RchiOBHm_Chr3g0486941

Telomere repeat-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
34014947 .. 34020800
5854 bp
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UTR
Exon/CDS
Intron
PRQ45138

Sequence Viewer

Length: 174 bp
ATGGTTAACTTAATTTGGTTCACACAGCACAAATCTCTTCTTAGCAAAGAAGGGGAGAGCATGTTCTCCAATTGCTCTTGGACAAGAGTATTGGCTGCCCATTCTTACTGGTGCCAACACCAGGCTAAGCAACATGGCAAGCACCAGGCTTGTCCCAAGGATCACAGACAGTAG

Protein Analysis

57

Amino Acids

6.74

Weight (kDa)

9.3

Isoelectric Point (pI)

22.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AclWI GGATC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 121
AjnI CCWGG 2 cut(s) 120, 144
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AlwI GGATC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 122, 146
BisI GCNGC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 122, 146
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 122, 146
Bpu1102I GCTNAGC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 122, 146
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 160
Bsp1720I GCTNAGC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 122, 146
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 41, 126
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 122, 146
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 120, 144
BstV1I GCAGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 140
CviAII CATG 2 cut(s) 61, 134
CviJI RGCY 3 cut(s) 95, 125, 149
CviKI_1 RGCY 3 cut(s) 95, 125, 149
DdeI CTNAG 2 cut(s) 41, 126
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 120, 144
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 64, 137
FaiI YATR 2 cut(s) 62, 135
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 60, 133
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 64, 137
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HpaI GTTAAC 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 7, 21
Hpy8I GTNNAC 2 cut(s) 7, 21
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 41, 126
Hsp92II CATG 2 cut(s) 64, 137
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 94, 107, 131, 134, 158
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 70
MluCI AATT 2 cut(s) 12, 70
MseI TTAA 2 cut(s) 6, 11
MspR9I CCNGG 2 cut(s) 122, 146
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 2 cut(s) 122, 146
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 64, 137
NlaIV GGNNCC 1 cut(s) 113
NspI RCATGY 1 cut(s) 64
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 120, 144
PspGI CCWGG 2 cut(s) 120, 144
PspN4I GGNNCC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 6, 11
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 122, 146
Sse9I AATT 2 cut(s) 12, 70
StyD4I CCNGG 2 cut(s) 120, 144
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 171
TasI AATT 2 cut(s) 12, 70
Tru1I TTAA 2 cut(s) 6, 11
Tru9I TTAA 2 cut(s) 6, 11
TseI GCWGC 1 cut(s) 95
XceI RCATGY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.