Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Reverse (-)

48197017 .. 48199620

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGTTTTGCTGCTGTGTTAATACCCATGTGGGTCTTAACCACCGCTCTGATTGTAACCATAATTGAGGGCAGGCCAGACCCAACAGCTTCCGAACAACCCATTACTCACTCTTCTGCAAAAATGGAAGCTCAATCTCCAGGAGTCCCTGAGGTTAGAGTAGTTCACCATCAAGATTTGAACAAGAGCATTCTGATAGCACTCATTGTTGCTTCCACACTCCTTGTTGGAATTCTTCTGTTCCTGTCATGTTGTTGGATCTATAGACAGAAAATGTCGAAACACTCTATTGGGAAAAGGCAAAAGACAAACGAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTCTGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCGGCTGTTAAGAAAGTAAACGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTCGGCATCAAAACATCATCAAACTTTTGGGTTACTGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGGACCCAGTCATGGATCAGCTTTGACATGGCATCTGCGGTTGAAAATAGCTGTTGATGTTGCCAGGGGATTGGAATATCTTCATGAGCACTGCAATCCGCCTGCGGTGCATAGAGACCTGAAGTCATCTAACATTCTTCTCGATTCCAATTTTAATGCTAAGCTTTCAGATTTTGGTCTTACTGTCACTTCGGGATTGAAGAGTAAGGAGAACATAAAGCTGTCAGGAAATTTGGGCTGTGTAGCACCAGAATATAATTTGGATGGATTTGACACTCCTTGCATTTGCCTGAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

331

Amino Acids

36.66

Weight (kDa)

8.88

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	147 - 316	9.1e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	150 - 299	1.7e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	5 cut(s)	45, 512, 733, 794, 800
AclWI	GGATC	2 cut(s)	266, 718
AcsI	RAATTY	6 cut(s)	231, 353, 503, 557, 588, 925
AcuI	CTGAAG	1 cut(s)	836
AcyI	GRCGYC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	5 cut(s)	181, 353, 403, 739, 895
AhdI	GACNNNNNGTC	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	139, 758
AluBI	AGCT	7 cut(s)	89, 131, 422, 716, 746, 859, 916
AluI	AGCT	7 cut(s)	89, 131, 422, 716, 746, 859, 916
Alw21I	GWGCWC	2 cut(s)	343, 786
Alw26I	GTCTC	1 cut(s)	804
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	266, 718
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	11, 422
ApoI	RAATTY	6 cut(s)	231, 353, 503, 557, 588, 925
Asp700I	GAANNNNTTC	2 cut(s)	385, 774
AspS9I	GGNCC	2 cut(s)	473, 698
AsuHPI	GGTGA	3 cut(s)	158, 470, 583
AvaII	GGWCC	2 cut(s)	473, 698
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	343
Bbv12I	GWGCWC	2 cut(s)	343, 786
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	4 cut(s)	177, 491, 953, 984
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	2 cut(s)	141, 760
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	3 cut(s)	12, 423, 513
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	3 cut(s)	13, 424, 514
Bme1390I	CCNGG	2 cut(s)	141, 760
Bme18I	GGWCC	2 cut(s)	473, 698
BmeRI	GACNNNNNGTC	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	473, 698
BmiI	GGNNCC	3 cut(s)	318, 676, 700
BmrFI	CCNGG	2 cut(s)	141, 760
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	4 cut(s)	535, 604, 654, 736
BmuI	ACTGGG	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	581, 702
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	141, 760
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	2 cut(s)	550, 964
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	141, 977
BseNI	ACTGG	2 cut(s)	581, 702
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	343, 786
BslFI	GGGAC	2 cut(s)	131, 340
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	804
BsmFI	GGGAC	2 cut(s)	131, 340
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	343, 786
Bsp143I	GATC	2 cut(s)	258, 710
Bsp1720I	GCTNAGC	1 cut(s)	855
BspACI	CCGC	5 cut(s)	45, 512, 733, 794, 800
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	142, 978
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	3 cut(s)	318, 676, 700
BspPI	GGATC	2 cut(s)	266, 718
BspTNI	GGTCTC	1 cut(s)	804
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	581, 702
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	2 cut(s)	258, 710
BssNI	GRCGYC	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	141, 760
Bst4CI	ACNGT	2 cut(s)	626, 880
Bst6I	CTCTTC	2 cut(s)	118, 890
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	74, 798
BstDEI	CTNAG	3 cut(s)	150, 855, 986
BstF5I	GGATG	2 cut(s)	550, 964
BstKTI	GATC	2 cut(s)	261, 713
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	2 cut(s)	258, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	802
BstNI	CCWGG	2 cut(s)	141, 760
BstSCI	CCNGG	2 cut(s)	139, 758
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	550, 964
BtsI	GCAGTG	1 cut(s)	784
BtsIMutI	CAGTG	2 cut(s)	445, 784
Cac8I	GCNNGC	2 cut(s)	74, 798
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	473, 698
CseI	GACGC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	6 cut(s)	28, 249, 632, 707, 723, 779
DdeI	CTNAG	3 cut(s)	150, 855, 986
DpnI	GATC	2 cut(s)	260, 712
DpnII	GATC	2 cut(s)	258, 710
DriI	GACNNNNNGTC	1 cut(s)	817
Eam1104I	CTCTTC	2 cut(s)	118, 890
Eam1105I	GACNNNNNGTC	1 cut(s)	817
EarI	CTCTTC	2 cut(s)	118, 890
EciI	GGCGGA	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	804
Eco47I	GGWCC	2 cut(s)	473, 698
Eco57I	CTGAAG	1 cut(s)	836
Eco81I	CCTNAGG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	139, 758
FaeI	CATG	6 cut(s)	31, 252, 635, 710, 726, 782
FaqI	GGGAC	2 cut(s)	131, 340
FatI	CATG	6 cut(s)	27, 248, 631, 706, 722, 778
Fnu4HI	GCNGC	3 cut(s)	12, 423, 513
FokI	GGATG	2 cut(s)	557, 971
Fsp4HI	GCNGC	3 cut(s)	12, 423, 513
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	3 cut(s)	12, 423, 513
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	76
HgaI	GACGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	31, 252, 635, 710, 726, 782
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	2 cut(s)	144, 839
HphI	GGTGA	3 cut(s)	158, 470, 583
Hpy166II	GTNNAC	5 cut(s)	166, 341, 481, 529, 574
Hpy188I	TCNGA	4 cut(s)	51, 94, 195, 865
Hpy188III	TCNNGA	6 cut(s)	173, 471, 779, 836, 888, 921
Hpy8I	GTNNAC	5 cut(s)	166, 341, 481, 529, 574
HpyCH4III	ACNGT	2 cut(s)	626, 880
HpyCH4V	TGCA	7 cut(s)	119, 341, 425, 667, 789, 805, 978
HpyF10VI	GCNNNNNNNGC	1 cut(s)	802
HpyF3I	CTNAG	3 cut(s)	150, 855, 986
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	31, 252, 635, 710, 726, 782
Kzo9I	GATC	2 cut(s)	258, 710
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	4 cut(s)	535, 604, 654, 736
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	55, 620, 880
MalI	GATC	2 cut(s)	260, 712
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	2 cut(s)	258, 710
MboII	GAAGA	5 cut(s)	105, 227, 767, 824, 907
MfeI	CAATTG	2 cut(s)	410, 689
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	343, 786
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	2 cut(s)	208, 236
MnlI	CCTC	5 cut(s)	61, 145, 307, 454, 562
MroXI	GAANNNNTTC	2 cut(s)	385, 774
MseI	TTAA	5 cut(s)	20, 38, 357, 519, 849
MspR9I	CCNGG	2 cut(s)	141, 760
MunI	CAATTG	2 cut(s)	410, 689
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	141, 760
MwoI	GCNNNNNNNGC	1 cut(s)	802
NdeII	GATC	2 cut(s)	258, 710
NlaIII	CATG	6 cut(s)	31, 252, 635, 710, 726, 782
NlaIV	GGNNCC	3 cut(s)	318, 676, 700
NmuCI	GTSAC	1 cut(s)	880
PagI	TCATGA	1 cut(s)	778
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	385, 774
PfeI	GAWTC	1 cut(s)	839
PflFI	GACNNNGTC	1 cut(s)	702
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	13, 424, 514
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	139, 758
PspGI	CCWGG	2 cut(s)	139, 758
PspN4I	GGNNCC	3 cut(s)	318, 676, 700
PspPI	GGNCC	2 cut(s)	473, 698
PsuI	RGATCY	1 cut(s)	258
PsyI	GACNNNGTC	1 cut(s)	702
SaqAI	TTAA	5 cut(s)	20, 38, 357, 519, 849
SatI	GCNGC	3 cut(s)	12, 423, 513
Sau3AI	GATC	2 cut(s)	258, 710
Sau96I	GGNCC	2 cut(s)	473, 698
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	141, 760
SduI	GDGCHC	2 cut(s)	343, 786
SfaNI	GCATC	4 cut(s)	535, 604, 654, 736
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	473, 698
SsiI	CCGC	5 cut(s)	45, 512, 733, 794, 800
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	139, 758
TaaI	ACNGT	2 cut(s)	626, 880
TaqI	TCGA	2 cut(s)	278, 837
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	839
Tru1I	TTAA	5 cut(s)	20, 38, 357, 519, 849
Tru9I	TTAA	5 cut(s)	20, 38, 357, 519, 849
TscAI	CASTG	2 cut(s)	445, 791
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	2 cut(s)	11, 422
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	4 cut(s)	496, 620, 672, 767
TspRI	CASTG	2 cut(s)	445, 791
Tth111I	GACNNNGTC	1 cut(s)	702
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	473, 698
XapI	RAATTY	6 cut(s)	231, 353, 503, 557, 588, 925
XmnI	GAANNNNTTC	2 cut(s)	385, 774
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.