RchiOBHm_Chr7g0190981

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
9884866 .. 9885634
769 bp
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UTR
Exon/CDS
Intron
PRQ17063

Sequence Viewer

Length: 516 bp
ATGTCGAAACACTCTATTGGGAAAAGGCAAAAGACAAACGAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTCTGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAAATGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTTGGCATCAAAACATCATCAAACTTTTGGGTTACCGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGGTATGAACTTTCTATTGGTATCAAGTAACATAGATGGAGAAAGACATTTGCAAATGGTTTCATCGACAGAACAATTTATTTTGTCCATCTAA

Protein Analysis

171

Amino Acids

19.29

Weight (kDa)

9.36

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 56 - 140 9.4e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 59 - 143 2.8e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 80, 230, 284, 315
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 80, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 2 cut(s) 149, 242
AluI AGCT 2 cut(s) 149, 242
Alw21I GWGCWC 1 cut(s) 70
Alw44I GTGCAC 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 149, 239
ApoI RAATTY 4 cut(s) 80, 230, 284, 315
Asp700I GAANNNNTTC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 197, 310
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 136, 251
BccI CCATC 2 cut(s) 218, 452
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 150, 240
BlsI GCNGC 2 cut(s) 151, 241
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 45, 403
BmsI GCATC 3 cut(s) 262, 331, 381
BsaHI GRCGYC 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 234
BseGI GGATG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 136, 251
BsiHKAI GWGCWC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 45, 403
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 308
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 1 cut(s) 277
BstPI GGTNACC 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 136, 251
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 64
CviAII CATG 1 cut(s) 359
CviJI RGCY 4 cut(s) 149, 215, 242, 402
CviKI_1 RGCY 4 cut(s) 149, 215, 242, 402
Eco47I GGWCC 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
FaeI CATG 1 cut(s) 362
FaiI YATR 7 cut(s) 74, 263, 360, 384, 423, 428, 455
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 150, 240
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 150, 240
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 150, 240
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 362
HphI GGTGA 2 cut(s) 197, 310
Hpy166II GTNNAC 3 cut(s) 68, 208, 301
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 3 cut(s) 68, 208, 301
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 5 cut(s) 68, 152, 239, 394, 475
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 362
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 6 cut(s) 128, 183, 196, 216, 254, 289
Lsp1109I GCAGC 2 cut(s) 136, 251
LweI GCATC 3 cut(s) 262, 331, 381
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 347, 449
MfeI CAATTG 2 cut(s) 137, 416
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 9 cut(s) 80, 85, 130, 137, 230, 284, 315, 416, 497
MnlI CCTC 3 cut(s) 34, 181, 289
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 2 cut(s) 84, 246
MspA1I CMGCKG 1 cut(s) 242
MunI CAATTG 2 cut(s) 137, 416
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 45, 403
PdmI GAANNNNTTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 151, 241
PspEI GGTNACC 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 45, 403
PspPI GGNCC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 84, 246
SatI GCNGC 2 cut(s) 150, 240
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 70
SetI ASST 6 cut(s) 45, 151, 205, 244, 300, 374
SfaNI GCATC 3 cut(s) 262, 331, 381
SinI GGWCC 1 cut(s) 200
Sse9I AATT 9 cut(s) 80, 85, 130, 137, 230, 284, 315, 416, 497
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 5, 488
TasI AATT 9 cut(s) 80, 85, 130, 137, 230, 284, 315, 416, 497
Tru1I TTAA 2 cut(s) 84, 246
Tru9I TTAA 2 cut(s) 84, 246
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 149, 239
TspDTI ATGAA 5 cut(s) 223, 347, 399, 443, 474
TspRI CASTG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 4 cut(s) 80, 230, 284, 315
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.