RchiOBHm_Chr7g0202421

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
20043612 .. 20045067
1456 bp
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UTR
Exon/CDS
Intron
PRQ18121

Sequence Viewer

Length: 336 bp
ATGGAAGAGAAGATGAGAATTGGAGGAGGGTTGCTTTTTGTAGTAGTGGCTGTTAAGAAAGTAAACGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTCGGCATCAAAACATCATCAAACTTTTGGGTTACTGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGGTATGAACTTTCTATTGGTATCAAGTAACATAGATGGAGAAAGACATTTGCAAATGGCACAAGAAGGTTTTGTTGATGCGAAAAGATATTATATCAGCTTTTGA

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

8.76

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 15 - 96 1.4e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 76 2.2e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 92, 123
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
ApoI RAATTY 2 cut(s) 92, 123
AsuHPI GGTGA 1 cut(s) 118
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 4 cut(s) 70, 139, 189, 298
Bse1I ACTGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 161
BstF5I GGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 85
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 50, 210, 330
CviKI_1 RGCY 3 cut(s) 50, 210, 330
FaeI CATG 1 cut(s) 170
FaiI YATR 7 cut(s) 71, 168, 192, 231, 236, 263, 324
FatI CATG 1 cut(s) 166
FokI GGATG 1 cut(s) 92
Hin1II CATG 1 cut(s) 170
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 64, 109
Hpy8I GTNNAC 2 cut(s) 64, 109
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 202, 283
Hsp92II CATG 1 cut(s) 170
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 2 cut(s) 62, 97
LweI GCATC 4 cut(s) 70, 139, 189, 298
MaeIII GTNAC 2 cut(s) 155, 257
MboII GAAGA 2 cut(s) 17, 22
MfeI CAATTG 1 cut(s) 224
MluCI AATT 4 cut(s) 18, 92, 123, 224
MnlI CCTC 3 cut(s) 17, 20, 97
MseI TTAA 1 cut(s) 54
MunI CAATTG 1 cut(s) 224
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 54
SetI ASST 4 cut(s) 108, 182, 301, 332
SfaNI GCATC 4 cut(s) 70, 139, 189, 298
SgeI CNNG 7 cut(s) 89, 124, 179, 189, 197, 267, 305
Sse9I AATT 4 cut(s) 18, 92, 123, 224
TaaI ACNGT 1 cut(s) 161
TasI AATT 4 cut(s) 18, 92, 123, 224
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 155, 207, 251
XapI RAATTY 2 cut(s) 92, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.