pycom15g23000

Membrane protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008151
Physical Location & Seq
Reverse (-)
17080986 .. 17082021
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23000.4

Sequence Viewer

Length: 582 bp
ATGATCCAGCTCAACATTATAGTTTTATCATTGCATACACAGGTACCAATTGCAATTTCCGTAACACTCTTCGAAGCCATATGCTTATGCAAAGGCACCAGAGTGATTGCATCAAAAGGAAAGGAAATCACAAACTGGAAGTTGCATCAGATTTTTCTCTACTGCAGCTGTGGAATTGTAGCTGGTATGGTCGGTGGACTACTTGGGCTGGGAGGTGGTTTCATCTTGGGACCCCTTTTTCTTGAATTGGGTATTCCTCCTCAGGTAGCAAGTGCTACATCCACCTTTGCAATGCTATTCTCATCCTCCATGTCAGTTGTACAGTATTACCTTCTCAACCGTTTCCCGGTCCCCTATGCTGCTTATTTTGTGTTAGTTGCAACAATTGCTGCATTTACTGGTCAGCATGTAGTGAGAAAGATAATTGCAGTCCTTGGGAGAGCATCCATTGTCATCTTCATTCTAGCCTTGACAATCTTTGTCAGCGCAATCAGCTTAGGTGGGGTGGGCATAGCAAACATGGTTGAAAAGATGGAGAATCAAGAGTACATGGGATTTGAAAATTTCTGTAACCCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

194

Amino Acids

20.73

Weight (kDa)

8.64

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 2 cut(s) 43, 95
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 3 cut(s) 45, 321, 548
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 245, 527, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 4 cut(s) 10, 168, 182, 495
AluI AGCT 4 cut(s) 10, 168, 182, 495
ApeKI GCWGC 3 cut(s) 165, 359, 389
ApoI RAATTY 1 cut(s) 562
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 230, 349
AsuC2I CCSGG 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 230, 349
AxyI CCTNAGG 1 cut(s) 261
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BanI GGYRCC 2 cut(s) 43, 95
BbvI GCAGC 3 cut(s) 177, 346, 376
BccI CCATC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 347
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 3 cut(s) 166, 360, 390
BlsI GCNGC 3 cut(s) 167, 361, 391
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 230, 349
BmgT120I GGNCC 2 cut(s) 230, 349
BmiI GGNNCC 5 cut(s) 45, 97, 231, 232, 351
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 119, 154, 452
Bpu10I CCTNAGC 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 140, 403
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 29, 297
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 3 cut(s) 278, 302, 443
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 2 cut(s) 29, 297
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 140, 403
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 177, 346, 376
BseYI CCCAGC 1 cut(s) 208
BshNI GGYRCC 2 cut(s) 43, 95
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 2 cut(s) 243, 335
BslI CCNNNNNNNGG 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 243, 335
Bsp119I TTCGAA 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 5 cut(s) 45, 97, 231, 232, 351
BspMAI CTGCAG 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 43, 95
BsrDI GCAATG 2 cut(s) 29, 297
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 140, 403
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 324, 341
Bst6I CTCTTC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 261, 496
BstF5I GGATG 3 cut(s) 278, 302, 443
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 386, 492
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 3 cut(s) 177, 346, 376
Bsu36I CCTNAGG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 278, 302, 443
CfoI GCGC 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 230, 349
Csp6I GTAC 3 cut(s) 44, 320, 547
CviAII CATG 4 cut(s) 310, 407, 520, 550
CviJI RGCY 7 cut(s) 10, 77, 168, 182, 208, 467, 495
CviKI_1 RGCY 7 cut(s) 10, 77, 168, 182, 208, 467, 495
CviQI GTAC 3 cut(s) 44, 320, 547
DdeI CTNAG 2 cut(s) 261, 496
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 230, 349
Eco81I CCTNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 4 cut(s) 313, 410, 523, 553
FaqI GGGAC 2 cut(s) 243, 335
FatI CATG 4 cut(s) 309, 406, 519, 549
FauNDI CATATG 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 166, 360, 390
FokI GGATG 3 cut(s) 265, 289, 430
Fsp4HI GCNGC 3 cut(s) 166, 360, 390
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 487
GluI GCNGC 3 cut(s) 166, 360, 390
GsaI CCCAGC 1 cut(s) 212
HapII CCGG 1 cut(s) 347
HhaI GCGC 1 cut(s) 488
Hin1II CATG 4 cut(s) 313, 410, 523, 553
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 242, 542
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 324, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 492
HpyF3I CTNAG 2 cut(s) 261, 496
Hsp92II CATG 4 cut(s) 313, 410, 523, 553
HspAI GCGC 1 cut(s) 486
KflI GGGWCCC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 20, 26, 112, 121, 168, 194, 248, 360, 384
Lsp1109I GCAGC 3 cut(s) 177, 346, 376
LweI GCATC 3 cut(s) 119, 154, 452
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 61, 569
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 61, 448
MfeI CAATTG 2 cut(s) 48, 384
MluCI AATT 7 cut(s) 48, 54, 174, 245, 384, 423, 562
MnlI CCTC 4 cut(s) 206, 267, 270, 316
MseI TTAA 1 cut(s) 580
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 2 cut(s) 48, 384
MwoI GCNNNNNNNGC 2 cut(s) 386, 492
NciI CCSGG 1 cut(s) 347
NdeI CATATG 1 cut(s) 80
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 313, 410, 523, 553
NlaIV GGNNCC 5 cut(s) 45, 97, 231, 232, 351
NspI RCATGY 1 cut(s) 410
NspV TTCGAA 1 cut(s) 72
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 3 cut(s) 167, 361, 391
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 5 cut(s) 45, 97, 231, 232, 351
PspPI GGNCC 2 cut(s) 230, 349
PspPPI RGGWCCY 1 cut(s) 230
PstI CTGCAG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 3 cut(s) 45, 321, 548
RsaNI GTAC 3 cut(s) 44, 320, 547
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 580
SatI GCNGC 3 cut(s) 166, 360, 390
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 230, 349
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 3 cut(s) 119, 154, 452
SfcI CTRYAG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 2 cut(s) 230, 349
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 7 cut(s) 48, 54, 174, 245, 384, 423, 562
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 324, 341
TaqI TCGA 1 cut(s) 72
TasI AATT 7 cut(s) 48, 54, 174, 245, 384, 423, 562
TatI WGTACW 2 cut(s) 319, 546
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TseI GCWGC 3 cut(s) 165, 359, 389
TspDTI ATGAA 2 cut(s) 211, 448
TspGWI ACGGA 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 230, 349
XapI RAATTY 1 cut(s) 562
XceI RCATGY 1 cut(s) 410
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.