Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Reverse (-)

34510606 .. 34517056

Gene Structure 6451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCCTTCCATCTAAGTCATTTTACTTTTCTCTTGGTGGTGTCAAGTGAGATTGTTGGAGAAGAAGCTTCCACCACTTCTGGCCACATTATGCTACTTGAGGAACAACCCATTACTCATTCTTCTGCAAAAATGGAAGCTCAATCTCCAGGAGTCCCTGAGGTTAGAGTAGTTCACCATCAAGATTTGAACAAGAGCATTCTGATAGCACTCATTGTTGCTTCCACACTCCTTGTTGGAATTCTTCTGTTCTTGTCATGTTGTTGGATCTATAGACAGAAAATGTCGAAACACTCTATTGGGAAAAGGCAAAAGACAAACGAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTTCGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAAACGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTCGGCATCAAAACATCATCAAACTTTTGGGTTACTGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGTTCACCGTCATCCTCTACACCCAGGCCATCACCGTCGACTCCAACAACTCCGACTCCAAGTGCATTTGGTGATAGAAGGCCAAGAAGCCAAAGTACAGATTCACAAGGCTCTACACTACAAAATGCAGCCTTTGTTGCATTATTTGATAGGATTGTATTTCATTGACCACATATTCACTGGTTTGTTACTCAATTTGATTACAATATTCACACTACAGCTAACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

311

Amino Acids

35.35

Weight (kDa)

9.35

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	150 - 235	1.3e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	153 - 259	2.4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	742
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	1 cut(s)	801
AgsI	TTSAA	3 cut(s)	190, 362, 412
AjnI	CCWGG	2 cut(s)	148, 727
AluBI	AGCT	5 cut(s)	68, 140, 431, 524, 925
AluI	AGCT	5 cut(s)	68, 140, 431, 524, 925
Alw21I	GWGCWC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	3 cut(s)	82, 730, 784
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	431, 521, 832
ApoI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	6 cut(s)	167, 479, 592, 701, 728, 787
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	783, 815
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	418, 533, 844
BccI	CCATC	4 cut(s)	18, 186, 500, 741
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	2 cut(s)	150, 729
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	271, 920
BisI	GCNGC	3 cut(s)	432, 522, 833
BlsI	GCNGC	3 cut(s)	433, 523, 834
Bme1390I	CCNGG	2 cut(s)	150, 729
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	327, 685
BmrFI	CCNGG	2 cut(s)	150, 729
BmsI	GCATC	3 cut(s)	544, 613, 663
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	727
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bse1I	ACTGG	2 cut(s)	590, 889
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	150, 729
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	2 cut(s)	559, 715
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	590, 889
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	418, 533, 844
BshFI	GGCC	3 cut(s)	84, 732, 786
BsiHKAI	GWGCWC	1 cut(s)	352
BslFI	GGGAC	2 cut(s)	140, 349
BsmFI	GGGAC	2 cut(s)	140, 349
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	84, 732, 786
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	267
BspANI	GGCC	3 cut(s)	84, 732, 786
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	327, 685
BspPI	GGATC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	590, 889
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	150, 729
Bst4CI	ACNGT	3 cut(s)	635, 713, 740
BstACI	GRCGYC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	14, 159
BstF5I	GGATG	2 cut(s)	559, 715
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	2 cut(s)	150, 729
BstSCI	CCNGG	2 cut(s)	148, 727
BstSFI	CTRYAG	2 cut(s)	271, 920
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	418, 533, 844
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	84, 732, 786
BtsCI	GGATG	2 cut(s)	559, 715
BtsIMutI	CAGTG	2 cut(s)	454, 882
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	800
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	258, 641
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	2 cut(s)	14, 159
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	148, 727
FaeI	CATG	2 cut(s)	261, 644
FaiI	YATR	9 cut(s)	92, 259, 273, 356, 545, 642, 666, 705, 878
FaqI	GGGAC	2 cut(s)	140, 349
FatI	CATG	2 cut(s)	257, 640
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	432, 522, 833
FokI	GGATG	2 cut(s)	566, 702
Fsp4HI	GCNGC	3 cut(s)	432, 522, 833
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	3 cut(s)	432, 522, 833
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	84, 732, 786
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	261, 644
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	153, 744, 759, 805
HphI	GGTGA	6 cut(s)	167, 479, 592, 701, 728, 787
Hpy166II	GTNNAC	7 cut(s)	175, 350, 490, 538, 583, 709, 743
Hpy188I	TCNGA	3 cut(s)	204, 482, 758
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	7 cut(s)	175, 350, 490, 538, 583, 709, 743
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	2 cut(s)	16, 776
HpyCH4III	ACNGT	3 cut(s)	635, 713, 740
HpyCH4V	TGCA	8 cut(s)	128, 350, 434, 521, 676, 769, 832, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	2 cut(s)	14, 159
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	261, 644
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	3 cut(s)	418, 533, 844
LweI	GCATC	3 cut(s)	544, 613, 663
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	629, 891
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	3 cut(s)	74, 114, 236
MfeI	CAATTG	2 cut(s)	419, 698
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	162, 738, 753
MmeI	TCCRAC	5 cut(s)	37, 217, 245, 772, 781
MnlI	CCTC	6 cut(s)	94, 154, 316, 463, 571, 729
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	366, 528
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	150, 729
MunI	CAATTG	2 cut(s)	419, 698
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	150, 729
MwoI	GCNNNNNNNGC	1 cut(s)	841
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	261, 644
NlaIV	GGNNCC	2 cut(s)	327, 685
PctI	GAATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	805
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	433, 523, 834
PleI	GAGTC	3 cut(s)	161, 738, 753
PpsI	GAGTC	3 cut(s)	161, 738, 753
Psp6I	CCWGG	2 cut(s)	148, 727
PspGI	CCWGG	2 cut(s)	148, 727
PspN4I	GGNNCC	2 cut(s)	327, 685
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SalI	GTCGAC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	366, 528
SatI	GCNGC	3 cut(s)	432, 522, 833
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	3 cut(s)	162, 738, 753
ScrFI	CCNGG	2 cut(s)	150, 729
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	3 cut(s)	544, 613, 663
SfcI	CTRYAG	2 cut(s)	271, 920
SinI	GGWCC	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SspI	AATATT	2 cut(s)	460, 912
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	148, 727
TaaI	ACNGT	3 cut(s)	635, 713, 740
TaqI	TCGA	2 cut(s)	287, 742
TatI	WGTACW	1 cut(s)	799
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	2 cut(s)	366, 528
Tru9I	TTAA	2 cut(s)	366, 528
TscAI	CASTG	2 cut(s)	454, 889
TseI	GCWGC	3 cut(s)	431, 521, 832
TspDTI	ATGAA	4 cut(s)	505, 629, 681, 856
TspRI	CASTG	2 cut(s)	454, 889
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	5 cut(s)	240, 362, 512, 566, 597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.