Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Forward (+)

21166237 .. 21171806

Gene Structure 5570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCCTTCCATCTAAGTCATTTTACTTTTCTCTTGGTGGTGTCAAGTGAGATTGTTGGAGAAGAAGCTTCCACCACTTCTGGCCACATTATGCTACTTGAGGAACAACCCATTACTCATTCTTCTGCAAAAATGGAAGCTCAATCTCCAGGAGTCCCTGAGGTTAGAGTAGTTCACCATCAAGATTTGAACAAGAGCATTCTGATAGCACTCATTGTTGCTTCCACACTCCTTGTTGGAATTCTTCTGTTCCTGTCATGTTGTTGGATCTATAGACAGAAAATGTCGAAACACTCTATTGGGAAAAGGCAAAAGACAAACGAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTTCGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAAACGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTCGGCATCAAAACATCATCAAACTTTTGGGTTACTGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGCCGGCACATGTCAAACAACCGAGCATTGTACAAACAGAAACTACATTCATACAGATGGCAACACCATACCTGCTTCCTCCCTTGCTTTGAAAAACGAACTCTCTTCTCTCTCTAAGAAAATTGATTTGAGAGTTCGATTCAGATCTATAGTCGCCAGAACTCAATTTCAACCTCTCACGAGACCAACCTCCGCCTCCGAAGCTACAACCACTTTTTTCATAGTCACACCACGCTTTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

316

Amino Acids

35.4

Weight (kDa)

9.25

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	150 - 242	7.6e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	153 - 237	2e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	949
Acc36I	ACCTGC	1 cut(s)	784
AciI	CCGC	1 cut(s)	897
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	1 cut(s)	736
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	5 cut(s)	190, 362, 412, 796, 875
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	5 cut(s)	68, 140, 431, 524, 908
AluI	AGCT	5 cut(s)	68, 140, 431, 524, 908
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	880
Alw44I	GTGCAC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	82
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	431, 521
ApoI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	167, 479, 592
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	84
BauI	CACGAG	1 cut(s)	883
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	418, 533
BccI	CCATC	4 cut(s)	18, 186, 500, 755
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	880
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	271, 852
BfuAI	ACCTGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	848
BisI	GCNGC	2 cut(s)	432, 522
BlsI	GCNGC	2 cut(s)	433, 523
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	327, 685
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	3 cut(s)	544, 613, 663
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	847
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	880
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	590
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	847
BseBI	CCWGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	847
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	418, 533
BshFI	GGCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	708
BslFI	GGGAC	2 cut(s)	140, 349
BsmAI	GTCTC	1 cut(s)	880
BsmFI	GGGAC	2 cut(s)	140, 349
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	880
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	267, 848
BspACI	CCGC	1 cut(s)	897
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	327, 685
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	880
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	707
BssMI	GATC	2 cut(s)	267, 848
BssNI	GRCGYC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	883
Bst2BI	CACGAG	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	814
BstACI	GRCGYC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	14, 159, 819
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	2 cut(s)	270, 851
BstMAI	GTCTC	1 cut(s)	880
BstMBI	GATC	2 cut(s)	267, 848
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	271, 852
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	418, 533
BstX2I	RGATCY	2 cut(s)	267, 848
BstYI	RGATCY	2 cut(s)	267, 848
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	454
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	735
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	3 cut(s)	258, 641, 714
CviJI	RGCY	8 cut(s)	68, 84, 140, 431, 497, 524, 684, 908
CviKI_1	RGCY	8 cut(s)	68, 84, 140, 431, 497, 524, 684, 908
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	3 cut(s)	14, 159, 819
DpnI	GATC	2 cut(s)	269, 850
DpnII	GATC	2 cut(s)	267, 848
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
EciI	GGCGGA	1 cut(s)	886
Eco31I	GGTCTC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	261, 644, 717
FaqI	GGGAC	2 cut(s)	140, 349
FatI	CATG	3 cut(s)	257, 640, 713
Fnu4HI	GCNGC	2 cut(s)	432, 522
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	432, 522
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	432, 522
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	708
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	261, 644, 717
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	2 cut(s)	153, 843
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	3 cut(s)	167, 479, 592
Hpy166II	GTNNAC	5 cut(s)	175, 350, 490, 538, 583
Hpy188I	TCNGA	4 cut(s)	204, 482, 848, 904
Hpy188III	TCNNGA	2 cut(s)	182, 883
Hpy8I	GTNNAC	5 cut(s)	175, 350, 490, 538, 583
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4V	TGCA	5 cut(s)	128, 350, 434, 521, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	3 cut(s)	14, 159, 819
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	261, 644, 717
KroI	GCCGGC	1 cut(s)	707
KroNI	GCCGGC	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	267, 848
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	2 cut(s)	418, 533
LweI	GCATC	3 cut(s)	544, 613, 663
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	629, 928
MalI	GATC	2 cut(s)	269, 850
MboI	GATC	2 cut(s)	267, 848
MboII	GAAGA	4 cut(s)	74, 114, 236, 801
MfeI	CAATTG	2 cut(s)	419, 698
MflI	RGATCY	2 cut(s)	267, 848
MhlI	GDGCHC	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	37, 217, 245
MnlI	CCTC	9 cut(s)	94, 154, 316, 463, 571, 793, 888, 904, 910
Mox20I	TGGCCA	1 cut(s)	84
MroNI	GCCGGC	1 cut(s)	707
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	366, 528
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	2 cut(s)	419, 698
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	905
NaeI	GCCGGC	1 cut(s)	709
NdeII	GATC	2 cut(s)	267, 848
NgoMIV	GCCGGC	1 cut(s)	707
NlaIII	CATG	3 cut(s)	261, 644, 717
NlaIV	GGNNCC	2 cut(s)	327, 685
NmuCI	GTSAC	1 cut(s)	928
NspI	RCATGY	1 cut(s)	717
PciI	ACATGT	1 cut(s)	713
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	843
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	433, 523
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PscI	ACATGT	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	949
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	327, 685
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	2 cut(s)	267, 848
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	2 cut(s)	366, 528
SatI	GCNGC	2 cut(s)	432, 522
Sau3AI	GATC	2 cut(s)	267, 848
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	3 cut(s)	544, 613, 663
SfcI	CTRYAG	2 cut(s)	271, 852
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	1 cut(s)	897
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	635
TaqI	TCGA	2 cut(s)	287, 841
TatI	WGTACW	1 cut(s)	734
TfiI	GAWTC	1 cut(s)	843
Tru1I	TTAA	2 cut(s)	366, 528
Tru9I	TTAA	2 cut(s)	366, 528
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	2 cut(s)	431, 521
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	5 cut(s)	505, 629, 681, 743, 913
TspRI	CASTG	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
XceI	RCATGY	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.