MD17G1219900.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
26822164 .. 26826069
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1219900.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGGAACTTGCTCTTCTCTTAATACCCATGTGGGTTTTAGCTACCCCTTTGTTGGTAACCATAATTGAGGCAGGAAGAGTCTTAGAGCCAGCAAGTTCCACCATTTCTGGCCACAGTATGCTTCTTCAGGAACAACCCATTACTCAGTTTTCTGTGAAAATGGAAGCTCAATCTCCAGGATTGCCTGAGGTTAGAGTAGTTCACCATTCTGAGTTGAATAAGAGAATTCTTATAGCACTCATTGTTGCTTCCACACTCCTTGGGGGAAGCTTGCTGTTCCTGTCATGTTTTTGGATCTATAGACAGAAAACCCGGAAACACTCTATTAGGAAAAAGGAAACGACAACGGAGGCTGCAAAAGGGGTTCCATTAAATCCAATCATGGTTGAATTTAATTCCTTGAGGGTCGGTAGTAGGAAGGGTTCGGTTGCGATATTCAATTATCCATTGCTGGAAGCTGCAACAAACAATTTCAGTAAAAGTAATGTCTTGATTGAGAGGGGTTCTGGAAGTCTCTACAGAGCTAGTTTTGATGAGAAATTTATTGCGGCTGTTAAGAAAGTAAATAGCGCAAGGCAGGCTTCTGAAAGAGAATTTAAGAATGAGGTGAACTGGTTGAGCAAAATCCAGCATCAAAACATCATCAGACTTTTGGGTTACTGCGTTCATGGCGAAGCAAGGTTCCTTGTTTATGACATGGTGCAGAATGGGTCCTTAGATACTCAATTGTGCGGACCTAGTCATGGGTCCTCTTTGACGTGGCATCTACGGTTGAAAATTGCTGTTGATGTAGCCAGGGGATTGGAATATCTTCATGAGCACTGTAATCCCCCTGTGGTGCACAGAGACCTTAAATCATCTAACATTCTTCTGGATTCAAATTTTAATGCTAAGCTTTCAGATTTTGGTCTTGCTGTAACTTCTGGGGTGAAGGATGAGGACAACATAAAGCTGTCTGGGGCTCTAGGTTATGTAGCACCAGAGTACATTTCGGATGGTCAATTAACTGATAAGAGTGATGTCTATGCTTTCGGCGTTGTCCTTTTGGAGCTCTTGATAGGAAGAAAGTCGGTGGAAAGTAACACTGGAGCTGAACGTCAATCTATAGTCACATGGGCCATGCCCCAGCTCACTGACAGATCAAGGCTTCCATACATTGTGGATCATGTGATCAAAGATACCATGGATTTAAAACACCTGTACCAGGTTGCCGCTGTAGCGGTACTATGTGTACAACCTGAACCAACTTACAGACCATTGATAACGGATGTGCTGCACTCGCTAATCCCTCTTGTGCCTATTCATCTCGGAGGGTCGCTTAGAATTACAGGGAATGTACCTTCGGCGTGA

Protein Analysis

450

Amino Acids

49.66

Weight (kDa)

8.65

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 170 - 380 1.1e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 176 - 386 2.9e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 548, 732, 1212, 1220
AclWI GGATC 2 cut(s) 302, 1170
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 5 cut(s) 225, 389, 539, 593, 880
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 5 cut(s) 986, 1202, 1224, 1233, 1338
AfiI CCNNNNNNNGG 3 cut(s) 52, 743, 1204
AgsI TTSAA 5 cut(s) 217, 389, 439, 775, 879
AjiI CACGTC 1 cut(s) 759
AjnI CCWGG 3 cut(s) 175, 794, 1203
Alw21I GWGCWC 3 cut(s) 822, 843, 1053
Alw26I GTCTC 2 cut(s) 518, 840
Alw44I GTGCAC 1 cut(s) 839
AlwI GGATC 2 cut(s) 302, 1170
AoxI GGCC 2 cut(s) 109, 1116
ApaLI GTGCAC 1 cut(s) 839
ApeKI GCWGC 3 cut(s) 353, 458, 1273
ApoI RAATTY 5 cut(s) 225, 389, 539, 593, 880
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 4 cut(s) 711, 734, 747, 1116
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 194, 619, 940
AvaII GGWCC 3 cut(s) 711, 734, 747
AxyI CCTNAGG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1184, 1217
BalI TGGCCA 1 cut(s) 111
BanII GRGCYC 2 cut(s) 964, 1053
Bbv12I GWGCWC 3 cut(s) 822, 843, 1053
BbvI GCAGC 3 cut(s) 340, 445, 1260
BccI CCATC 1 cut(s) 989
BciT130I CCWGG 3 cut(s) 177, 796, 1205
BclI TGATCA 1 cut(s) 1170
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 518, 840
BfaI CTAG 3 cut(s) 525, 738, 965
BfmI CTRYAG 4 cut(s) 298, 517, 1104, 1215
BisI GCNGC 5 cut(s) 354, 459, 549, 1212, 1274
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 5 cut(s) 355, 460, 550, 1213, 1275
Bme1390I CCNGG 4 cut(s) 177, 313, 796, 1205
Bme18I GGWCC 3 cut(s) 711, 734, 747
BmgBI CACGTC 1 cut(s) 759
BmgT120I GGNCC 4 cut(s) 711, 734, 747, 1116
BmiI GGNNCC 4 cut(s) 366, 683, 712, 748
BmrFI CCNGG 4 cut(s) 177, 313, 796, 1205
BmsI GCATC 2 cut(s) 640, 772
BpmI CTGGAG 2 cut(s) 159, 1107
Bpu1102I GCTNAGC 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 259, 795, 1182
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 743, 1204
Bse1I ACTGG 2 cut(s) 617, 1090
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 3 cut(s) 177, 796, 1205
BseDI CCNNGG 3 cut(s) 259, 795, 1182
BseGI GGATG 3 cut(s) 940, 1000, 1273
BseLI CCNNNNNNNGG 3 cut(s) 52, 743, 1204
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 158, 177, 201
BseNI ACTGG 2 cut(s) 617, 1090
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 3 cut(s) 340, 445, 1260
BseYI CCCAGC 1 cut(s) 1125
BsgI GTGCAG 2 cut(s) 722, 1259
BshFI GGCC 2 cut(s) 111, 1118
BsiHKAI GWGCWC 3 cut(s) 822, 843, 1053
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 52, 743, 1204
BsmAI GTCTC 2 cut(s) 518, 840
BsnI GGCC 2 cut(s) 111, 1118
Bso31I GGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 4 cut(s) 822, 843, 964, 1053
Bsp1407I TGTACA 1 cut(s) 1231
Bsp143I GATC 4 cut(s) 294, 1139, 1162, 1170
Bsp1720I GCTNAGC 1 cut(s) 891
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 4 cut(s) 548, 732, 1212, 1220
BspANI GGCC 2 cut(s) 111, 1118
BspCNI CTCAG 3 cut(s) 157, 178, 202
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 4 cut(s) 366, 683, 712, 748
BspPI GGATC 2 cut(s) 302, 1170
BspQI GCTCTTC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 1231
BsrI ACTGG 2 cut(s) 617, 1090
BssECI CCNNGG 3 cut(s) 259, 795, 1182
BssMI GATC 4 cut(s) 294, 1139, 1162, 1170
BssT1I CCWWGG 2 cut(s) 259, 1182
Bst2UI CCWGG 3 cut(s) 177, 796, 1205
Bst4CI ACNGT 3 cut(s) 116, 771, 824
Bst6I CTCTTC 2 cut(s) 18, 70
BstAUI TGTACA 1 cut(s) 1231
BstC8I GCNNGC 3 cut(s) 90, 272, 579
BstDEI CTNAG 7 cut(s) 82, 144, 186, 210, 715, 891, 1319
BstDSI CCRYGG 1 cut(s) 1182
BstEII GGTNACC 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 1202
BstF5I GGATG 3 cut(s) 940, 1000, 1273
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 4 cut(s) 297, 1142, 1165, 1173
BstMAI GTCTC 2 cut(s) 518, 840
BstMBI GATC 4 cut(s) 294, 1139, 1162, 1170
BstMWI GCNNNNNNNGC 4 cut(s) 578, 669, 1217, 1279
BstNI CCWGG 3 cut(s) 177, 796, 1205
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 4 cut(s) 175, 311, 794, 1203
BstSFI CTRYAG 4 cut(s) 298, 517, 1104, 1215
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 340, 445, 1260
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 2 cut(s) 111, 1118
BtgI CCRYGG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 759
BtsCI GGATG 3 cut(s) 940, 1000, 1273
BtsIMutI CAGTG 3 cut(s) 820, 1083, 1131
Cac8I GCNNGC 3 cut(s) 90, 272, 579
CciI TCATGA 1 cut(s) 814
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 4 cut(s) 711, 734, 747, 1116
CsiI ACCWGGT 1 cut(s) 1203
Csp6I GTAC 5 cut(s) 985, 1201, 1223, 1232, 1337
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviQI GTAC 5 cut(s) 985, 1201, 1223, 1232, 1337
DdeI CTNAG 7 cut(s) 82, 144, 186, 210, 715, 891, 1319
DpnI GATC 4 cut(s) 296, 1141, 1164, 1172
DpnII GATC 4 cut(s) 294, 1139, 1162, 1170
DraI TTTAAA 1 cut(s) 1191
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 18, 70
EarI CTCTTC 2 cut(s) 18, 70
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 2 cut(s) 259, 1182
Eco24I GRGCYC 2 cut(s) 964, 1053
Eco31I GGTCTC 1 cut(s) 840
Eco47I GGWCC 3 cut(s) 711, 734, 747
Eco53kI GAGCTC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 1051
EcoNI CCTNNNNNAGG 1 cut(s) 1202
EcoO109I RGGNCCY 2 cut(s) 711, 747
EcoO65I GGTNACC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 3 cut(s) 175, 794, 1203
EcoT14I CCWWGG 2 cut(s) 259, 1182
EcoT38I GRGCYC 2 cut(s) 964, 1053
ErhI CCWWGG 2 cut(s) 259, 1182
FalI AAGNNNNNCTT 2 cut(s) 565, 597
FbaI TGATCA 1 cut(s) 1170
Fnu4HI GCNGC 5 cut(s) 354, 459, 549, 1212, 1274
FokI GGATG 3 cut(s) 947, 1007, 1280
FriOI GRGCYC 2 cut(s) 964, 1053
Fsp4HI GCNGC 5 cut(s) 354, 459, 549, 1212, 1274
FspBI CTAG 3 cut(s) 525, 738, 965
GlaI GCGC 1 cut(s) 571
GluI GCNGC 5 cut(s) 354, 459, 549, 1212, 1274
GsaI CCCAGC 1 cut(s) 1129
GsuI CTGGAG 2 cut(s) 159, 1107
HaeIII GGCC 2 cut(s) 111, 1118
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 572
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HindIII AAGCTT 2 cut(s) 268, 893
HinfI GANTC 2 cut(s) 78, 875
HpaII CCGG 1 cut(s) 313
HphI GGTGA 3 cut(s) 194, 619, 940
Hpy166II GTNNAC 4 cut(s) 202, 610, 841, 1232
Hpy188I TCNGA 6 cut(s) 211, 586, 647, 901, 994, 1310
Hpy188III TCNNGA 6 cut(s) 128, 490, 507, 815, 872, 1054
Hpy8I GTNNAC 4 cut(s) 202, 610, 841, 1232
HpyAV CCTTC 3 cut(s) 412, 925, 1350
HpyCH4III ACNGT 3 cut(s) 116, 771, 824
HpyCH4IV ACGT 2 cut(s) 758, 1096
HpyCH4V TGCA 5 cut(s) 356, 461, 703, 841, 1276
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 669, 1217, 1279
HpyF3I CTNAG 7 cut(s) 82, 144, 186, 210, 715, 891, 1319
HpySE526I ACGT 2 cut(s) 758, 1096
HspAI GCGC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 1170
Kzo9I GATC 4 cut(s) 294, 1139, 1162, 1170
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 1048, 1088
Lsp1109I GCAGC 3 cut(s) 340, 445, 1260
LweI GCATC 2 cut(s) 640, 772
MabI ACCWGGT 1 cut(s) 1203
MaeI CTAG 3 cut(s) 525, 738, 965
MaeII ACGT 2 cut(s) 758, 1096
MaeIII GTNAC 5 cut(s) 55, 656, 916, 1079, 1108
MalI GATC 4 cut(s) 296, 1141, 1164, 1172
MboI GATC 4 cut(s) 294, 1139, 1162, 1170
MboII GAAGA 6 cut(s) 5, 87, 116, 803, 860, 1074
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 4 cut(s) 822, 843, 964, 1053
MlsI TGGCCA 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 111
MseI TTAA 9 cut(s) 20, 371, 393, 555, 597, 852, 885, 1004, 1190
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 1214
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 4 cut(s) 177, 313, 796, 1205
MunI CAATTG 1 cut(s) 725
MvaI CCWGG 3 cut(s) 177, 796, 1205
MwoI GCNNNNNNNGC 4 cut(s) 578, 669, 1217, 1279
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 4 cut(s) 294, 1139, 1162, 1170
NlaIV GGNNCC 4 cut(s) 366, 683, 712, 748
NmuCI GTSAC 1 cut(s) 1108
PagI TCATGA 1 cut(s) 814
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 875
PflFI GACNNNGTC 1 cut(s) 738
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 5 cut(s) 355, 460, 550, 1213, 1275
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 2 cut(s) 711, 747
Psp124BI GAGCTC 1 cut(s) 1053
Psp5II RGGWCCY 2 cut(s) 711, 747
Psp6I CCWGG 3 cut(s) 175, 794, 1203
PspEI GGTNACC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 1125
PspGI CCWGG 3 cut(s) 175, 794, 1203
PspN4I GGNNCC 4 cut(s) 366, 683, 712, 748
PspPI GGNCC 4 cut(s) 711, 734, 747, 1116
PspPPI RGGWCCY 2 cut(s) 711, 747
PsrI GAACNNNNNNTAC 2 cut(s) 406, 438
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 738
RsaI GTAC 5 cut(s) 986, 1202, 1224, 1233, 1338
RsaNI GTAC 5 cut(s) 985, 1201, 1223, 1232, 1337
SacI GAGCTC 1 cut(s) 1053
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 9 cut(s) 20, 371, 393, 555, 597, 852, 885, 1004, 1190
SatI GCNGC 5 cut(s) 354, 459, 549, 1212, 1274
Sau3AI GATC 4 cut(s) 294, 1139, 1162, 1170
Sau96I GGNCC 4 cut(s) 711, 734, 747, 1116
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 4 cut(s) 177, 313, 796, 1205
SduI GDGCHC 4 cut(s) 822, 843, 964, 1053
SexAI ACCWGGT 1 cut(s) 1203
SfaNI GCATC 2 cut(s) 640, 772
SfcI CTRYAG 4 cut(s) 298, 517, 1104, 1215
SinI GGWCC 3 cut(s) 711, 734, 747
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SsiI CCGC 4 cut(s) 548, 732, 1212, 1220
SspMI CTAG 3 cut(s) 525, 738, 965
SstI GAGCTC 1 cut(s) 1053
StyD4I CCNGG 4 cut(s) 175, 311, 794, 1203
StyI CCWWGG 2 cut(s) 259, 1182
TaaI ACNGT 3 cut(s) 116, 771, 824
TaiI ACGT 2 cut(s) 761, 1099
TatI WGTACW 2 cut(s) 984, 1231
TauI GCSGC 2 cut(s) 551, 1214
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 9 cut(s) 20, 371, 393, 555, 597, 852, 885, 1004, 1190
Tru9I TTAA 9 cut(s) 20, 371, 393, 555, 597, 852, 885, 1004, 1190
TscAI CASTG 3 cut(s) 827, 1090, 1138
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 3 cut(s) 353, 458, 1273
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 3 cut(s) 656, 803, 1292
TspGWI ACGGA 2 cut(s) 362, 1280
TspRI CASTG 3 cut(s) 827, 1090, 1138
Tth111I GACNNNGTC 1 cut(s) 738
VneI GTGCAC 1 cut(s) 839
VpaK11BI GGWCC 3 cut(s) 711, 734, 747
XagI CCTNNNNNAGG 1 cut(s) 1202
XapI RAATTY 5 cut(s) 225, 389, 539, 593, 880
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 3 cut(s) 525, 738, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.