FvH4_6g31640

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008151
Physical Location & Seq
Forward (+)
24739849 .. 24740930
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31640.t1

Sequence Viewer

Length: 435 bp
ATGAAATTGATAGTAAACTTGCTTGTTGCACAGAATTATGTGACAGGTTGTTCGGTGGCATACTGGTCACTAGATCTGTTACAGATTCCGGTGACTGTTGCAGTACCTTCATATGAAGTAATTAAACTGTCCCAAGGAAAGAGAATACTCACATCAAAGGGATCAACAACAGCAGCTGGCCTAGTTGGTGGACTGCTTGGTCTTGGTGGAGGGTTTATTATGGGTCCATTGTTTTTGGAAATGGGAATTTCAGCTCAGGTGTCAAGTGCCACAGCCACGTTTATCATGACATTCTCTTCATCCATGTCTGTGGTAGAATACTACCTCCTAAAACAATTTCCAGTTCCTCATGGAGGGGTAGGCATAGCAAACCTGGTTAAAAAGATTCATCACAAGGAGTCCTTGGGGTTTGAAAACATGTGCAGCACTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

145

Amino Acids

15.28

Weight (kDa)

8.95

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 57 - 111 3.6e-08 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 198
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 2 cut(s) 176, 254
AluI AGCT 2 cut(s) 176, 254
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 173, 423
ApoI RAATTY 1 cut(s) 246
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 374
BfaI CTAG 2 cut(s) 71, 182
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 174, 424
BlsI GCNGC 2 cut(s) 175, 425
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 133, 402
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 68, 341
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 133, 402
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 68, 341
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 73, 161
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 68, 341
BssECI CCNNGG 2 cut(s) 133, 402
BssMI GATC 2 cut(s) 73, 161
BssT1I CCWWGG 2 cut(s) 133, 402
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 97, 129
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 255
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 2 cut(s) 76, 164
BstMBI GATC 2 cut(s) 73, 161
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 176
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 224
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 1 cut(s) 104
CviAII CATG 4 cut(s) 286, 304, 350, 418
CviJI RGCY 4 cut(s) 176, 180, 254, 275
CviKI_1 RGCY 4 cut(s) 176, 180, 254, 275
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 75, 163
DpnII GATC 2 cut(s) 73, 161
DrdI GACNNNNNNGTC 1 cut(s) 198
DseDI GACNNNNNNGTC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 133, 402
Eco47I GGWCC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 133, 402
ErhI CCWWGG 2 cut(s) 133, 402
FaeI CATG 4 cut(s) 289, 307, 353, 421
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 115
FatI CATG 4 cut(s) 285, 303, 349, 417
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 174, 424
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 174, 424
FspBI CTAG 2 cut(s) 71, 182
GluI GCNGC 2 cut(s) 174, 424
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 89
Hin1II CATG 4 cut(s) 289, 307, 353, 421
HinfI GANTC 3 cut(s) 85, 385, 398
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 16, 191
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 16, 191
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 97, 129
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 29, 101, 423
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 4 cut(s) 289, 307, 353, 421
Kzo9I GATC 2 cut(s) 73, 161
LpnPI CCDG 8 cut(s) 30, 49, 102, 162, 242, 354, 359, 386
Lsp1109I GCAGC 1 cut(s) 185
MabI ACCWGGT 1 cut(s) 372
MaeI CTAG 2 cut(s) 71, 182
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 4 cut(s) 40, 66, 78, 91
MalI GATC 2 cut(s) 75, 163
MboI GATC 2 cut(s) 73, 161
MboII GAAGA 1 cut(s) 288
MflI RGATCY 1 cut(s) 73
MluCI AATT 5 cut(s) 5, 34, 120, 246, 335
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 4 cut(s) 203, 335, 347, 357
MseI TTAA 3 cut(s) 123, 378, 433
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 73, 161
NlaIII CATG 4 cut(s) 289, 307, 353, 421
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 3 cut(s) 40, 66, 91
NspI RCATGY 1 cut(s) 421
PagI TCATGA 1 cut(s) 285
PciI ACATGT 1 cut(s) 417
PfeI GAWTC 2 cut(s) 85, 385
PkrI GCNGC 2 cut(s) 175, 425
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 123, 378, 433
SatI GCNGC 2 cut(s) 174, 424
Sau3AI GATC 2 cut(s) 73, 161
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 374
SetI ASST 8 cut(s) 49, 109, 178, 256, 261, 281, 327, 375
SexAI ACCWGGT 1 cut(s) 372
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 5 cut(s) 5, 34, 120, 246, 335
SspMI CTAG 2 cut(s) 71, 182
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 2 cut(s) 133, 402
TaaI ACNGT 2 cut(s) 97, 129
TaiI ACGT 1 cut(s) 281
TasI AATT 5 cut(s) 5, 34, 120, 246, 335
TfiI GAWTC 2 cut(s) 85, 385
Tru1I TTAA 3 cut(s) 123, 378, 433
Tru9I TTAA 3 cut(s) 123, 378, 433
TseFI GTSAC 3 cut(s) 40, 66, 91
TseI GCWGC 2 cut(s) 173, 423
Tsp45I GTSAC 3 cut(s) 40, 66, 91
TspDTI ATGAA 5 cut(s) 17, 99, 129, 288, 377
VpaK11BI GGWCC 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 1 cut(s) 246
XceI RCATGY 1 cut(s) 421
XspI CTAG 2 cut(s) 71, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.