Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

61291515 .. 61293613

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGTCCATAGGTGTTCTCATGCCAATCCCAATGTCCCCCTACTTAGAACAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTCTGGACCGTCCCCCACAAGGCCCAGTTCATCAAGGACCACGCCACCTCCATCCGCGCCATCGTCGGCAACGCCTCCGCCGGAGCCGACGCCGAGCTGATCGACTCTCTGCCCAAGTTGGAGATAGTCGCTAGCTTCAGCGTTGGAATCGACAAGGTCGATTTGAAGTATTGCAAGGAAAAGGGTGTGAGGGTCACCAACACCCCCGACGTTTTGACCGATGACGTGGCCGACATTGCTATTGGGTTGTCGCTGGCCGTGATGCGGCGGCTGTCCGAGAGTGACCGGTATGTCAGGGGTGGGCTGTGGAAGAAGGGTGACTACAAATTGACCACAAAGTTCACTGGAAAAATAGTTGGTATCCTTGGTTTGGGAAGAATCGGCAAAGCAGTTGCCAAGAGAGCTGAGGCTTTTAGCTGCCCCATTGCCTACTTTTCCAGAACAGAAAAACCAGAACTGAAGTACAAGTATTATCCTACTGTTGTGGAATTGGCCTCTAACTGTGATGTTCTAGTTGTTGCATGCCCACTTACTGAAGAAACCCGCCACATTATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCATCATGTTGATGAGCCTGAGTTGGTATCTGCACTGCTAGAAGGTCGATTAGGTGGAGCTGGCCTCGATGTGTATCAGAATGAACCAGAAGTACCAGAGCAGCTGTTTGGGATTGAAAATGTGGTGCTCCTGCCTCATGCAGGAAGTGACACTACAGAAACTTGCAATGCAATGGCTGATCTTGTTATTAGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGCTAACACCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

313

Amino Acids

34.28

Weight (kDa)

5.87

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	13 - 312	1.9e-24	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	110 - 281	1.3e-51	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccII	CGCG	1 cut(s)	141
AciI	CCGC	5 cut(s)	139, 162, 349, 352, 628
AcoI	YGGCCR	2 cut(s)	312, 339
AcuI	CTGAAG	3 cut(s)	205, 563, 639
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	548, 792
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	103, 348, 454, 839
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	73, 82, 250, 815, 913
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	8 cut(s)	58, 85, 181, 219, 488, 501, 758, 802
AluI	AGCT	8 cut(s)	58, 85, 181, 219, 488, 501, 758, 802
Alw21I	GWGCWC	2 cut(s)	60, 828
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	6 cut(s)	105, 312, 339, 576, 665, 760
ApeKI	GCWGC	2 cut(s)	501, 799
AsiGI	ACCGGT	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	69, 143
AspS9I	GGNCC	4 cut(s)	90, 106, 121, 665
AsuHPI	GGTGA	2 cut(s)	271, 413
AsuNHI	GCTAGC	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	90, 121
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	4 cut(s)	389, 421, 835, 867
Bbv12I	GWGCWC	2 cut(s)	60, 828
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	488, 811
BccI	CCATC	2 cut(s)	143, 152
BceAI	ACGGC	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	455
BfaI	CTAG	3 cut(s)	216, 596, 737
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	4 cut(s)	350, 353, 502, 800
BlsI	GCNGC	4 cut(s)	351, 354, 503, 801
Bme18I	GGWCC	2 cut(s)	90, 121
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	4 cut(s)	90, 106, 121, 665
BmiI	GGNNCC	2 cut(s)	169, 666
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	336, 646
BmtI	GCTAGC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	448
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 348, 454, 839
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	109, 433
Bse3DI	GCAATG	5 cut(s)	318, 507, 871, 876, 920
Bse8I	GATNNNNATC	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	4 cut(s)	103, 348, 454, 839
BseMI	GCAATG	5 cut(s)	318, 507, 871, 876, 920
BseMII	CTCAG	2 cut(s)	480, 708
BseNI	ACTGG	2 cut(s)	109, 433
BseXI	GCAGC	2 cut(s)	488, 811
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	6 cut(s)	107, 314, 341, 578, 667, 762
BshTI	ACCGGT	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	60, 828
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	165, 370
BslFI	GGGAC	2 cut(s)	22, 80
BslI	CCNNNNNNNGG	4 cut(s)	103, 348, 454, 839
BsmFI	GGGAC	2 cut(s)	22, 80
BsnI	GGCC	6 cut(s)	107, 314, 341, 578, 667, 762
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	60, 828
Bsp143I	GATC	2 cut(s)	183, 877
BspACI	CCGC	5 cut(s)	139, 162, 349, 352, 628
BspANI	GGCC	6 cut(s)	107, 314, 341, 578, 667, 762
BspCNI	CTCAG	2 cut(s)	481, 709
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	169, 666
BspOI	GCTAGC	1 cut(s)	219
BsrDI	GCAATG	5 cut(s)	318, 507, 871, 876, 920
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	109, 433
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	183, 877
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	94, 565, 587
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	217, 339, 607, 760
BstDEI	CTNAG	3 cut(s)	46, 489, 717
BstEII	GGTNACC	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 143
BstKTI	GATC	2 cut(s)	186, 880
BstMBI	GATC	2 cut(s)	183, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
BstNSI	RCATGY	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	488, 811
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	6 cut(s)	107, 314, 341, 578, 667, 762
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	426, 731
Cac8I	GCNNGC	4 cut(s)	217, 339, 607, 760
CfoI	GCGC	2 cut(s)	69, 143
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	4 cut(s)	90, 106, 121, 665
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	547, 791
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	4 cut(s)	22, 606, 704, 836
CviQI	GTAC	2 cut(s)	547, 791
DdeI	CTNAG	3 cut(s)	46, 489, 717
DpnI	GATC	2 cut(s)	185, 879
DpnII	GATC	2 cut(s)	183, 877
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	312, 339
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	90, 121
Eco47III	AGCGCT	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	205, 563, 639
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO65I	GGTNACC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	25, 609, 707, 839
FaiI	YATR	6 cut(s)	11, 23, 375, 607, 705, 837
FaqI	GGGAC	2 cut(s)	22, 80
FatI	CATG	4 cut(s)	21, 605, 703, 835
FauI	CCCGC	1 cut(s)	635
Fnu4HI	GCNGC	4 cut(s)	350, 353, 502, 800
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	4 cut(s)	350, 353, 502, 800
FspBI	CTAG	3 cut(s)	216, 596, 737
GlaI	GCGC	2 cut(s)	68, 142
GluI	GCNGC	4 cut(s)	350, 353, 502, 800
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	6 cut(s)	107, 314, 341, 578, 667, 762
HapII	CCGG	2 cut(s)	165, 370
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	69, 143
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	25, 609, 707, 839
Hin6I	GCGC	2 cut(s)	67, 141
HinP1I	GCGC	2 cut(s)	67, 141
HinfI	GANTC	5 cut(s)	5, 188, 231, 462, 892
HpaII	CCGG	2 cut(s)	165, 370
HphI	GGTGA	2 cut(s)	271, 413
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	2 cut(s)	361, 777
Hpy188III	TCNNGA	7 cut(s)	61, 79, 88, 522, 644, 896, 910
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	3 cut(s)	152, 176, 296
HpyAV	CCTTC	2 cut(s)	391, 734
HpyCH4III	ACNGT	3 cut(s)	94, 565, 587
HpyCH4IV	ACGT	2 cut(s)	294, 309
HpyCH4V	TGCA	6 cut(s)	258, 605, 731, 839, 864, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
HpyF3I	CTNAG	3 cut(s)	46, 489, 717
HpySE526I	ACGT	2 cut(s)	294, 309
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	25, 609, 707, 839
HspAI	GCGC	2 cut(s)	67, 141
Kzo9I	GATC	2 cut(s)	183, 877
LmnI	GCTCC	3 cut(s)	167, 755, 831
Lsp1109I	GCAGC	2 cut(s)	488, 811
LweI	GCATC	2 cut(s)	336, 646
MaeI	CTAG	3 cut(s)	216, 596, 737
MaeII	ACGT	2 cut(s)	294, 309
MaeIII	GTNAC	4 cut(s)	277, 365, 401, 845
MalI	GATC	2 cut(s)	185, 879
MboI	GATC	2 cut(s)	183, 877
MboII	GAAGA	3 cut(s)	406, 471, 632
MhlI	GDGCHC	2 cut(s)	60, 828
MluCI	AATT	2 cut(s)	410, 572
MlyI	GAGTC	2 cut(s)	14, 182
MmeI	TCCRAC	2 cut(s)	183, 208
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	684, 940
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	2 cut(s)	165, 370
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
NdeII	GATC	2 cut(s)	183, 877
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	4 cut(s)	25, 609, 707, 839
NlaIV	GGNNCC	2 cut(s)	169, 666
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	4 cut(s)	277, 365, 401, 845
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 300
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	231, 462, 892
PflFI	GACNNNGTC	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	351, 354, 503, 801
PleI	GAGTC	2 cut(s)	13, 182
PpsI	GAGTC	2 cut(s)	13, 182
Psp124BI	GAGCTC	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	169, 666
PspPI	GGNCC	4 cut(s)	90, 106, 121, 665
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	2 cut(s)	548, 792
RsaNI	GTAC	2 cut(s)	547, 791
RseI	CAYNNNNRTG	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	684, 940
SatI	GCNGC	4 cut(s)	350, 353, 502, 800
Sau3AI	GATC	2 cut(s)	183, 877
Sau96I	GGNCC	4 cut(s)	90, 106, 121, 665
SchI	GAGTC	2 cut(s)	14, 182
SduI	GDGCHC	2 cut(s)	60, 828
SfaNI	GCATC	2 cut(s)	336, 646
SfcI	CTRYAG	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	90, 121
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	2 cut(s)	59, 896
SmoI	CTYRAG	2 cut(s)	59, 896
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	2 cut(s)	410, 572
SsiI	CCGC	5 cut(s)	139, 162, 349, 352, 628
SspMI	CTAG	3 cut(s)	216, 596, 737
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	94, 565, 587
TaiI	ACGT	2 cut(s)	297, 312
TaqI	TCGA	6 cut(s)	60, 186, 234, 243, 745, 765
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	410, 572
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	352, 355
TfiI	GAWTC	3 cut(s)	231, 462, 892
Tru1I	TTAA	2 cut(s)	684, 940
Tru9I	TTAA	2 cut(s)	684, 940
TscAI	CASTG	2 cut(s)	433, 738
TseFI	GTSAC	4 cut(s)	277, 365, 401, 845
TseI	GCWGC	2 cut(s)	501, 799
Tsp45I	GTSAC	4 cut(s)	277, 365, 401, 845
TspDTI	ATGAA	2 cut(s)	103, 795
TspRI	CASTG	2 cut(s)	433, 738
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	90, 121
XagI	CCTNNNNNAGG	1 cut(s)	837
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	216, 596, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.