Rh5AG243800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008151
Physical Location & Seq
Reverse (-)
29735935 .. 29757426
21492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG243800.1

Sequence Viewer

Length: 303 bp
ATGATATCCGAATTGAGAGCGGTTAATTTCTCGATCGTTAAATTGTCGACGTTCAGTGTAATAATATGTGGAACTTCTTATGCTCAAGACTTAGCAGAGTTTTCTTTGGGTGAGCTTCAGCAGTACAAGTTTGAGCTGTGTTTGGTCAAGTGGAAACAAGGTGATCGAGTAGCATACGGAGCAAAATTCAGAACCCATGATAGAACACGTGAATGTCAATCTGCTCTTTGGGACCAATCTCATGATACAGATGAATGTGAATCTGCTCTTGAAGCCCGGTATCAAATAGGGTCATGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

5.63

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 47
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 101
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 2 cut(s) 115, 136
AluI AGCT 2 cut(s) 115, 136
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 122, 173
AvaII GGWCC 1 cut(s) 232
BbrPI CACGTG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 277
BsaAI YACGTR 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 33, 163
BspACI CCGC 1 cut(s) 20
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 20
BssMI GATC 2 cut(s) 33, 163
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 91
BstKTI GATC 2 cut(s) 36, 166
BstMBI GATC 2 cut(s) 33, 163
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 179, 272
BstSCI CCNGG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 197, 242, 294
CviJI RGCY 3 cut(s) 115, 136, 275
CviKI_1 RGCY 3 cut(s) 115, 136, 275
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 35, 165
DpnII GATC 2 cut(s) 33, 163
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 6
FaeI CATG 3 cut(s) 200, 245, 297
FaiI YATR 6 cut(s) 67, 81, 175, 198, 243, 295
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 196, 241, 293
FblI GTMKAC 1 cut(s) 47
HapII CCGG 1 cut(s) 277
Hin1II CATG 3 cut(s) 200, 245, 297
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 122, 173
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 10, 191
Hpy188III TCNNGA 4 cut(s) 31, 86, 242, 269
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 50, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 272
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 2 cut(s) 50, 208
Hsp92II CATG 3 cut(s) 200, 245, 297
Kzo9I GATC 2 cut(s) 33, 163
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 1 cut(s) 290
MaeII ACGT 2 cut(s) 50, 208
MalI GATC 2 cut(s) 35, 165
MbiI CCGCTC 1 cut(s) 20
MboI GATC 2 cut(s) 33, 163
MluCI AATT 4 cut(s) 11, 25, 41, 185
MseI TTAA 2 cut(s) 24, 39
MslI CAYNNNNRTG 1 cut(s) 211
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 179, 272
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 33, 163
NlaIII CATG 3 cut(s) 200, 245, 297
NlaIV GGNNCC 1 cut(s) 233
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 1 cut(s) 260
Ple19I CGATCG 1 cut(s) 36
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 209
PspCI CACGTG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 232
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 211
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 24, 39
Sau3AI GATC 2 cut(s) 33, 163
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 277
SetI ASST 5 cut(s) 53, 117, 138, 163, 211
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 4 cut(s) 11, 25, 41, 185
SsiI CCGC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 2 cut(s) 53, 211
TaqI TCGA 3 cut(s) 32, 47, 166
TasI AATT 4 cut(s) 11, 25, 41, 185
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 24, 39
Tru9I TTAA 2 cut(s) 24, 39
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.