Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008151

Physical Location & Seq

Genomic Coordinates Reverse (-)

51943327 .. 51947683

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTCAGTAACATGAGGATAGGTAAATGTCAATCTGCTCTTTGGGACCAATCTCATGATACAGATGAATGTGAATCTGCTCTTGAAGCCCGGTATCAAATAGGGTCATGTGTCAAGTGCCACAGCCACCTTCATCATGACATTCTCTTCATCCATGTCAGTGGTAGAATACTACCTCCTGAAATGATTTCCGATTCCCTATGGATATTGTCCTCCAATTATTTGACTGGAAACATACCAGAGACATTCGCTGGGCTAAGAAATCTAATAGACTTGACAAATGGGAAACTTTGGTTCCCACAGCACAAATCTCTTCTCGGCAAAGAAGGGAAGACCCTGTTCCCCAAGTGCTTTTGGATAGAGTATTGGCTGCCCATTCTTACTAGTGCCAACACCAGGCTAAGCAAGATGGCAAGCACTAGGCTTGTGTCCCAAGGATCACAGAGAGTACCTCGACTTGTAGACATCGAGCTGCAAGGTACTCGTCATTGTATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

8.25

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31640
malus_domestica	MD01G1101600.v1.1 MD09G1210200.v1.1 MD14G1095100.v1.1
pyrus_communis	pycom09g12750 pycom11g24660 pycom15g23000
rosa_chinensis	RchiOBHm_Chr1g0340011 RchiOBHm_Chr1g0357081 RchiOBHm_Chr3g0486941 RchiOBHm_Chr4g0436351
rosa_multiflora	Rmu_sc0006243.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220430 Rroxscaffold_7G00210400
rosa_samantha	Rh1CG218500 Rh1CG254900 Rh2DG070500 Rh5AG243700 Rh5AG243800 Rh6BG302100 Rh7AG161900 Rh7AG282400 Rh7CG016100 Rh7CG301700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	445
AfaI	GTAC	2 cut(s)	450, 481
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	86
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	370, 472
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	357, 459
BccI	CCATC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	2 cut(s)	384, 420
BisI	GCNGC	2 cut(s)	371, 473
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	2 cut(s)	372, 474
Bme1390I	CCNGG	2 cut(s)	91, 397
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	47, 296
BmrFI	CCNGG	2 cut(s)	91, 397
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu1102I	GCTNAGC	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	357, 459
BseYI	CCCAGC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	59, 415
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	59, 415
Bsp143I	GATC	1 cut(s)	437
Bsp1720I	GCTNAGC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	2 cut(s)	55, 136
BspLI	GGNNCC	2 cut(s)	47, 296
BspPI	GGATC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	397
Bst6I	CTCTTC	2 cut(s)	152, 318
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	5, 257, 401
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	440
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	437
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	89, 395
BstV1I	GCAGC	2 cut(s)	357, 459
BstV2I	GAAGAC	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	2 cut(s)	55, 136
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	449, 480
CviAII	CATG	5 cut(s)	13, 56, 108, 137, 155
CviJI	RGCY	7 cut(s)	89, 126, 256, 370, 400, 424, 472
CviKI_1	RGCY	7 cut(s)	89, 126, 256, 370, 400, 424, 472
CviQI	GTAC	2 cut(s)	449, 480
DdeI	CTNAG	3 cut(s)	5, 257, 401
DpnI	GATC	1 cut(s)	439
DpnII	GATC	1 cut(s)	437
Eam1104I	CTCTTC	2 cut(s)	152, 318
EarI	CTCTTC	2 cut(s)	152, 318
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	16, 59, 111, 140, 158
FaiI	YATR	8 cut(s)	14, 57, 109, 138, 156, 202, 236, 494
FaqI	GGGAC	2 cut(s)	59, 415
FatI	CATG	5 cut(s)	12, 55, 107, 136, 154
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	371, 473
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	371, 473
FspBI	CTAG	2 cut(s)	384, 420
GluI	GCNGC	2 cut(s)	371, 473
GsaI	CCCAGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	5 cut(s)	16, 59, 111, 140, 158
HinfI	GANTC	2 cut(s)	74, 194
HpaII	CCGG	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	56, 83, 137, 179
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	140, 320
HpyCH4V	TGCA	1 cut(s)	475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	5, 257, 401
Hsp92II	CATG	5 cut(s)	16, 59, 111, 140, 158
Kzo9I	GATC	1 cut(s)	437
LpnPI	CCDG	8 cut(s)	104, 192, 213, 237, 252, 350, 382, 409
Lsp1109I	GCAGC	2 cut(s)	357, 459
MaeI	CTAG	2 cut(s)	384, 420
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	439
MboI	GATC	1 cut(s)	437
MboII	GAAGA	3 cut(s)	139, 305, 343
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	4 cut(s)	9, 186, 223, 462
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	91, 397
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	437
NlaIII	CATG	5 cut(s)	16, 59, 111, 140, 158
NlaIV	GGNNCC	2 cut(s)	47, 296
NmeAIII	GCCGAG	1 cut(s)	297
PagI	TCATGA	2 cut(s)	55, 136
PfeI	GAWTC	2 cut(s)	74, 194
PkrI	GCNGC	2 cut(s)	372, 474
Psp6I	CCWGG	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	47, 296
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	450, 481
RsaNI	GTAC	2 cut(s)	449, 480
RseI	CAYNNNNRTG	1 cut(s)	159
SatI	GCNGC	2 cut(s)	371, 473
Sau3AI	GATC	1 cut(s)	437
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	91, 397
SetI	ASST	6 cut(s)	25, 132, 178, 454, 474, 481
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	384, 420
StyD4I	CCNGG	2 cut(s)	89, 395
StyI	CCWWGG	1 cut(s)	433
TaqI	TCGA	2 cut(s)	454, 468
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	74, 194
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	370, 472
TspDTI	ATGAA	3 cut(s)	81, 122, 139
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	384, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.