Rroxscaffold_7G00210400

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008151
Physical Location & Seq
Forward (+)
60819283 .. 60822432
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210400.1

Sequence Viewer

Length: 723 bp
ATGGGTGAATGTGAATCTGCTCTTTGGGACCAATCTCATGATACAGCTGAATGTGAATCTGCTCTTAAAGCCCTGTATCAAATAAGGTCATCAGGGACAGTTGTTGGACTGCTTGGTCTTGGTGGAGGTTTTGTTATGGGCCCACTCTTTTTGGAGATGGGTATCCCTCCTCAGGTGTCAAGTGCCACAGCCACCTTCATCATGACATTCTCTTCATCCATGTCGGTGGTAGAATACTACCTCCTAAAACGATTTTCGATTCCTTATGTTATTGATCTTGTAGATTGGGTCGTCTACTGTCATAATCTGTTTCTAGTATCAACAATGATATTGTCCTCCAATTATTTGACTGGAACACATAACAAAGACATTCGCTGGGCTAAGAAATCTAATAGACTTGCTCACGTCAAGGAGCTTGAGGAAGAAGTGAAGCCTTTAAAGAATCTGTCTCATCCAAACATTGTTATATCTGGGTACGGTGAGGGAGGAGGAAACATTGTTGCCGAGGTTTTGAACTCTTCTCTGCTAAATCCATCTACTCGGGACAAATGGGAAACTTTGGTACCCACAGCACAAATCTCTTCTCGACAAAGAAGGGAAGAGCATGTTCCCCAAGTGCTTTTGGACAGAGTATTTGCTGCCCATTCTTACTGGTGCCAACACCGGGCTAAGCAACATGGCAAGCACCAGGCTTGTGTCCCGGGATCACGAGAGAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

240

Amino Acids

26.69

Weight (kDa)

6.79

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 32 - 83 5.3e-08 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 114
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 562, 654
AccI GTMKAC 1 cut(s) 294
AclWI GGATC 1 cut(s) 712
AfaI GTAC 2 cut(s) 476, 564
AfiI CCNNNNNNNGG 2 cut(s) 172, 664
AgsI TTSAA 1 cut(s) 514
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 3 cut(s) 47, 415, 720
AluI AGCT 3 cut(s) 47, 415, 720
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 712
Ama87I CYCGRG 2 cut(s) 540, 700
AoxI GGCC 1 cut(s) 139
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 638
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp718I GGTACC 1 cut(s) 562
AspS9I GGNCC 3 cut(s) 28, 139, 140
AsuC2I CCSGG 3 cut(s) 665, 701, 702
AsuHPI GGTGA 2 cut(s) 17, 491
AvaI CYCGRG 2 cut(s) 540, 700
AvaII GGWCC 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BanI GGYRCC 2 cut(s) 562, 654
BanII GRGCYC 1 cut(s) 143
BauI CACGAG 1 cut(s) 708
BbvI GCAGC 1 cut(s) 625
BccI CCATC 2 cut(s) 151, 541
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 3 cut(s) 665, 701, 702
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 314, 721
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 1 cut(s) 639
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 4 cut(s) 665, 689, 701, 702
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 2 cut(s) 540, 700
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 3 cut(s) 28, 139, 140
BmiI GGNNCC 4 cut(s) 29, 141, 564, 656
BmrFI CCNGG 4 cut(s) 665, 689, 701, 702
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 3 cut(s) 665, 701, 702
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 504, 700
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 664
Bse1I ACTGG 2 cut(s) 355, 656
Bse21I CCTNAGG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 2 cut(s) 504, 700
BseGI GGATG 2 cut(s) 215, 451
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 172, 664
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 355, 656
BseRI GAGGAG 2 cut(s) 159, 501
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 625
BseYI CCCAGC 1 cut(s) 375
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 2 cut(s) 562, 654
BsiHKCI CYCGRG 2 cut(s) 540, 700
BsiSI CCGG 2 cut(s) 664, 701
BslFI GGGAC 4 cut(s) 41, 109, 557, 683
BslI CCNNNNNNNGG 2 cut(s) 172, 664
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 4 cut(s) 41, 109, 557, 683
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 2 cut(s) 540, 700
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 274, 704
Bsp1720I GCTNAGC 1 cut(s) 669
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 184
BspHI TCATGA 2 cut(s) 37, 201
BspLI GGNNCC 4 cut(s) 29, 141, 564, 656
BspPI GGATC 1 cut(s) 712
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 2 cut(s) 562, 654
BsrI ACTGG 2 cut(s) 355, 656
BssECI CCNNGG 2 cut(s) 504, 700
BssMI GATC 2 cut(s) 274, 704
BssSI CACGAG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 3 cut(s) 100, 299, 479
Bst6I CTCTTC 4 cut(s) 217, 523, 586, 594
BstC8I GCNNGC 1 cut(s) 683
BstDEI CTNAG 3 cut(s) 171, 381, 669
BstF5I GGATG 2 cut(s) 215, 451
BstKTI GATC 2 cut(s) 277, 707
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 274, 704
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 663, 687, 699, 700
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 141
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 215, 451
Cac8I GCNNGC 1 cut(s) 683
CciI TCATGA 2 cut(s) 37, 201
Cfr13I GGNCC 3 cut(s) 28, 139, 140
Cfr9I CCCGGG 1 cut(s) 700
Csp6I GTAC 2 cut(s) 475, 563
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 5 cut(s) 38, 202, 220, 605, 677
CviQI GTAC 2 cut(s) 475, 563
DdeI CTNAG 3 cut(s) 171, 381, 669
DpnI GATC 2 cut(s) 276, 706
DpnII GATC 2 cut(s) 274, 704
DraI TTTAAA 1 cut(s) 438
DrdI GACNNNNNNGTC 1 cut(s) 114
DseDI GACNNNNNNGTC 1 cut(s) 114
Eam1104I CTCTTC 4 cut(s) 217, 523, 586, 594
EarI CTCTTC 4 cut(s) 217, 523, 586, 594
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 540, 700
EcoRII CCWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 5 cut(s) 41, 205, 223, 608, 680
FaqI GGGAC 4 cut(s) 41, 109, 557, 683
FatI CATG 5 cut(s) 37, 201, 219, 604, 676
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 2 cut(s) 202, 438
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 2 cut(s) 314, 721
GluI GCNGC 1 cut(s) 639
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 664, 701
Hin1II CATG 5 cut(s) 41, 205, 223, 608, 680
HinfI GANTC 4 cut(s) 14, 56, 259, 442
HpaII CCGG 2 cut(s) 664, 701
HphI GGTGA 2 cut(s) 17, 491
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 5 cut(s) 38, 202, 542, 585, 708
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 205, 588
HpyCH4III ACNGT 3 cut(s) 100, 299, 479
HpyCH4IV ACGT 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 171, 381, 669
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 5 cut(s) 41, 205, 223, 608, 680
KpnI GGTACC 1 cut(s) 566
Kzo9I GATC 2 cut(s) 274, 704
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 625
MaeI CTAG 2 cut(s) 314, 721
MaeII ACGT 1 cut(s) 405
MalI GATC 2 cut(s) 276, 706
MboI GATC 2 cut(s) 274, 704
MboII GAAGA 5 cut(s) 204, 434, 510, 573, 611
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 85
MseI TTAA 2 cut(s) 66, 437
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 664, 701
MspR9I CCNGG 4 cut(s) 665, 689, 701, 702
MvaI CCWGG 1 cut(s) 689
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 3 cut(s) 665, 701, 702
NdeII GATC 2 cut(s) 274, 704
NlaIII CATG 5 cut(s) 41, 205, 223, 608, 680
NlaIV GGNNCC 4 cut(s) 29, 141, 564, 656
NmeAIII GCCGAG 1 cut(s) 529
NspI RCATGY 1 cut(s) 608
PagI TCATGA 2 cut(s) 37, 201
PciSI GCTCTTC 1 cut(s) 594
PfeI GAWTC 4 cut(s) 14, 56, 259, 442
PkrI GCNGC 1 cut(s) 640
Psp6I CCWGG 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 4 cut(s) 29, 141, 564, 656
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 28, 139, 140
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 476, 564
RsaNI GTAC 2 cut(s) 475, 563
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 66, 437
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 2 cut(s) 274, 704
Sau96I GGNCC 3 cut(s) 28, 139, 140
ScrFI CCNGG 4 cut(s) 665, 689, 701, 702
SduI GDGCHC 1 cut(s) 143
SinI GGWCC 1 cut(s) 28
SmaI CCCGGG 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 340
SspMI CTAG 2 cut(s) 314, 721
StyD4I CCNGG 4 cut(s) 663, 687, 699, 700
TaaI ACNGT 3 cut(s) 100, 299, 479
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 257, 586
TasI AATT 1 cut(s) 340
TfiI GAWTC 4 cut(s) 14, 56, 259, 442
Tru1I TTAA 2 cut(s) 66, 437
Tru9I TTAA 2 cut(s) 66, 437
TseI GCWGC 1 cut(s) 638
TspDTI ATGAA 2 cut(s) 187, 204
TspMI CCCGGG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 28
XceI RCATGY 1 cut(s) 608
XmaI CCCGGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 2 cut(s) 314, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.