Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

24815481 .. 24817878

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGTCCATAGGTGTCCTCCTACCAATCCCAATGTCCCCTTACTTGGAACAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTTTGGACCGCTCCCCACAAGACCCAGTTCATCAAGGACCACGCCGCCTCCATCCGCGCCATCGTCGGCAACGCCTCCGCCGGCGCCGACGCCGAGTTGATCGACTCTCTGCCCAAGTTGGAGATCGTCGCCAGTTACAGCGTTGGGATTGACAAGGTCGACTTGAAGTACTGCAAGGAAAAGGGTGTGAGGGTCACTAACACCCCCGACGTGTTGACCGATGACGTGGCCGACATTGCTATTGGGTTGACTCTGGCGGTGATGCGCCGGCTTTGCGAGAGTGACCGGTATGTCAGGAGTGGGCTGTGGAAGAAGGGTGACTACAAGTTGACCACAAAGTTCACCGGAAAAACAGTCGGTATCATCGGTTTGGGAAGAATTGGCAAAGCTATTGCCAAGAGAGCTGAGGCTTTTAGCTGCCCCATTGCCTACTTTACAAGAACAGAAAAACCAGATTTAAAGTACAAGTATTATCCTACTGTTGTGGAATTGGCATCCCACTGTGATGTTCTAGTTGTTGCATGCCCACTTACTGAAGAAACCCACCATGTTATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCCTCATGTTGATGAACCTGAGTTGGTATCTGCACTGCTAGAAGGCCGATTAGGTGGAGCTGGCCTCGATGTGTATCAGAATGAACCGAATGTACCGGAGCAGCTGTTTGGACTTGAAAATGTGGTGCTCTTGCCTCATGTAGGAAGTGCCACTACAGAAACTCGCAATGCAATGGCTGACCTCGTTATTGGGAATCTTGAGGCTCATTTCTTGAACAAACCATTGTTGACACCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

314

Amino Acids

34.19

Weight (kDa)

6.09

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	13 - 312	1.2e-25	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	109 - 281	2.9e-53	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	141
AciI	CCGC	5 cut(s)	93, 129, 139, 162, 341
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	168, 174
AfaI	GTAC	3 cut(s)	254, 548, 792
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	46, 839
AflIII	ACRYGT	1 cut(s)	294
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	73, 82, 250, 815, 913
AjiI	CACGTC	2 cut(s)	295, 310
AluBI	AGCT	7 cut(s)	58, 85, 473, 488, 501, 758, 802
AluI	AGCT	7 cut(s)	58, 85, 473, 488, 501, 758, 802
Alw21I	GWGCWC	2 cut(s)	60, 828
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	4 cut(s)	312, 665, 742, 760
ApeKI	GCWGC	2 cut(s)	501, 799
AsiGI	ACCGGT	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	4 cut(s)	69, 143, 170, 351
AspS9I	GGNCC	4 cut(s)	90, 121, 665, 698
AsuHPI	GGTGA	3 cut(s)	355, 413, 418
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	3 cut(s)	90, 121, 698
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	4 cut(s)	389, 421, 835, 867
Bbv12I	GWGCWC	2 cut(s)	60, 828
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	488, 811
BccI	CCATC	2 cut(s)	143, 152
BfaI	CTAG	2 cut(s)	596, 737
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	2 cut(s)	70, 171
BisI	GCNGC	3 cut(s)	129, 502, 800
BlsI	GCNGC	3 cut(s)	130, 503, 801
BmcAI	AGTACT	1 cut(s)	254
Bme18I	GGWCC	3 cut(s)	90, 121, 698
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	2 cut(s)	295, 310
BmgT120I	GGNCC	4 cut(s)	90, 121, 665, 698
BmiI	GGNNCC	3 cut(s)	169, 666, 699
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	336, 587, 646
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	4 cut(s)	685, 717, 747, 779
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	2 cut(s)	168, 174
BsaWI	WCCGGW	3 cut(s)	369, 428, 793
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 788, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 839
Bse118I	RCCGGY	3 cut(s)	164, 351, 369
Bse1I	ACTGG	2 cut(s)	109, 216
Bse3DI	GCAATG	4 cut(s)	318, 507, 871, 876
Bse8I	GATNNNNATC	1 cut(s)	771
BseGI	GGATG	2 cut(s)	135, 578
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	46, 839
BseMI	GCAATG	4 cut(s)	318, 507, 871, 876
BseMII	CTCAG	2 cut(s)	480, 708
BseNI	ACTGG	2 cut(s)	109, 216
BseXI	GCAGC	2 cut(s)	488, 811
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	4 cut(s)	314, 667, 744, 762
BshNI	GGYRCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	60, 828
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	5 cut(s)	165, 352, 370, 429, 794
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	46, 839
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	4 cut(s)	314, 667, 744, 762
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	60, 828
Bsp143I	GATC	2 cut(s)	183, 207
BspACI	CCGC	5 cut(s)	93, 129, 139, 162, 341
BspANI	GGCC	4 cut(s)	314, 667, 744, 762
BspCNI	CTCAG	2 cut(s)	481, 709
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	169, 666, 699
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	4 cut(s)	318, 507, 871, 876
BsrFI	RCCGGY	3 cut(s)	164, 351, 369
BsrI	ACTGG	2 cut(s)	109, 216
BssAI	RCCGGY	3 cut(s)	164, 351, 369
BssMI	GATC	2 cut(s)	183, 207
BssNI	GRCGYC	2 cut(s)	168, 174
Bst4CI	ACNGT	3 cut(s)	439, 565, 587
BstACI	GRCGYC	2 cut(s)	168, 174
BstC8I	GCNNGC	4 cut(s)	166, 353, 607, 760
BstDEI	CTNAG	2 cut(s)	489, 717
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	2 cut(s)	135, 578
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	70, 171
BstHHI	GCGC	4 cut(s)	69, 143, 170, 351
BstKTI	GATC	2 cut(s)	186, 210
BstMBI	GATC	2 cut(s)	183, 207
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 320, 357, 485
BstNSI	RCATGY	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	488, 811
BsuRI	GGCC	4 cut(s)	314, 667, 744, 762
BtrI	CACGTC	2 cut(s)	295, 310
BtsCI	GGATG	2 cut(s)	135, 578
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	583, 731
Cac8I	GCNNGC	4 cut(s)	166, 353, 607, 760
CfoI	GCGC	4 cut(s)	69, 143, 170, 351
Cfr10I	RCCGGY	3 cut(s)	164, 351, 369
Cfr13I	GGNCC	4 cut(s)	90, 121, 665, 698
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	253, 547, 791
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	4 cut(s)	606, 632, 704, 836
CviQI	GTAC	3 cut(s)	253, 547, 791
DdeI	CTNAG	2 cut(s)	489, 717
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	185, 209
DpnII	GATC	2 cut(s)	183, 207
DraI	TTTAAA	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	90, 121, 698
Eco47III	AGCGCT	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	60
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	4 cut(s)	609, 635, 707, 839
FaiI	YATR	6 cut(s)	11, 375, 607, 633, 705, 837
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	605, 631, 703, 835
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	129, 502, 800
FokI	GGATG	2 cut(s)	122, 565
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	129, 502, 800
FspBI	CTAG	2 cut(s)	596, 737
GlaI	GCGC	4 cut(s)	68, 142, 169, 350
GluI	GCNGC	3 cut(s)	129, 502, 800
HaeII	RGCGCY	2 cut(s)	70, 171
HaeIII	GGCC	4 cut(s)	314, 667, 744, 762
HapII	CCGG	5 cut(s)	165, 352, 370, 429, 794
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	4 cut(s)	69, 143, 170, 351
Hin1I	GRCGYC	2 cut(s)	168, 174
Hin1II	CATG	4 cut(s)	609, 635, 707, 839
Hin6I	GCGC	4 cut(s)	67, 141, 168, 349
HinP1I	GCGC	4 cut(s)	67, 141, 168, 349
HincII	GTYRAC	5 cut(s)	244, 300, 333, 414, 927
HindII	GTYRAC	5 cut(s)	244, 300, 333, 414, 927
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	4 cut(s)	5, 188, 334, 892
HpaII	CCGG	5 cut(s)	165, 352, 370, 429, 794
HphI	GGTGA	3 cut(s)	355, 413, 418
Hpy166II	GTNNAC	6 cut(s)	244, 300, 333, 414, 426, 927
Hpy188I	TCNGA	1 cut(s)	777
Hpy188III	TCNNGA	6 cut(s)	61, 79, 379, 644, 896, 910
Hpy8I	GTNNAC	6 cut(s)	244, 300, 333, 414, 426, 927
Hpy99I	CGWCG	4 cut(s)	152, 176, 215, 296
HpyAV	CCTTC	2 cut(s)	391, 734
HpyCH4III	ACNGT	3 cut(s)	439, 565, 587
HpyCH4IV	ACGT	2 cut(s)	294, 309
HpyCH4V	TGCA	4 cut(s)	258, 605, 731, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 320, 357, 485
HpyF3I	CTNAG	2 cut(s)	489, 717
HpySE526I	ACGT	2 cut(s)	294, 309
Hsp92I	GRCGYC	2 cut(s)	168, 174
Hsp92II	CATG	4 cut(s)	609, 635, 707, 839
HspAI	GCGC	4 cut(s)	67, 141, 168, 349
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	2 cut(s)	164, 351
KroNI	GCCGGC	2 cut(s)	166, 353
Kzo9I	GATC	2 cut(s)	183, 207
LmnI	GCTCC	3 cut(s)	100, 755, 796
Lsp1109I	GCAGC	2 cut(s)	488, 811
LweI	GCATC	3 cut(s)	336, 587, 646
MaeI	CTAG	2 cut(s)	596, 737
MaeII	ACGT	2 cut(s)	294, 309
MaeIII	GTNAC	4 cut(s)	218, 277, 365, 401
MalI	GATC	2 cut(s)	185, 209
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	2 cut(s)	183, 207
MboII	GAAGA	3 cut(s)	406, 471, 632
MhlI	GDGCHC	2 cut(s)	60, 828
MluCI	AATT	2 cut(s)	462, 572
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	14, 182, 328
MmeI	TCCRAC	1 cut(s)	183
MreI	CGCCGGCG	1 cut(s)	164
MroNI	GCCGGC	2 cut(s)	164, 351
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	3 cut(s)	542, 684, 940
MslI	CAYNNNNRTG	2 cut(s)	588, 708
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	5 cut(s)	165, 352, 370, 429, 794
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	64, 320, 357, 485
NaeI	GCCGGC	2 cut(s)	166, 353
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	2 cut(s)	183, 207
NgoMIV	GCCGGC	2 cut(s)	164, 351
NlaIII	CATG	4 cut(s)	609, 635, 707, 839
NlaIV	GGNNCC	3 cut(s)	169, 666, 699
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	277, 365, 401
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	2 cut(s)	166, 353
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	892
PflFI	GACNNNGTC	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	130, 503, 801
PleI	GAGTC	3 cut(s)	13, 182, 328
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	13, 182, 328
PpuMI	RGGWCCY	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	169, 666, 699
PspPI	GGNCC	4 cut(s)	90, 121, 665, 698
PspPPI	RGGWCCY	1 cut(s)	698
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	3 cut(s)	254, 548, 792
RsaNI	GTAC	3 cut(s)	253, 547, 791
RseI	CAYNNNNRTG	2 cut(s)	588, 708
SacI	GAGCTC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	542, 684, 940
SatI	GCNGC	3 cut(s)	129, 502, 800
Sau3AI	GATC	2 cut(s)	183, 207
Sau96I	GGNCC	4 cut(s)	90, 121, 665, 698
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	3 cut(s)	14, 182, 328
SduI	GDGCHC	2 cut(s)	60, 828
SfaNI	GCATC	3 cut(s)	336, 587, 646
SfcI	CTRYAG	1 cut(s)	852
SfoI	GGCGCC	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	3 cut(s)	90, 121, 698
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	588, 708
SmlI	CTYRAG	2 cut(s)	59, 896
SmoI	CTYRAG	2 cut(s)	59, 896
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	2 cut(s)	462, 572
SsiI	CCGC	5 cut(s)	93, 129, 139, 162, 341
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	596, 737
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	439, 565, 587
TaiI	ACGT	2 cut(s)	297, 312
TaqI	TCGA	4 cut(s)	60, 186, 243, 765
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	462, 572
TatI	WGTACW	2 cut(s)	252, 546
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	892
Tru1I	TTAA	3 cut(s)	542, 684, 940
Tru9I	TTAA	3 cut(s)	542, 684, 940
TscAI	CASTG	2 cut(s)	590, 738
TseFI	GTSAC	3 cut(s)	277, 365, 401
TseI	GCWGC	2 cut(s)	501, 799
Tsp45I	GTSAC	3 cut(s)	277, 365, 401
TspDTI	ATGAA	3 cut(s)	103, 726, 795
TspRI	CASTG	2 cut(s)	590, 738
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	90, 121, 698
XagI	CCTNNNNNAGG	1 cut(s)	837
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	596, 737
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.