Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004113

Physical Location & Seq

Genomic Coordinates Reverse (-)

51808336 .. 51812844

Gene Structure 4509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCGAAACACTCTATTGGGAAAAGGCAAAAGACAAACGAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTCTGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAAACGGCATAAGACAGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGGGAAAAATTCGGCATCAAAACATCATCAAACTTTTGGGTTACTGTGTTCATGGAAAAACAAGGTTTCTTGTGTATGAAATGATGCAGAATGGCTCCTTACAAACTCAATTGTATGGACCCAGTCATGGATCAGCTTTGACATGGCATCTGCGGTTGAAAATAGCTGTTGATGTTGCCAGGGGATTGGAATATCTTCATGAGCACTGCAATCCGCCTGCGGTGCATAGAGACCTGAAGTCATCTAACATTCTTCTCGATTCCAATTTTAATGCTAAGCTTTCAGATTTTGGTCTTACTGTCACTTTGGGATTGAAGAGTAAGGAGAACATAAAGCTGTCAGGAAATTTGGGCTGTGTAGCACCAGAATATAATTTGGATGGTAAGTTAACGGACAAAAGTGATGTCTATGCTTTCGGAGTAGTTCTCTTGGAGCTCTTGATGGGAAGAAAGTTGGTGGAACATAAAGCAGCAGATGAATCCCAATCTATTATCACATGGGCCATGCCCCAGCTCACTGACAGATCAAGGCTTCCAAACATTGTGGATCGCGTGATAAAAGATACCATGGATTTAAAACACTTATACCAGGTTGCTGCCGTGGCAGTATTATGTGTGCAACCTGAACCAAGTTATCGACCTTTGATAACGGATGTACTGCACTCGCTAATCCCTCTTGTACCTATGGATCTTGGAGGGTCACTGAGAATTGCAGACTGCATACCCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.35

Weight (kDa)

8.66

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	56 - 322	1.3e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	59 - 289	2.7e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80640 AT1G80640
fragaria_vesca	FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910 FvH4_6g28910
malus_domestica	MD17G1219900.v1.1
prunus_persica	Prupe.3G095600_v2.0.a1
pyrus_communis	pycom17g22480
rosa_chinensis	RchiOBHm_Chr2g0133481 RchiOBHm_Chr7g0190981 RchiOBHm_Chr7g0202421 RchiOBHm_Chr7g0239591
rosa_laevigata	RLG00000019341
rosa_multiflora	Rmu_sc0001118.1_g000006 Rmu_sc0003605.1_g000031 Rmu_sc0005071.1_g000009 Rmu_sc0016125.1_g000002 Rmu_sc0017323.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111050 Rroxscaffold_6G00388930
rosa_rugosa	Rorug02G0312100 Rorug02G0312200
rosa_samantha	Rh2BG370600 Rh2CG348100 Rh2DG387500
rosa_wichuraiana	Rw2G029740 Rw6G011840 Rw6G012150 Rw7G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	858
AciI	CCGC	3 cut(s)	460, 521, 527
AclWI	GGATC	3 cut(s)	445, 861, 1002
AcsI	RAATTY	5 cut(s)	80, 230, 284, 315, 652
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	963, 987
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	80, 130, 466, 622
AhdI	GACNNNNNGTC	1 cut(s)	544
AjnI	CCWGG	2 cut(s)	485, 894
AluBI	AGCT	8 cut(s)	149, 242, 443, 473, 586, 643, 742, 820
AluI	AGCT	8 cut(s)	149, 242, 443, 473, 586, 643, 742, 820
Alw21I	GWGCWC	3 cut(s)	70, 513, 744
Alw26I	GTCTC	1 cut(s)	531
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	445, 861, 1002
AoxI	GGCC	1 cut(s)	807
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	149, 239, 776, 902
ApoI	RAATTY	5 cut(s)	80, 230, 284, 315, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
Asp700I	GAANNNNTTC	2 cut(s)	112, 501
AspS9I	GGNCC	3 cut(s)	200, 425, 807
AsuHPI	GGTGA	2 cut(s)	197, 310
AvaII	GGWCC	2 cut(s)	200, 425
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	744
Bbv12I	GWGCWC	3 cut(s)	70, 513, 744
BbvI	GCAGC	4 cut(s)	136, 251, 788, 889
BccI	CCATC	3 cut(s)	218, 680, 742
BceAI	ACGGC	2 cut(s)	274, 890
BciT130I	CCWGG	2 cut(s)	487, 896
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	4 cut(s)	150, 240, 777, 903
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	4 cut(s)	151, 241, 778, 904
Bme1390I	CCNGG	2 cut(s)	487, 896
Bme18I	GGWCC	2 cut(s)	200, 425
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	200, 425, 807
BmiI	GGNNCC	3 cut(s)	45, 403, 427
BmrFI	CCNGG	2 cut(s)	487, 896
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	4 cut(s)	262, 331, 381, 463
BmuI	ACTGGG	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	486, 873, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	308, 429
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	487, 896
BseDI	CCNNGG	3 cut(s)	486, 873, 906
BseGI	GGATG	3 cut(s)	277, 691, 964
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	1001
BseNI	ACTGG	2 cut(s)	308, 429
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	136, 251, 788, 889
BseYI	CCCAGC	1 cut(s)	816
BsgI	GTGCAG	1 cut(s)	950
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	809
BsiHKAI	GWGCWC	3 cut(s)	70, 513, 744
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	809
Bso31I	GGTCTC	1 cut(s)	531
Bsp1286I	GDGCHC	3 cut(s)	70, 513, 744
Bsp143I	GATC	4 cut(s)	437, 830, 853, 994
Bsp1720I	GCTNAGC	1 cut(s)	582
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	3 cut(s)	460, 521, 527
BspANI	GGCC	1 cut(s)	809
BspCNI	CTCAG	1 cut(s)	1002
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	45, 403, 427
BspPI	GGATC	3 cut(s)	445, 861, 1002
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	308, 429
BssECI	CCNNGG	3 cut(s)	486, 873, 906
BssMI	GATC	4 cut(s)	437, 830, 853, 994
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	2 cut(s)	487, 896
Bst4CI	ACNGT	2 cut(s)	353, 607
Bst6I	CTCTTC	1 cut(s)	617
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	582, 1010
BstDSI	CCRYGG	2 cut(s)	873, 906
BstF5I	GGATG	3 cut(s)	277, 691, 964
BstFNI	CGCG	1 cut(s)	858
BstKTI	GATC	4 cut(s)	440, 833, 856, 997
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	4 cut(s)	437, 830, 853, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 908
BstNI	CCWGG	2 cut(s)	487, 896
BstSCI	CCNGG	2 cut(s)	485, 894
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	136, 251, 788, 889
BstX2I	RGATCY	1 cut(s)	994
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	994
BsuRI	GGCC	1 cut(s)	809
BtgI	CCRYGG	2 cut(s)	873, 906
BtsCI	GGATG	3 cut(s)	277, 691, 964
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	4 cut(s)	172, 511, 822, 1007
Cac8I	GCNNGC	1 cut(s)	525
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	200, 425, 807
CseI	GACGC	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	894
Csp6I	GTAC	2 cut(s)	962, 986
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	7 cut(s)	359, 434, 450, 506, 804, 811, 874
CviQI	GTAC	2 cut(s)	962, 986
DdeI	CTNAG	2 cut(s)	582, 1010
DpnI	GATC	4 cut(s)	439, 832, 855, 996
DpnII	GATC	4 cut(s)	437, 830, 853, 994
DraI	TTTAAA	1 cut(s)	882
DriI	GACNNNNNGTC	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	617
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	617
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	200, 425
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	742
EcoRII	CCWGG	2 cut(s)	485, 894
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	7 cut(s)	362, 437, 453, 509, 807, 814, 877
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	7 cut(s)	358, 433, 449, 505, 803, 810, 873
Fnu4HI	GCNGC	4 cut(s)	150, 240, 777, 903
FokI	GGATG	3 cut(s)	284, 698, 971
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	4 cut(s)	150, 240, 777, 903
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	4 cut(s)	150, 240, 777, 903
GsaI	CCCAGC	1 cut(s)	820
HaeIII	GGCC	1 cut(s)	809
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	7 cut(s)	362, 437, 453, 509, 807, 814, 877
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	566, 785
HpaI	GTTAAC	1 cut(s)	696
HphI	GGTGA	2 cut(s)	197, 310
Hpy166II	GTNNAC	5 cut(s)	68, 208, 256, 301, 696
Hpy188I	TCNGA	2 cut(s)	592, 725
Hpy188III	TCNNGA	5 cut(s)	198, 506, 563, 648, 745
Hpy8I	GTNNAC	5 cut(s)	68, 208, 256, 301, 696
HpyCH4III	ACNGT	2 cut(s)	353, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 908
HpyF3I	CTNAG	2 cut(s)	582, 1010
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	7 cut(s)	362, 437, 453, 509, 807, 814, 877
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	437, 830, 853, 994
LmnI	GCTCC	2 cut(s)	407, 739
Lsp1109I	GCAGC	4 cut(s)	136, 251, 788, 889
LweI	GCATC	4 cut(s)	262, 331, 381, 463
MabI	ACCWGGT	1 cut(s)	894
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	347, 607, 1005
MalI	GATC	4 cut(s)	439, 832, 855, 996
MboI	GATC	4 cut(s)	437, 830, 853, 994
MboII	GAAGA	4 cut(s)	494, 551, 634, 765
MfeI	CAATTG	2 cut(s)	137, 416
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	3 cut(s)	70, 513, 744
MnlI	CCTC	5 cut(s)	34, 181, 289, 990, 995
MroXI	GAANNNNTTC	2 cut(s)	112, 501
MseI	TTAA	5 cut(s)	84, 246, 576, 695, 881
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	487, 896
MunI	CAATTG	2 cut(s)	137, 416
MvaI	CCWGG	2 cut(s)	487, 896
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	529, 908
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	4 cut(s)	437, 830, 853, 994
NlaIII	CATG	7 cut(s)	362, 437, 453, 509, 807, 814, 877
NlaIV	GGNNCC	3 cut(s)	45, 403, 427
NmuCI	GTSAC	2 cut(s)	607, 1005
PagI	TCATGA	1 cut(s)	505
PdmI	GAANNNNTTC	2 cut(s)	112, 501
PfeI	GAWTC	2 cut(s)	566, 785
PflFI	GACNNNGTC	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	151, 241, 778, 904
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	485, 894
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	2 cut(s)	485, 894
PspN4I	GGNNCC	3 cut(s)	45, 403, 427
PspPI	GGNCC	3 cut(s)	200, 425, 807
PsuI	RGATCY	1 cut(s)	994
PsyI	GACNNNGTC	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	963, 987
RsaNI	GTAC	2 cut(s)	962, 986
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	84, 246, 576, 695, 881
SatI	GCNGC	4 cut(s)	150, 240, 777, 903
Sau3AI	GATC	4 cut(s)	437, 830, 853, 994
Sau96I	GGNCC	3 cut(s)	200, 425, 807
ScrFI	CCNGG	2 cut(s)	487, 896
SduI	GDGCHC	3 cut(s)	70, 513, 744
SexAI	ACCWGGT	1 cut(s)	894
SfaNI	GCATC	4 cut(s)	262, 331, 381, 463
SinI	GGWCC	2 cut(s)	200, 425
SsiI	CCGC	3 cut(s)	460, 521, 527
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	485, 894
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	353, 607
TaqI	TCGA	3 cut(s)	5, 564, 943
TatI	WGTACW	1 cut(s)	961
TfiI	GAWTC	2 cut(s)	566, 785
Tru1I	TTAA	5 cut(s)	84, 246, 576, 695, 881
Tru9I	TTAA	5 cut(s)	84, 246, 576, 695, 881
TscAI	CASTG	4 cut(s)	172, 518, 829, 1014
TseFI	GTSAC	2 cut(s)	607, 1005
TseI	GCWGC	4 cut(s)	149, 239, 776, 902
Tsp45I	GTSAC	2 cut(s)	607, 1005
TspDTI	ATGAA	5 cut(s)	223, 347, 399, 494, 798
TspGWI	ACGGA	2 cut(s)	713, 971
TspRI	CASTG	4 cut(s)	172, 518, 829, 1014
Tth111I	GACNNNGTC	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	200, 425
XapI	RAATTY	5 cut(s)	80, 230, 284, 315, 652
XmnI	GAANNNNTTC	2 cut(s)	112, 501
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.