Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008151

Physical Location & Seq

Genomic Coordinates Reverse (-)

13638849 .. 13641715

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACTGGTTTAGCTGCAATAGTGGAGCATCTATGGGATATTGTCCTCCAATTATTTGACTGGAAACATACCAGAGACATTCGCTGGGCTAAGAAATCTAATAGACTTGCTCACATCAAGGAGCTTGAGGAAGAAGTGAAGCCTTTAAAGAATCTGTCTCACATCAAGGAGCTTGAGGAAGAAGTGAAGCCTTTAAAGAATCTGTCTCATCCATACATTGTTGACAAATGGGAAACTTTGGTTCCCACAGCACAAATCTCTTCTCGGCAAAGAAGGGAAGAGCCTGTTCCCCAAGTGCTTTTGGATAGAGTATTATTGGCTACCCATTCTTACTGGTGCCAACACCAGGCTAAGCAAGATGGCAAGCACCAGGCTTGTGTCCCAAGGATCACAGAGAGTGCCTCGACTTGTAGACATCGAGCTGCAAGGAGTCGAGCTGCAAGGTACTCGTCATTGTATGATGTAGAAAATAGCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.69

Weight (kDa)

9.17

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31640
malus_domestica	MD01G1101600.v1.1 MD09G1210200.v1.1 MD14G1095100.v1.1
pyrus_communis	pycom09g12750 pycom11g24660 pycom15g23000
rosa_chinensis	RchiOBHm_Chr1g0340011 RchiOBHm_Chr1g0357081 RchiOBHm_Chr3g0486941 RchiOBHm_Chr4g0436351
rosa_multiflora	Rmu_sc0006243.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220430 Rroxscaffold_7G00210400
rosa_samantha	Rh1CG218500 Rh1CG254900 Rh2DG070500 Rh5AG243700 Rh5AG243800 Rh6BG302100 Rh7AG161900 Rh7AG282400 Rh7CG016100 Rh7CG301700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	412
AclWI	GGATC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	345, 369
AluBI	AGCT	5 cut(s)	14, 124, 172, 422, 437
AluI	AGCT	5 cut(s)	14, 124, 172, 422, 437
Alw26I	GTCTC	3 cut(s)	69, 162, 210
AlwI	GGATC	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	14, 422, 437
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	409, 424
BccI	CCATC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	2 cut(s)	347, 371
BcoDI	GTCTC	3 cut(s)	69, 162, 210
BisI	GCNGC	3 cut(s)	15, 423, 438
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	16, 424, 439
Bme1390I	CCNGG	2 cut(s)	347, 371
BmiI	GGNNCC	2 cut(s)	243, 338
BmrFI	CCNGG	2 cut(s)	347, 371
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	146, 194
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	3 cut(s)	10, 65, 338
BseBI	CCWGG	2 cut(s)	347, 371
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseNI	ACTGG	3 cut(s)	10, 65, 338
BseXI	GCAGC	2 cut(s)	409, 424
BseYI	CCCAGC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	3 cut(s)	69, 162, 210
BsmFI	GGGAC	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	387
Bsp1720I	GCTNAGC	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	243, 338
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	10, 65, 338
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	347, 371
Bst6I	CTCTTC	2 cut(s)	265, 273
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	90, 351
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	3 cut(s)	69, 162, 210
BstMBI	GATC	1 cut(s)	387
BstNI	CCWGG	2 cut(s)	347, 371
BstSCI	CCNGG	2 cut(s)	345, 369
BstV1I	GCAGC	2 cut(s)	409, 424
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	445
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	90, 351
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DraI	TTTAAA	2 cut(s)	147, 195
Eam1104I	CTCTTC	2 cut(s)	265, 273
EarI	CTCTTC	2 cut(s)	265, 273
Eco130I	CCWWGG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	345, 369
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaiI	YATR	4 cut(s)	34, 69, 214, 459
FaqI	GGGAC	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	15, 423, 438
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	15, 423, 438
GluI	GCNGC	3 cut(s)	15, 423, 438
GsaI	CCCAGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	151, 199, 430
Hpy166II	GTNNAC	2 cut(s)	223, 413
Hpy8I	GTNNAC	2 cut(s)	223, 413
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	17, 425, 440
HpyF3I	CTNAG	2 cut(s)	90, 351
Kzo9I	GATC	1 cut(s)	387
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	3 cut(s)	25, 121, 169
LpnPI	CCDG	9 cut(s)	46, 70, 85, 297, 319, 332, 356, 359, 383
Lsp1109I	GCAGC	2 cut(s)	409, 424
LweI	GCATC	1 cut(s)	37
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	4 cut(s)	143, 191, 252, 290
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	56, 121, 169, 412
MseI	TTAA	2 cut(s)	146, 194
MspR9I	CCNGG	2 cut(s)	347, 371
MvaI	CCWGG	2 cut(s)	347, 371
NdeII	GATC	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	243, 338
NmeAIII	GCCGAG	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	151, 199
PkrI	GCNGC	3 cut(s)	16, 424, 439
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	345, 369
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	345, 369
PspN4I	GGNNCC	2 cut(s)	243, 338
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	146, 194
SatI	GCNGC	3 cut(s)	15, 423, 438
Sau3AI	GATC	1 cut(s)	387
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	347, 371
SetI	ASST	6 cut(s)	16, 126, 174, 424, 439, 446
SfaNI	GCATC	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	125, 173
SmoI	CTYRAG	2 cut(s)	125, 173
Sse9I	AATT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	345, 369
StyI	CCWWGG	1 cut(s)	383
TaqI	TCGA	3 cut(s)	404, 418, 433
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	151, 199
Tru1I	TTAA	2 cut(s)	146, 194
Tru9I	TTAA	2 cut(s)	146, 194
TseI	GCWGC	3 cut(s)	14, 422, 437
XmiI	GTMKAC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.