCTNAGC	1 cut(s)	900
Bsp19I	CCATGG	1 cut(s)	1191
BspACI	CCGC	3 cut(s)	60, 778, 839
BspANI	GGCC	3 cut(s)	86, 91, 1127
BspCNI	CTCAG	2 cut(s)	187, 1320
BspFNI	CGCG	1 cut(s)	1176
BspHI	TCATGA	1 cut(s)	823
BspPI	GGATC	4 cut(s)	311, 763, 1179, 1320
BspTNI	GGTCTC	1 cut(s)	849
BsrDI	GCAATG	2 cut(s)	147, 552
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	1191
BssMI	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	1191
Bst2UI	CCWGG	3 cut(s)	88, 186, 1214
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	1 cut(s)	935
BstACI	GRCGYC	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	195, 900, 1328
BstDSI	CCRYGG	1 cut(s)	1191
BstF5I	GGATG	4 cut(s)	595, 835, 942, 1009
BstFNI	CGCG	1 cut(s)	1176
BstKTI	GATC	5 cut(s)	306, 758, 1151, 1174, 1315
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
BstMWI	GCNNNNNNNGC	2 cut(s)	847, 1226
BstNI	CCWGG	3 cut(s)	88, 186, 1214
BstSCI	CCNGG	3 cut(s)	86, 184, 1212
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	1176
BstV1I	GCAGC	4 cut(s)	13, 454, 569, 1207
BstX2I	RGATCY	2 cut(s)	303, 1312
BstXI	CCANNNNNNTGG	3 cut(s)	335, 811, 1168
BstYI	RGATCY	2 cut(s)	303, 1312
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	86, 91, 1127
BtgI	CCRYGG	1 cut(s)	1191
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	4 cut(s)	595, 835, 942, 1009
BtsI	GCAGTG	2 cut(s)	263, 829
BtsIMutI	CAGTG	5 cut(s)	245, 263, 490, 829, 1140
CciI	TCATGA	1 cut(s)	823
Cfr13I	GGNCC	3 cut(s)	518, 743, 1125
CseI	GACGC	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	1212
Csp6I	GTAC	3 cut(s)	1210, 1232, 1280
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	9 cut(s)	43, 294, 677, 752, 768, 824, 1122, 1129, 1192
CviQI	GTAC	3 cut(s)	1210, 1232, 1280
DdeI	CTNAG	3 cut(s)	195, 900, 1328
DpnI	GATC	5 cut(s)	305, 757, 1150, 1173, 1314
DpnII	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
DraI	TTTAAA	1 cut(s)	1200
DriI	GACNNNNNGTC	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	935
Eam1105I	GACNNNNNGTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	1191
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	849
Eco47I	GGWCC	2 cut(s)	518, 743
Eco57I	CTGAAG	1 cut(s)	881
Eco81I	CCTNAGG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	3 cut(s)	86, 184, 1212
EcoT14I	CCWWGG	1 cut(s)	1191
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	1191
FaeI	CATG	9 cut(s)	46, 297, 680, 755, 771, 827, 1125, 1132, 1195
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	9 cut(s)	42, 293, 676, 751, 767, 823, 1121, 1128, 1191
Fnu4HI	GCNGC	4 cut(s)	27, 468, 558, 1221
FokI	GGATG	4 cut(s)	602, 822, 949, 1016
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	4 cut(s)	27, 468, 558, 1221
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	4 cut(s)	27, 468, 558, 1221
GsaI	CCCAGC	1 cut(s)	1138
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	86, 91, 1127
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	9 cut(s)	46, 297, 680, 755, 771, 827, 1125, 1132, 1195
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	2 cut(s)	884, 1103
HpaI	GTTAAC	1 cut(s)	1014
HphI	GGTGA	3 cut(s)	23, 203, 628
Hpy166II	GTNNAC	5 cut(s)	386, 526, 574, 619, 1014
Hpy188I	TCNGA	2 cut(s)	910, 1043
Hpy188III	TCNNGA	7 cut(s)	194, 218, 516, 824, 881, 966, 1063
Hpy8I	GTNNAC	5 cut(s)	386, 526, 574, 619, 1014
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	3 cut(s)	421, 647, 1377
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	1 cut(s)	929
HpyCH4V	TGCA	9 cut(s)	4, 386, 470, 557, 712, 850, 1243, 1285, 1337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	847, 1226
HpyF3I	CTNAG	3 cut(s)	195, 900, 1328
HpySE526I	ACGT	1 cut(s)	929
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	9 cut(s)	46, 297, 680, 755, 771, 827, 1125, 1132, 1195
KspAI	GTTAAC	1 cut(s)	1014
Kzo9I	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
Lsp1109I	GCAGC	4 cut(s)	13, 454, 569, 1207
LweI	GCATC	3 cut(s)	580, 699, 781
MabI	ACCWGGT	1 cut(s)	1212
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	929
MaeIII	GTNAC	2 cut(s)	70, 925
MalI	GATC	5 cut(s)	305, 757, 1150, 1173, 1314
MboI	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
MboII	GAAGA	6 cut(s)	153, 272, 812, 869, 952, 1083
MfeI	CAATTG	2 cut(s)	455, 734
MflI	RGATCY	2 cut(s)	303, 1312
MhlI	GDGCHC	3 cut(s)	388, 434, 831
MmeI	TCCRAC	2 cut(s)	253, 281
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	8 cut(s)	35, 53, 402, 564, 894, 1013, 1199, 1268
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	88, 186, 1214
MunI	CAATTG	2 cut(s)	455, 734
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	3 cut(s)	88, 186, 1214
MvnI	CGCG	1 cut(s)	1176
MwoI	GCNNNNNNNGC	2 cut(s)	847, 1226
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
NlaIII	CATG	9 cut(s)	46, 297, 680, 755, 771, 827, 1125, 1132, 1195
NmuCI	GTSAC	2 cut(s)	70, 925
PagI	TCATGA	1 cut(s)	823
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	2 cut(s)	884, 1103
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	28, 469, 559, 1222
Psp6I	CCWGG	3 cut(s)	86, 184, 1212
PspFI	CCCAGC	1 cut(s)	1134
PspGI	CCWGG	3 cut(s)	86, 184, 1212
PspPI	GGNCC	3 cut(s)	518, 743, 1125
PsuI	RGATCY	2 cut(s)	303, 1312
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	3 cut(s)	1211, 1233, 1281
RsaNI	GTAC	3 cut(s)	1210, 1232, 1280
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	8 cut(s)	35, 53, 402, 564, 894, 1013, 1199, 1268
SatI	GCNGC	4 cut(s)	27, 468, 558, 1221
Sau3AI	GATC	5 cut(s)	303, 755, 1148, 1171, 1312
Sau96I	GGNCC	3 cut(s)	518, 743, 1125
ScaI	AGTACT	1 cut(s)	1233
ScrFI	CCNGG	3 cut(s)	88, 186, 1214
SduI	GDGCHC	3 cut(s)	388, 434, 831
SexAI	ACCWGGT	1 cut(s)	1212
SfaNI	GCATC	3 cut(s)	580, 699, 781
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	518, 743
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	134, 409
SmoI	CTYRAG	2 cut(s)	134, 409
SsiI	CCGC	3 cut(s)	60, 778, 839
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	3 cut(s)	86, 184, 1212
StyI	CCWWGG	1 cut(s)	1191
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	1 cut(s)	932
TaqI	TCGA	1 cut(s)	1261
TatI	WGTACW	2 cut(s)	1231, 1279
TfiI	GAWTC	2 cut(s)	884, 1103
Tru1I	TTAA	8 cut(s)	35, 53, 402, 564, 894, 1013, 1199, 1268
Tru9I	TTAA	8 cut(s)	35, 53, 402, 564, 894, 1013, 1199, 1268
TscAI	CASTG	5 cut(s)	252, 270, 490, 836, 1147
TseFI	GTSAC	2 cut(s)	70, 925
TseI	GCWGC	4 cut(s)	26, 467, 557, 1220
Tsp45I	GTSAC	2 cut(s)	70, 925
TspDTI	ATGAA	8 cut(s)	282, 541, 629, 665, 717, 812, 953, 1116
TspGWI	ACGGA	1 cut(s)	1031
TspRI	CASTG	5 cut(s)	252, 270, 490, 836, 1147
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	518, 743
XapI	RAATTY	5 cut(s)	276, 398, 548, 602, 970
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.