Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016125.1

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Reverse (-)

2491 .. 6575

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016125.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgagttttgctgctgtgttaatacccatgtgggtcttaaccaccgctctgattgtaaccataattgagggcaggccagacccaacagcttccaccacttctggccacattatgctacttgaggaacaacccattactcactcttctgcaaaaatggaagctcaatctccaggtatttcagcaatccagagtttccttctgtttttagctttcaagttgaatgaggtgaactggttgggaaaaattcggcatcaaaacatcatcaaacttttgggttactgtgttcatggaaaaacaaggtttcttgtgtatgaaatgatgcagaatggctccttacaaactcaattgtatggacccagtcatggatcagctttgacatggcatctgcggttgaaaatagctgttgatgttgccaggggattggaatatcttcatgagcactgcaatccgcctgcggtgcatagagacctgaagtcatctaacattcttctcgattccaattttaatgctaagctttcagattttggtcttactgtcacttcgggattgaagagtaaggagaacataaagctgtcaggaaatttgggctgtgtagcaccagaatataatttggatggtaagttaacggacaaaagtgatgtctatgctttcggagtagttctcttggagctcttgatgggaagaaagttggtggaacataaagcagcagatgaatcccaatctattatcacatgggccatgccccagctcactgacagatcaaggcttccaaacattgtggatcgcgtgataaaagataccatggatttaaaacacttataccaggttgctgccgtggcagtattatgtgtgcaaccagaaccaagttatcgacctttgataacggatgtactgcactcgctaatccctcttgtacctatggatcttggagggtcactgagaattgcagactgcataccctctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.56

Weight (kDa)

6.86

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	786
AciI	CCGC	4 cut(s)	45, 388, 449, 455
AclWI	GGATC	3 cut(s)	373, 789, 930
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	243, 580
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	891, 915
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	214, 220, 394, 550
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	3 cut(s)	169, 413, 822
AluBI	AGCT	9 cut(s)	89, 161, 209, 371, 401, 514, 571, 670, 748
AluI	AGCT	9 cut(s)	89, 161, 209, 371, 401, 514, 571, 670, 748
Alw21I	GWGCWC	2 cut(s)	441, 672
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	373, 789, 930
AoxI	GGCC	3 cut(s)	74, 103, 735
ApeKI	GCWGC	3 cut(s)	11, 704, 830
ApoI	RAATTY	2 cut(s)	243, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	624, 656
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	353, 735
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	672
Bbv12I	GWGCWC	2 cut(s)	441, 672
BbvI	GCAGC	2 cut(s)	716, 817
BccI	CCATC	2 cut(s)	608, 670
BceAI	ACGGC	1 cut(s)	818
BciT130I	CCWGG	3 cut(s)	171, 415, 824
BcoDI	GTCTC	1 cut(s)	459
BisI	GCNGC	3 cut(s)	12, 705, 831
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	13, 706, 832
Bme1390I	CCNGG	3 cut(s)	171, 415, 824
Bme18I	GGWCC	1 cut(s)	353
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	353, 735
BmiI	GGNNCC	2 cut(s)	331, 355
BmrFI	CCNGG	3 cut(s)	171, 415, 824
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	259, 309, 391
BmuI	ACTGGG	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	414, 801, 834
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	236, 357
BseBI	CCWGG	3 cut(s)	171, 415, 824
BseDI	CCNNGG	3 cut(s)	414, 801, 834
BseGI	GGATG	2 cut(s)	619, 892
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	2 cut(s)	236, 357
BseXI	GCAGC	2 cut(s)	716, 817
BseYI	CCCAGC	1 cut(s)	744
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	76, 105, 737
BsiHKAI	GWGCWC	2 cut(s)	441, 672
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	76, 105, 737
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	441, 672
Bsp143I	GATC	4 cut(s)	365, 758, 781, 922
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	4 cut(s)	45, 388, 449, 455
BspANI	GGCC	3 cut(s)	76, 105, 737
BspCNI	CTCAG	1 cut(s)	930
BspFNI	CGCG	1 cut(s)	786
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	331, 355
BspPI	GGATC	3 cut(s)	373, 789, 930
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	236, 357
BssECI	CCNNGG	3 cut(s)	414, 801, 834
BssMI	GATC	4 cut(s)	365, 758, 781, 922
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	3 cut(s)	171, 415, 824
Bst4CI	ACNGT	2 cut(s)	281, 535
Bst6I	CTCTTC	2 cut(s)	148, 545
BstC8I	GCNNGC	2 cut(s)	74, 453
BstDEI	CTNAG	2 cut(s)	510, 938
BstDSI	CCRYGG	2 cut(s)	801, 834
BstF5I	GGATG	2 cut(s)	619, 892
BstFNI	CGCG	1 cut(s)	786
BstKTI	GATC	4 cut(s)	368, 761, 784, 925
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	365, 758, 781, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 836
BstNI	CCWGG	3 cut(s)	171, 415, 824
BstSCI	CCNGG	3 cut(s)	169, 413, 822
BstUI	CGCG	1 cut(s)	786
BstV1I	GCAGC	2 cut(s)	716, 817
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	76, 105, 737
BtgI	CCRYGG	2 cut(s)	801, 834
BtsCI	GGATG	2 cut(s)	619, 892
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	439, 750, 935
Cac8I	GCNNGC	2 cut(s)	74, 453
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	353, 735
CsiI	ACCWGGT	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	890, 914
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	8 cut(s)	28, 287, 362, 378, 434, 732, 739, 802
CviQI	GTAC	2 cut(s)	890, 914
DdeI	CTNAG	2 cut(s)	510, 938
DpnI	GATC	4 cut(s)	367, 760, 783, 924
DpnII	GATC	4 cut(s)	365, 758, 781, 922
DraI	TTTAAA	1 cut(s)	810
DriI	GACNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	148, 545
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	2 cut(s)	148, 545
EciI	GGCGGA	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	670
EcoRII	CCWGG	3 cut(s)	169, 413, 822
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	8 cut(s)	31, 290, 365, 381, 437, 735, 742, 805
FatI	CATG	8 cut(s)	27, 286, 361, 377, 433, 731, 738, 801
Fnu4HI	GCNGC	3 cut(s)	12, 705, 831
FokI	GGATG	2 cut(s)	626, 899
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	3 cut(s)	12, 705, 831
GluI	GCNGC	3 cut(s)	12, 705, 831
GsaI	CCCAGC	1 cut(s)	748
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	76, 105, 737
Hin1II	CATG	8 cut(s)	31, 290, 365, 381, 437, 735, 742, 805
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	494, 713
HpaI	GTTAAC	1 cut(s)	624
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	229, 624
Hpy188I	TCNGA	3 cut(s)	51, 520, 653
Hpy188III	TCNNGA	6 cut(s)	187, 434, 491, 543, 576, 673
Hpy8I	GTNNAC	2 cut(s)	229, 624
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	281, 535
HpyCH4V	TGCA	8 cut(s)	149, 322, 444, 460, 853, 895, 947, 954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 836
HpyF3I	CTNAG	2 cut(s)	510, 938
Hsp92II	CATG	8 cut(s)	31, 290, 365, 381, 437, 735, 742, 805
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	365, 758, 781, 922
LmnI	GCTCC	2 cut(s)	335, 667
Lsp1109I	GCAGC	2 cut(s)	716, 817
LweI	GCATC	3 cut(s)	259, 309, 391
MabI	ACCWGGT	1 cut(s)	822
MaeIII	GTNAC	4 cut(s)	55, 275, 535, 933
MalI	GATC	4 cut(s)	367, 760, 783, 924
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	4 cut(s)	365, 758, 781, 922
MboII	GAAGA	5 cut(s)	135, 422, 479, 562, 693
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	2 cut(s)	441, 672
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	7 cut(s)	63, 243, 344, 499, 580, 607, 942
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	5 cut(s)	61, 115, 217, 918, 923
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	5 cut(s)	20, 38, 504, 623, 809
Msp20I	TGGCCA	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	171, 415, 824
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	3 cut(s)	171, 415, 824
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	2 cut(s)	457, 836
NcoI	CCATGG	1 cut(s)	801
NdeII	GATC	4 cut(s)	365, 758, 781, 922
NlaIII	CATG	8 cut(s)	31, 290, 365, 381, 437, 735, 742, 805
NlaIV	GGNNCC	2 cut(s)	331, 355
NmuCI	GTSAC	2 cut(s)	535, 933
PagI	TCATGA	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	494, 713
PflFI	GACNNNGTC	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	13, 706, 832
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	3 cut(s)	169, 413, 822
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	3 cut(s)	169, 413, 822
PspN4I	GGNNCC	2 cut(s)	331, 355
PspPI	GGNCC	2 cut(s)	353, 735
PsuI	RGATCY	1 cut(s)	922
PsyI	GACNNNGTC	1 cut(s)	357
RsaI	GTAC	2 cut(s)	891, 915
RsaNI	GTAC	2 cut(s)	890, 914
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	5 cut(s)	20, 38, 504, 623, 809
SatI	GCNGC	3 cut(s)	12, 705, 831
Sau3AI	GATC	4 cut(s)	365, 758, 781, 922
Sau96I	GGNCC	2 cut(s)	353, 735
ScrFI	CCNGG	3 cut(s)	171, 415, 824
SduI	GDGCHC	2 cut(s)	441, 672
SexAI	ACCWGGT	1 cut(s)	822
SfaNI	GCATC	3 cut(s)	259, 309, 391
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	63, 243, 344, 499, 580, 607, 942
SsiI	CCGC	4 cut(s)	45, 388, 449, 455
SstI	GAGCTC	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	169, 413, 822
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	2 cut(s)	281, 535
TaqI	TCGA	2 cut(s)	492, 871
TasI	AATT	7 cut(s)	63, 243, 344, 499, 580, 607, 942
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	2 cut(s)	494, 713
Tru1I	TTAA	5 cut(s)	20, 38, 504, 623, 809
Tru9I	TTAA	5 cut(s)	20, 38, 504, 623, 809
TscAI	CASTG	3 cut(s)	446, 757, 942
TseFI	GTSAC	2 cut(s)	535, 933
TseI	GCWGC	3 cut(s)	11, 704, 830
Tsp45I	GTSAC	2 cut(s)	535, 933
TspDTI	ATGAA	4 cut(s)	275, 327, 422, 726
TspGWI	ACGGA	2 cut(s)	641, 899
TspRI	CASTG	3 cut(s)	446, 757, 942
Tth111I	GACNNNGTC	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	243, 580
XmnI	GAANNNNTTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.