Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003605.1

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Forward (+)

134227 .. 134822

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003605.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtcgaaacactctattgggaaaaggcaaaagacaaacgaggttccaatagggacgccattgagtgcacttatggttgaatttaattccttgatgttggggaatagaaagggttcggttgttgtattcaattatcaattgctggaagctgcaacaaacaagttcagtgaaagtaatattttgggtgagggtagttctggacctgtttacagggctagttttgatggaaaattcattgcagctgttaagaaagtaaacggcataagacaggatgctgaaagagaatttgagaatgaggtgaactggttgggaaaaattcggcatcaaaacatcatcaaacttttgggttactgtgttcatggaaaaacaaggtttcttgtgtatgatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.52

Weight (kDa)

9.59

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	80, 230, 284, 315
AcyI	GRCGYC	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	80, 130
AluBI	AGCT	2 cut(s)	149, 242
AluI	AGCT	2 cut(s)	149, 242
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	149, 239
ApoI	RAATTY	4 cut(s)	80, 230, 284, 315
Asp700I	GAANNNNTTC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	197, 310
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	136, 251
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	2 cut(s)	150, 240
BlsI	GCNGC	2 cut(s)	151, 241
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	3 cut(s)	262, 331, 376
BsaHI	GRCGYC	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	136, 251
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	308
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	136, 251
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	3 cut(s)	149, 215, 242
CviKI_1	RGCY	3 cut(s)	149, 215, 242
Eco47I	GGWCC	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	391
FaeI	CATG	1 cut(s)	362
FaiI	YATR	5 cut(s)	74, 263, 360, 384, 391
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	150, 240
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	150, 240
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	150, 240
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	197, 310
Hpy166II	GTNNAC	4 cut(s)	68, 208, 256, 301
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	4 cut(s)	68, 208, 256, 301
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	68, 152, 239, 389
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	362
LpnPI	CCDG	6 cut(s)	128, 183, 196, 216, 254, 289
Lsp1109I	GCAGC	2 cut(s)	136, 251
LweI	GCATC	3 cut(s)	262, 331, 376
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	347
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	7 cut(s)	80, 85, 130, 137, 230, 284, 315
MnlI	CCTC	3 cut(s)	34, 181, 289
Mph1103I	ATGCAT	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	2 cut(s)	84, 246
MspA1I	CMGCKG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	137
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	151, 241
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	84, 246
SatI	GCNGC	2 cut(s)	150, 240
Sau96I	GGNCC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	45, 151, 205, 244, 300, 374
SfaNI	GCATC	3 cut(s)	262, 331, 376
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	7 cut(s)	80, 85, 130, 137, 230, 284, 315
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	5
TasI	AATT	7 cut(s)	80, 85, 130, 137, 230, 284, 315
Tru1I	TTAA	2 cut(s)	84, 246
Tru9I	TTAA	2 cut(s)	84, 246
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	149, 239
TspDTI	ATGAA	2 cut(s)	223, 347
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	4 cut(s)	80, 230, 284, 315
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.