Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Forward (+)

20850328 .. 20853830

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAACTTGCTCTTCTCTTAATACCCATGTGGGTTTTAGCTACCCCTTTGTTGGTAACCATAATTGAGGCAGGAAGAGTCTTAGAGGCAGCAAGTTCCACCATTTCTGGCCGCATTATGCTTCTTCAGGAACAACCCATCACGCAGTTTTCTGTGAGAATGGAAGCTCAATCTCCAGGATTGCCTGAGGTTAGAGTGGTTCACCATTCTGAGTTGAATAAGAGAATTCTTATAGCACTCATTGTTGCTTCCACACTCCTTGGGGGAAGCTTGCTGTTCCTGTCATGTTTTTGGATCTGTAGACAGAAAACCCTGAAACACTATATTGGGAAAAAGGAAACGACAATGGAGGCTGCAAAAGGGGTTCCATCAAGTCCAATCATGGTTGAATTTAATTCCTTGAGGGTAGGCAGTAGGAAGGGTTCAGTTGCGATATTCAATTATCCATTGCTGGAAGCTGCAACAAACAATTTCAGTAAAAGTAATGTCTTGATTGAAAGGGGTTCTGGACTTCTCTACAGAGCTAGTTTTGATGAGAAATTTATTGCAGCTGTTAAGAAAGTAAATAGCGCAAGGCAGGACTCTGAAAGAGAATTTGAGGAGGTGAACTGGTTGAGCAAAATCCAGCATCAAAACATCATCAGACTTTTGGGTTACTGCGTTCATGGCGAAGCAAGGTTCCTTGTTTATGACATGGTGCAGAACGGGTCCTTAGATACTCAATTGTGCGGACCTAGTCATGGGTCCTCTTTGACATGGCATCTACGATTGAAAATTGCTGTAGATGTAGCCAGGGGATTGGAATATCTTCATGAGCATTGTAATCCCCCTGTGGTGCACAGAGACCTTAAATCATCTAACATTCTTCTGGATTCAAATTTTAATGCTAAGCTTTCAGATTTTGGTCTTGCTGTAACTTCTGGGGTGAAGGATGAGGACAACATAAAGCTGTCTGGGGCTCTAGGTTATGTACCACCAGAGTACATTTCGGATGGTCAATTAACTGATAAGAGTGATGTCTATGCTTTTGGCGTTGTCCTTTTGGAGCTCTTGATGGGAAGAAAGTCGGTGGAAAGTAACACTGGAGCTGAACGTCAATCTATAGTCACATGGGCCATGCCCCAGCTCACTGACAGATCAAGGCTTCCAAACATTGTGGATCATGTGATCAAAGATACTATGGATTTAAAACACCTGTACCAGGTTGCCGCTGTAGCGGTACTATGTGTACAACCTGAACCAAGTTACAGACCATTGATAACGGATGTGCTGCACTCGCTAATCCCTCTTGTGCCTATTCATCTCGGAGGGTCGCTTAGAATTACAGGGAATGTACCTTCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

449

Amino Acids

49.49

Weight (kDa)

7.24

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	4 cut(s)	112, 729, 1209, 1217
AclWI	GGATC	2 cut(s)	302, 1167
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	5 cut(s)	225, 389, 539, 593, 877
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	6 cut(s)	972, 983, 1199, 1221, 1230, 1335
AfiI	CCNNNNNNNGG	3 cut(s)	52, 740, 1201
AgsI	TTSAA	6 cut(s)	217, 389, 439, 497, 772, 876
AjnI	CCWGG	3 cut(s)	175, 791, 1200
Alw21I	GWGCWC	2 cut(s)	840, 1050
Alw26I	GTCTC	1 cut(s)	837
Alw44I	GTGCAC	1 cut(s)	836
AlwI	GGATC	2 cut(s)	302, 1167
AoxI	GGCC	2 cut(s)	109, 1113
ApaLI	GTGCAC	1 cut(s)	836
ApeKI	GCWGC	5 cut(s)	89, 353, 458, 548, 1270
ApoI	RAATTY	5 cut(s)	225, 389, 539, 593, 877
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	4 cut(s)	708, 731, 744, 1113
AsuHPI	GGTGA	3 cut(s)	194, 616, 937
AvaII	GGWCC	3 cut(s)	708, 731, 744
AxyI	CCTNAGG	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	840
BaeI	ACNNNNGTAYC	2 cut(s)	1181, 1214
BanII	GRGCYC	2 cut(s)	961, 1050
Bbv12I	GWGCWC	2 cut(s)	840, 1050
BbvI	GCAGC	5 cut(s)	101, 340, 445, 560, 1257
BccI	CCATC	4 cut(s)	146, 376, 986, 1048
BciT130I	CCWGG	3 cut(s)	177, 793, 1202
BclI	TGATCA	1 cut(s)	1167
BcoDI	GTCTC	1 cut(s)	837
BfaI	CTAG	3 cut(s)	525, 735, 962
BfmI	CTRYAG	5 cut(s)	298, 517, 780, 1101, 1212
BisI	GCNGC	7 cut(s)	90, 112, 354, 459, 549, 1209, 1271
BlpI	GCTNAGC	1 cut(s)	888
BlsI	GCNGC	7 cut(s)	91, 113, 355, 460, 550, 1210, 1272
Bme1390I	CCNGG	3 cut(s)	177, 793, 1202
Bme18I	GGWCC	3 cut(s)	708, 731, 744
BmgT120I	GGNCC	4 cut(s)	708, 731, 744, 1113
BmiI	GGNNCC	4 cut(s)	366, 680, 709, 745
BmrFI	CCNGG	3 cut(s)	177, 793, 1202
BmsI	GCATC	2 cut(s)	637, 769
BpmI	CTGGAG	2 cut(s)	159, 1104
Bpu1102I	GCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	2 cut(s)	259, 792
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 740, 1201
Bse1I	ACTGG	2 cut(s)	614, 1087
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	3 cut(s)	177, 793, 1202
BseDI	CCNNGG	2 cut(s)	259, 792
BseGI	GGATG	3 cut(s)	937, 997, 1270
BseLI	CCNNNNNNNGG	3 cut(s)	52, 740, 1201
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	177, 201
BseNI	ACTGG	2 cut(s)	614, 1087
BseRI	GAGGAG	1 cut(s)	614
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	5 cut(s)	101, 340, 445, 560, 1257
BseYI	CCCAGC	1 cut(s)	1122
BsgI	GTGCAG	2 cut(s)	719, 1256
BshFI	GGCC	2 cut(s)	111, 1115
BsiHKAI	GWGCWC	2 cut(s)	840, 1050
BslI	CCNNNNNNNGG	3 cut(s)	52, 740, 1201
BsmAI	GTCTC	1 cut(s)	837
BsnI	GGCC	2 cut(s)	111, 1115
Bso31I	GGTCTC	1 cut(s)	837
Bsp1286I	GDGCHC	3 cut(s)	840, 961, 1050
Bsp1407I	TGTACA	1 cut(s)	1228
Bsp143I	GATC	4 cut(s)	294, 1136, 1159, 1167
Bsp1720I	GCTNAGC	1 cut(s)	888
BspACI	CCGC	4 cut(s)	112, 729, 1209, 1217
BspANI	GGCC	2 cut(s)	111, 1115
BspCNI	CTCAG	2 cut(s)	178, 202
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	4 cut(s)	366, 680, 709, 745
BspPI	GGATC	2 cut(s)	302, 1167
BspQI	GCTCTTC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	1228
BsrI	ACTGG	2 cut(s)	614, 1087
BssECI	CCNNGG	2 cut(s)	259, 792
BssMI	GATC	4 cut(s)	294, 1136, 1159, 1167
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	3 cut(s)	177, 793, 1202
Bst6I	CTCTTC	2 cut(s)	18, 70
BstAUI	TGTACA	1 cut(s)	1228
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	6 cut(s)	82, 186, 210, 712, 888, 1316
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	1199
BstF5I	GGATG	3 cut(s)	937, 997, 1270
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	4 cut(s)	297, 1139, 1162, 1170
BstMAI	GTCTC	1 cut(s)	837
BstMBI	GATC	4 cut(s)	294, 1136, 1159, 1167
BstMWI	GCNNNNNNNGC	3 cut(s)	666, 1214, 1276
BstNI	CCWGG	3 cut(s)	177, 793, 1202
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	175, 791, 1200
BstSFI	CTRYAG	5 cut(s)	298, 517, 780, 1101, 1212
BstSLI	GKGCMC	1 cut(s)	840
BstV1I	GCAGC	5 cut(s)	101, 340, 445, 560, 1257
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	111, 1115
BtsCI	GGATG	3 cut(s)	937, 997, 1270
BtsIMutI	CAGTG	2 cut(s)	1080, 1128
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	4 cut(s)	708, 731, 744, 1113
CsiI	ACCWGGT	1 cut(s)	1200
Csp6I	GTAC	6 cut(s)	971, 982, 1198, 1220, 1229, 1334
CspCI	CAANNNNNGTGG	4 cut(s)	241, 276, 1137, 1172
CviQI	GTAC	6 cut(s)	971, 982, 1198, 1220, 1229, 1334
DdeI	CTNAG	6 cut(s)	82, 186, 210, 712, 888, 1316
DpnI	GATC	4 cut(s)	296, 1138, 1161, 1169
DpnII	GATC	4 cut(s)	294, 1136, 1159, 1167
DraI	TTTAAA	1 cut(s)	1188
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	18, 70
EarI	CTCTTC	2 cut(s)	18, 70
Ecl136II	GAGCTC	1 cut(s)	1048
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	961, 1050
Eco31I	GGTCTC	1 cut(s)	837
Eco47I	GGWCC	3 cut(s)	708, 731, 744
Eco53kI	GAGCTC	1 cut(s)	1048
Eco57I	CTGAAG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	1048
EcoNI	CCTNNNNNAGG	1 cut(s)	1199
EcoO109I	RGGNCCY	2 cut(s)	708, 744
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	175, 791, 1200
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	961, 1050
ErhI	CCWWGG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	1167
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	7 cut(s)	90, 112, 354, 459, 549, 1209, 1271
FokI	GGATG	3 cut(s)	944, 1004, 1277
FriOI	GRGCYC	2 cut(s)	961, 1050
Fsp4HI	GCNGC	7 cut(s)	90, 112, 354, 459, 549, 1209, 1271
FspBI	CTAG	3 cut(s)	525, 735, 962
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	7 cut(s)	90, 112, 354, 459, 549, 1209, 1271
GsaI	CCCAGC	1 cut(s)	1126
GsuI	CTGGAG	2 cut(s)	159, 1104
HaeIII	GGCC	2 cut(s)	111, 1115
HhaI	GCGC	1 cut(s)	572
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HindIII	AAGCTT	2 cut(s)	268, 890
HinfI	GANTC	3 cut(s)	78, 581, 872
HphI	GGTGA	3 cut(s)	194, 616, 937
Hpy166II	GTNNAC	5 cut(s)	202, 302, 607, 838, 1229
Hpy188I	TCNGA	6 cut(s)	211, 586, 644, 898, 991, 1307
Hpy188III	TCNNGA	6 cut(s)	128, 490, 507, 812, 869, 1051
Hpy8I	GTNNAC	5 cut(s)	202, 302, 607, 838, 1229
HpyAV	CCTTC	3 cut(s)	412, 922, 1347
HpyCH4IV	ACGT	1 cut(s)	1093
HpyCH4V	TGCA	6 cut(s)	356, 461, 548, 700, 838, 1273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	666, 1214, 1276
HpyF3I	CTNAG	6 cut(s)	82, 186, 210, 712, 888, 1316
HpySE526I	ACGT	1 cut(s)	1093
HspAI	GCGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	1167
Kzo9I	GATC	4 cut(s)	294, 1136, 1159, 1167
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	1045, 1085
Lsp1109I	GCAGC	5 cut(s)	101, 340, 445, 560, 1257
LweI	GCATC	2 cut(s)	637, 769
MabI	ACCWGGT	1 cut(s)	1200
MaeI	CTAG	3 cut(s)	525, 735, 962
MaeII	ACGT	1 cut(s)	1093
MaeIII	GTNAC	6 cut(s)	55, 653, 913, 1076, 1105, 1244
MalI	GATC	4 cut(s)	296, 1138, 1161, 1169
MboI	GATC	4 cut(s)	294, 1136, 1159, 1167
MboII	GAAGA	6 cut(s)	5, 87, 116, 800, 857, 1071
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	3 cut(s)	840, 961, 1050
MlyI	GAGTC	2 cut(s)	87, 575
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	7 cut(s)	20, 393, 555, 849, 882, 1001, 1187
MspA1I	CMGCKG	2 cut(s)	551, 1211
MspR9I	CCNGG	3 cut(s)	177, 793, 1202
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	3 cut(s)	177, 793, 1202
MwoI	GCNNNNNNNGC	3 cut(s)	666, 1214, 1276
NdeII	GATC	4 cut(s)	294, 1136, 1159, 1167
NlaIV	GGNNCC	4 cut(s)	366, 680, 709, 745
NmuCI	GTSAC	1 cut(s)	1105
PagI	TCATGA	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	872
PflFI	GACNNNGTC	1 cut(s)	735
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	7 cut(s)	91, 113, 355, 460, 550, 1210, 1272
PleI	GAGTC	2 cut(s)	86, 575
PpsI	GAGTC	2 cut(s)	86, 575
PpuMI	RGGWCCY	2 cut(s)	708, 744
Psp124BI	GAGCTC	1 cut(s)	1050
Psp5II	RGGWCCY	2 cut(s)	708, 744
Psp6I	CCWGG	3 cut(s)	175, 791, 1200
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	1122
PspGI	CCWGG	3 cut(s)	175, 791, 1200
PspN4I	GGNNCC	4 cut(s)	366, 680, 709, 745
PspPI	GGNCC	4 cut(s)	708, 731, 744, 1113
PspPPI	RGGWCCY	2 cut(s)	708, 744
PsrI	GAACNNNNNNTAC	2 cut(s)	406, 438
PsuI	RGATCY	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	6 cut(s)	972, 983, 1199, 1221, 1230, 1335
RsaNI	GTAC	6 cut(s)	971, 982, 1198, 1220, 1229, 1334
SacI	GAGCTC	1 cut(s)	1050
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	7 cut(s)	20, 393, 555, 849, 882, 1001, 1187
SatI	GCNGC	7 cut(s)	90, 112, 354, 459, 549, 1209, 1271
Sau3AI	GATC	4 cut(s)	294, 1136, 1159, 1167
Sau96I	GGNCC	4 cut(s)	708, 731, 744, 1113
SchI	GAGTC	2 cut(s)	87, 575
ScrFI	CCNGG	3 cut(s)	177, 793, 1202
SduI	GDGCHC	3 cut(s)	840, 961, 1050
SexAI	ACCWGGT	1 cut(s)	1200
SfaNI	GCATC	2 cut(s)	637, 769
SfcI	CTRYAG	5 cut(s)	298, 517, 780, 1101, 1212
SinI	GGWCC	3 cut(s)	708, 731, 744
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SsiI	CCGC	4 cut(s)	112, 729, 1209, 1217
SspMI	CTAG	3 cut(s)	525, 735, 962
SstI	GAGCTC	1 cut(s)	1050
StyD4I	CCNGG	3 cut(s)	175, 791, 1200
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	1 cut(s)	1096
TatI	WGTACW	2 cut(s)	981, 1228
TauI	GCSGC	2 cut(s)	114, 1211
TfiI	GAWTC	1 cut(s)	872
Tru1I	TTAA	7 cut(s)	20, 393, 555, 849, 882, 1001, 1187
Tru9I	TTAA	7 cut(s)	20, 393, 555, 849, 882, 1001, 1187
TscAI	CASTG	2 cut(s)	1087, 1135
TseFI	GTSAC	1 cut(s)	1105
TseI	GCWGC	5 cut(s)	89, 353, 458, 548, 1270
Tsp45I	GTSAC	1 cut(s)	1105
TspDTI	ATGAA	3 cut(s)	653, 800, 1289
TspGWI	ACGGA	1 cut(s)	1277
TspRI	CASTG	2 cut(s)	1087, 1135
Tth111I	GACNNNGTC	1 cut(s)	735
VneI	GTGCAC	1 cut(s)	836
VpaK11BI	GGWCC	3 cut(s)	708, 731, 744
XagI	CCTNNNNNAGG	1 cut(s)	1199
XapI	RAATTY	5 cut(s)	225, 389, 539, 593, 877
XmiI	GTMKAC	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	3 cut(s)	525, 735, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.