Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017323.1

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Forward (+)

45542 .. 49169

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017323.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgagttttgctgctgtgttaatacccatgtgggtcttaaccaccgctctgattgtaaccataattgagggcaggccagacccaacagcttccaccacttctggccacattatgctacttgaggaacaacccattactcactcttctgcaaaaatggaagctcaatctccaggagtccctgaggttagagtagttcaccatcaagatttgaacaagagcattctgatagcactcattgttgcttccacactccttgttggaattcttctgttcctgtcatgttgttggatctatagacagaaaatgtcgaaacactctattgggaaaaggcaaaagacaaacgaggttccaatagggacgccattgagtgcacttatggttgaatttaattccttgatgttggggaatagaaagggttcggttgttgtattcaattatcaattgctggaagctgcaacaaacaagttcagtgaaagtaatattttgggtgagggtagtttgcagaatgaggtgaactggttgggaaaaattcggcatcaaaacatcatcaaacttttgggttactgtgttcatggaaaaacaaggtttcttgtgtatgaaatgatgcagaatggctccttacaaactcaattgtatggacccagtcatggatcagctttgacatggcatctgcggttgaaaatagctgttgatgttgccaggggattggaatatcttcatgagcactgcaatccgcctgcggtgcatagagacctgaagtcatctaacattcttctcgattccaattttaatgctaagctttcagattttggtcttactgtcacttcgggattgaagagtaaggagaacataaagctgtcaggaaatttgggctgtgtagcaccagaatataatttggatggtaagttaacggacaaaagtgatgtctatgctttcggagtagttctcttggagctcttgatgggaagaaagttggtggaacataaagcagcagatgaatcccaatctattatcacatgggccatgccccagctcactgacagatcaaggcttccaaacattgtggatcgcgtgataaaagataccatggatttaaaacacttataccaggttgctgccgtggcagtattatgtgtgcaaccagaaccaagttatcgacctttgataacggatgtactgcactcgctaatccctcttgtacctatggatcttggagggtcactgagaattgcagactgcataccctctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

417

Amino Acids

46.04

Weight (kDa)

8.1

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	1071
AciI	CCGC	4 cut(s)	45, 673, 734, 740
AclWI	GGATC	4 cut(s)	296, 658, 1074, 1215
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	4 cut(s)	261, 383, 528, 865
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	359
AfaI	GTAC	2 cut(s)	1176, 1200
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	5 cut(s)	211, 383, 433, 679, 835
AhdI	GACNNNNNGTC	1 cut(s)	757
AjnI	CCWGG	3 cut(s)	169, 698, 1107
AluBI	AGCT	9 cut(s)	89, 161, 452, 656, 686, 799, 856, 955, 1033
AluI	AGCT	9 cut(s)	89, 161, 452, 656, 686, 799, 856, 955, 1033
Alw21I	GWGCWC	3 cut(s)	373, 726, 957
Alw26I	GTCTC	1 cut(s)	744
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	4 cut(s)	296, 658, 1074, 1215
AoxI	GGCC	3 cut(s)	74, 103, 1020
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	4 cut(s)	11, 452, 989, 1115
ApoI	RAATTY	4 cut(s)	261, 383, 528, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	909, 941
Asp700I	GAANNNNTTC	2 cut(s)	415, 714
AspS9I	GGNCC	2 cut(s)	638, 1020
AsuHPI	GGTGA	3 cut(s)	188, 500, 523
AvaII	GGWCC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	957
Bbv12I	GWGCWC	3 cut(s)	373, 726, 957
BbvI	GCAGC	3 cut(s)	439, 1001, 1102
BccI	CCATC	3 cut(s)	207, 893, 955
BceAI	ACGGC	1 cut(s)	1103
BciT130I	CCWGG	3 cut(s)	171, 700, 1109
BcoDI	GTCTC	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	4 cut(s)	12, 453, 990, 1116
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	4 cut(s)	13, 454, 991, 1117
Bme1390I	CCNGG	3 cut(s)	171, 700, 1109
Bme18I	GGWCC	1 cut(s)	638
BmeRI	GACNNNNNGTC	1 cut(s)	757
BmgT120I	GGNCC	2 cut(s)	638, 1020
BmiI	GGNNCC	3 cut(s)	348, 616, 640
BmrFI	CCNGG	3 cut(s)	171, 700, 1109
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	3 cut(s)	544, 594, 676
BmuI	ACTGGG	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	930, 962
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	699, 1086, 1119
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	521, 642
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	171, 700, 1109
BseDI	CCNNGG	3 cut(s)	699, 1086, 1119
BseGI	GGATG	2 cut(s)	904, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	171, 1214
BseNI	ACTGG	2 cut(s)	521, 642
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	439, 1001, 1102
BseYI	CCCAGC	1 cut(s)	1029
BsgI	GTGCAG	1 cut(s)	1163
Bsh1236I	CGCG	1 cut(s)	1071
BshFI	GGCC	3 cut(s)	76, 105, 1022
BsiHKAI	GWGCWC	3 cut(s)	373, 726, 957
BslFI	GGGAC	2 cut(s)	161, 370
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	744
BsmFI	GGGAC	2 cut(s)	161, 370
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	76, 105, 1022
Bso31I	GGTCTC	1 cut(s)	744
Bsp1286I	GDGCHC	3 cut(s)	373, 726, 957
Bsp143I	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp19I	CCATGG	1 cut(s)	1086
BspACI	CCGC	4 cut(s)	45, 673, 734, 740
BspANI	GGCC	3 cut(s)	76, 105, 1022
BspCNI	CTCAG	2 cut(s)	172, 1215
BspFNI	CGCG	1 cut(s)	1071
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	348, 616, 640
BspPI	GGATC	4 cut(s)	296, 658, 1074, 1215
BspTNI	GGTCTC	1 cut(s)	744
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	521, 642
BssECI	CCNNGG	3 cut(s)	699, 1086, 1119
BssMI	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
BssNI	GRCGYC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	3 cut(s)	171, 700, 1109
Bst4CI	ACNGT	2 cut(s)	566, 820
Bst6I	CTCTTC	2 cut(s)	148, 830
BstACI	GRCGYC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	74, 738
BstDEI	CTNAG	3 cut(s)	180, 795, 1223
BstDSI	CCRYGG	2 cut(s)	1086, 1119
BstF5I	GGATG	2 cut(s)	904, 1177
BstFNI	CGCG	1 cut(s)	1071
BstKTI	GATC	5 cut(s)	291, 653, 1046, 1069, 1210
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
BstMWI	GCNNNNNNNGC	2 cut(s)	742, 1121
BstNI	CCWGG	3 cut(s)	171, 700, 1109
BstSCI	CCNGG	3 cut(s)	169, 698, 1107
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	1071
BstV1I	GCAGC	3 cut(s)	439, 1001, 1102
BstX2I	RGATCY	2 cut(s)	288, 1207
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	2 cut(s)	288, 1207
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	76, 105, 1022
BtgI	CCRYGG	2 cut(s)	1086, 1119
BtsCI	GGATG	2 cut(s)	904, 1177
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	4 cut(s)	475, 724, 1035, 1220
Cac8I	GCNNGC	2 cut(s)	74, 738
CciI	TCATGA	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	638, 1020
CseI	GACGC	1 cut(s)	367
CsiI	ACCWGGT	1 cut(s)	1107
Csp6I	GTAC	2 cut(s)	1175, 1199
CspCI	CAANNNNNGTGG	4 cut(s)	235, 270, 1044, 1079
CviAII	CATG	9 cut(s)	28, 279, 572, 647, 663, 719, 1017, 1024, 1087
CviQI	GTAC	2 cut(s)	1175, 1199
DdeI	CTNAG	3 cut(s)	180, 795, 1223
DpnI	GATC	5 cut(s)	290, 652, 1045, 1068, 1209
DpnII	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
DraI	TTTAAA	1 cut(s)	1095
DriI	GACNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	148, 830
Eam1105I	GACNNNNNGTC	1 cut(s)	757
EarI	CTCTTC	2 cut(s)	148, 830
EciI	GGCGGA	1 cut(s)	723
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	1 cut(s)	1086
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	776
Eco81I	CCTNAGG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	3 cut(s)	169, 698, 1107
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	9 cut(s)	31, 282, 575, 650, 666, 722, 1020, 1027, 1090
FaqI	GGGAC	2 cut(s)	161, 370
FatI	CATG	9 cut(s)	27, 278, 571, 646, 662, 718, 1016, 1023, 1086
Fnu4HI	GCNGC	4 cut(s)	12, 453, 990, 1116
FokI	GGATG	2 cut(s)	911, 1184
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	4 cut(s)	12, 453, 990, 1116
GluI	GCNGC	4 cut(s)	12, 453, 990, 1116
GsaI	CCCAGC	1 cut(s)	1033
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	76, 105, 1022
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	9 cut(s)	31, 282, 575, 650, 666, 722, 1020, 1027, 1090
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	3 cut(s)	174, 779, 998
HpaI	GTTAAC	1 cut(s)	909
HphI	GGTGA	3 cut(s)	188, 500, 523
Hpy166II	GTNNAC	4 cut(s)	196, 371, 514, 909
Hpy188I	TCNGA	4 cut(s)	51, 225, 805, 938
Hpy188III	TCNNGA	6 cut(s)	203, 719, 776, 828, 861, 958
Hpy8I	GTNNAC	4 cut(s)	196, 371, 514, 909
HpyCH4III	ACNGT	2 cut(s)	566, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	742, 1121
HpyF3I	CTNAG	3 cut(s)	180, 795, 1223
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	9 cut(s)	31, 282, 575, 650, 666, 722, 1020, 1027, 1090
KspAI	GTTAAC	1 cut(s)	909
Kzo9I	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
LmnI	GCTCC	2 cut(s)	620, 952
Lsp1109I	GCAGC	3 cut(s)	439, 1001, 1102
LweI	GCATC	3 cut(s)	544, 594, 676
MabI	ACCWGGT	1 cut(s)	1107
MaeIII	GTNAC	4 cut(s)	55, 560, 820, 1218
MalI	GATC	5 cut(s)	290, 652, 1045, 1068, 1209
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
MboII	GAAGA	6 cut(s)	135, 257, 707, 764, 847, 978
MfeI	CAATTG	2 cut(s)	440, 629
MflI	RGATCY	2 cut(s)	288, 1207
MhlI	GDGCHC	3 cut(s)	373, 726, 957
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	2 cut(s)	238, 266
MnlI	CCTC	8 cut(s)	61, 115, 175, 337, 484, 502, 1203, 1208
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	415, 714
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	6 cut(s)	20, 38, 387, 789, 908, 1094
Msp20I	TGGCCA	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	171, 700, 1109
MunI	CAATTG	2 cut(s)	440, 629
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	3 cut(s)	171, 700, 1109
MvnI	CGCG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	2 cut(s)	742, 1121
NcoI	CCATGG	1 cut(s)	1086
NdeII	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
NlaIII	CATG	9 cut(s)	31, 282, 575, 650, 666, 722, 1020, 1027, 1090
NlaIV	GGNNCC	3 cut(s)	348, 616, 640
NmuCI	GTSAC	2 cut(s)	820, 1218
PagI	TCATGA	1 cut(s)	718
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	2 cut(s)	415, 714
PfeI	GAWTC	2 cut(s)	779, 998
PflFI	GACNNNGTC	1 cut(s)	642
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	13, 454, 991, 1117
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	957
Psp6I	CCWGG	3 cut(s)	169, 698, 1107
PspFI	CCCAGC	1 cut(s)	1029
PspGI	CCWGG	3 cut(s)	169, 698, 1107
PspN4I	GGNNCC	3 cut(s)	348, 616, 640
PspPI	GGNCC	2 cut(s)	638, 1020
PsuI	RGATCY	2 cut(s)	288, 1207
PsyI	GACNNNGTC	1 cut(s)	642
RsaI	GTAC	2 cut(s)	1176, 1200
RsaNI	GTAC	2 cut(s)	1175, 1199
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	6 cut(s)	20, 38, 387, 789, 908, 1094
SatI	GCNGC	4 cut(s)	12, 453, 990, 1116
Sau3AI	GATC	5 cut(s)	288, 650, 1043, 1066, 1207
Sau96I	GGNCC	2 cut(s)	638, 1020
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	3 cut(s)	171, 700, 1109
SduI	GDGCHC	3 cut(s)	373, 726, 957
SexAI	ACCWGGT	1 cut(s)	1107
SfaNI	GCATC	3 cut(s)	544, 594, 676
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SsiI	CCGC	4 cut(s)	45, 673, 734, 740
SspI	AATATT	1 cut(s)	481
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	3 cut(s)	169, 698, 1107
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	2 cut(s)	566, 820
TaqI	TCGA	3 cut(s)	308, 777, 1156
TatI	WGTACW	1 cut(s)	1174
TfiI	GAWTC	2 cut(s)	779, 998
Tru1I	TTAA	6 cut(s)	20, 38, 387, 789, 908, 1094
Tru9I	TTAA	6 cut(s)	20, 38, 387, 789, 908, 1094
TscAI	CASTG	4 cut(s)	475, 731, 1042, 1227
TseFI	GTSAC	2 cut(s)	820, 1218
TseI	GCWGC	4 cut(s)	11, 452, 989, 1115
Tsp45I	GTSAC	2 cut(s)	820, 1218
TspDTI	ATGAA	4 cut(s)	560, 612, 707, 1011
TspGWI	ACGGA	2 cut(s)	926, 1184
TspRI	CASTG	4 cut(s)	475, 731, 1042, 1227
Tth111I	GACNNNGTC	1 cut(s)	642
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	4 cut(s)	261, 383, 528, 865
XmnI	GAANNNNTTC	2 cut(s)	415, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.