Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Forward (+)

4889883 .. 4892783

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G067800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTGGTCACTACAACACGCTTGGTTTTGGTTGTAAGCTAATCTCAATCTGCCTTCATCCAACGAGACGTCCACATTTCACTCCATTTCTTCCCTTCCACTGGTCCTCCTCTCTGAACACCACACAACAACAAACAGCCGTCCATCACTACCAGTCCACAAATCCCAACCTTTCCCACCGTTTTGGGTGCCACCAATCGAAACCCAGTACCGAAAATCCAACAATGGAGTCCATAGGCGTTCTCATGCCAGCCCCAATGTCCTCATACTTAGAGCAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTCTGGACCGTCCCTCAAAAACCCCAGTTCCTCAAGGACCATTCCAGCTCCATCCGAGCCGTCGTCGGTAATGCAGGGAACGGAGCGGACGCCGAGCTCATCGAGAAATTGCCGAAGCTGGAGATCGTAGCCAGTTTCAGCGTCGGGGTCGATAAGGTCGATTTGAACAAGTGCAGGGAAAAGGGTATTCGGGTCACCAACACGCCCGATGTTTTGACCGATGACGTGGCGGACCTTGCTATTGGGTTGACGTTGGCTGTGCTGAGAAGGCTCTGTGAGTGTGATCGGTATGTGAGGAGCGGGCAGTGGAAGAAGGGTGACTACAAGTTGACCACCAAGTTCACTGGAAAAACAGTTGGCATCATCGGTCTGGGAAGAATAGGCAAAGCAGTTGCAAAGAGAGCTGAGGGTTTTAGCTGCCCAATTGCTTACTACTCCAGAACTGCAAAACCAGAGTTGAAGTACAAATACTACCCAAGTGTTGTTGAGTTGGCCTCCAACTGTGATGTTCTAGTTGTTGCATGCCCATTAACTGAAGAGACCCGCCACATTGTCAACAGGGAAGTCATTGATGCTTTGGGTCCAAAGGGTGTTCTCATCAACATTGGGAGAGGCCCTCATGTTGATGAAGCTGAGTTGGTATCCGCTCTGGTAGAAGGCCGGTTAGGTGGGGCGGGGCTCGATGTTTATGAGAAGGAACCAGAAGTGCCCGAGCAGCTGTTTGGACTTGAGAATGTGGTGCTCTTGCCTCATGTGGGAAGCGGCACCGTAGAAACTCGCAATGTCATGGCTGACCTCGTGGTTGAGAATCTTGAGGCTCACTTCTTGAAGAAACCATTGTTGACACCAGTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

389

Amino Acids

42.73

Weight (kDa)

8.02

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	189, 1073
AccBSI	CCGCTC	3 cut(s)	395, 609, 956
AciI	CCGC	7 cut(s)	395, 539, 609, 853, 954, 983, 1071
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	2 cut(s)	70, 399
AfaI	GTAC	2 cut(s)	211, 773
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	102, 1064
AgsI	TTSAA	5 cut(s)	298, 307, 475, 769, 1138
AjiI	CACGTC	1 cut(s)	535
Alw21I	GWGCWC	3 cut(s)	285, 408, 1053
Alw26I	GTCTC	2 cut(s)	61, 842
Ama87I	CYCGRG	2 cut(s)	284, 1019
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	3 cut(s)	801, 922, 967
ApeKI	GCWGC	2 cut(s)	726, 1024
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	6 cut(s)	105, 315, 346, 541, 890, 923
AsuHPI	GGTGA	2 cut(s)	496, 638
AvaI	CYCGRG	2 cut(s)	284, 1019
AvaII	GGWCC	5 cut(s)	105, 315, 346, 541, 890
BaeGI	GKGCMC	1 cut(s)	1020
BanI	GGYRCC	2 cut(s)	189, 1073
BanII	GRGCYC	3 cut(s)	285, 408, 990
BarI	GAAGNNNNNNTAC	4 cut(s)	614, 646, 761, 793
BauI	CACGAG	1 cut(s)	1106
Bbv12I	GWGCWC	3 cut(s)	285, 408, 1053
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	713, 1036
BccI	CCATC	2 cut(s)	153, 368
BceAI	ACGGC	2 cut(s)	125, 353
BciVI	GTATCC	1 cut(s)	961
BcoDI	GTCTC	2 cut(s)	61, 842
BfaI	CTAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	3 cut(s)	727, 1025, 1072
BlsI	GCNGC	3 cut(s)	728, 1026, 1073
Bme18I	GGWCC	5 cut(s)	105, 315, 346, 541, 890
BmeT110I	CYCGRG	2 cut(s)	284, 1019
BmgBI	CACGTC	1 cut(s)	535
BmgT120I	GGNCC	6 cut(s)	105, 315, 346, 541, 890, 923
BmiI	GGNNCC	4 cut(s)	191, 891, 1008, 1075
BmrI	ACTGGG	2 cut(s)	201, 328
BmsI	GCATC	2 cut(s)	678, 871
BmuI	ACTGGG	2 cut(s)	201, 328
BplI	GAGNNNNNCTC	4 cut(s)	788, 820, 910, 942
BpmI	CTGGAG	2 cut(s)	449, 730
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	3 cut(s)	326, 1058, 1142
BsaHI	GRCGYC	2 cut(s)	70, 399
BsaI	GGTCTC	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 1064
Bse118I	RCCGGY	1 cut(s)	969
Bse1I	ACTGG	7 cut(s)	107, 154, 207, 334, 441, 658, 1157
Bse3DI	GCAATG	1 cut(s)	1096
BseGI	GGATG	2 cut(s)	58, 360
BseLI	CCNNNNNNNGG	2 cut(s)	102, 1064
BseMI	GCAATG	1 cut(s)	1096
BseMII	CTCAG	3 cut(s)	563, 705, 933
BseNI	ACTGG	7 cut(s)	107, 154, 207, 334, 441, 658, 1157
BseRI	GAGGAG	2 cut(s)	100, 619
BseSI	GKGCMC	1 cut(s)	1020
BseXI	GCAGC	2 cut(s)	713, 1036
BsgI	GTGCAG	1 cut(s)	502
BshFI	GGCC	3 cut(s)	803, 924, 969
BshNI	GGYRCC	2 cut(s)	189, 1073
BsiHKAI	GWGCWC	3 cut(s)	285, 408, 1053
BsiHKCI	CYCGRG	2 cut(s)	284, 1019
BsiSI	CCGG	1 cut(s)	970
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	102, 1064
BsmAI	GTCTC	2 cut(s)	61, 842
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	803, 924, 969
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	2 cut(s)	284, 1019
Bsp1286I	GDGCHC	5 cut(s)	285, 408, 990, 1020, 1053
Bsp143I	GATC	2 cut(s)	432, 592
BspACI	CCGC	7 cut(s)	395, 539, 609, 853, 954, 983, 1071
BspANI	GGCC	3 cut(s)	803, 924, 969
BspCNI	CTCAG	3 cut(s)	564, 706, 934
BspLI	GGNNCC	4 cut(s)	191, 891, 1008, 1075
BspT107I	GGYRCC	2 cut(s)	189, 1073
BspTNI	GGTCTC	1 cut(s)	842
BsrBI	CCGCTC	3 cut(s)	395, 609, 956
BsrDI	GCAATG	1 cut(s)	1096
BsrFI	RCCGGY	1 cut(s)	969
BsrI	ACTGG	7 cut(s)	107, 154, 207, 334, 441, 658, 1157
BssAI	RCCGGY	1 cut(s)	969
BssMI	GATC	2 cut(s)	432, 592
BssNI	GRCGYC	2 cut(s)	70, 399
BssSI	CACGAG	1 cut(s)	1106
Bst2BI	CACGAG	1 cut(s)	1106
Bst4CI	ACNGT	5 cut(s)	182, 319, 664, 812, 1078
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	2 cut(s)	70, 399
BstC8I	GCNNGC	3 cut(s)	252, 611, 832
BstDEI	CTNAG	4 cut(s)	271, 572, 714, 942
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	58, 360
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	435, 595
BstMAI	GTCTC	2 cut(s)	61, 842
BstMBI	GATC	2 cut(s)	432, 592
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 545, 577, 710, 1024
BstNSI	RCATGY	1 cut(s)	834
BstPI	GGTNACC	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	1020
BstV1I	GCAGC	2 cut(s)	713, 1036
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	3 cut(s)	803, 924, 969
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	58, 360
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	4 cut(s)	100, 620, 651, 1164
Cac8I	GCNNGC	3 cut(s)	252, 611, 832
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	969
Cfr13I	GGNCC	6 cut(s)	105, 315, 346, 541, 890, 923
CseI	GACGC	2 cut(s)	407, 439
Csp6I	GTAC	2 cut(s)	210, 772
CviAII	CATG	5 cut(s)	247, 831, 929, 1061, 1096
CviQI	GTAC	2 cut(s)	210, 772
DdeI	CTNAG	4 cut(s)	271, 572, 714, 942
DpnI	GATC	2 cut(s)	434, 594
DpnII	GATC	2 cut(s)	432, 592
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	554
Ecl136II	GAGCTC	2 cut(s)	283, 406
Eco24I	GRGCYC	3 cut(s)	285, 408, 990
Eco31I	GGTCTC	1 cut(s)	842
Eco47I	GGWCC	5 cut(s)	105, 315, 346, 541, 890
Eco47III	AGCGCT	1 cut(s)	293
Eco53kI	GAGCTC	2 cut(s)	283, 406
Eco57I	CTGAAG	1 cut(s)	864
Eco88I	CYCGRG	2 cut(s)	284, 1019
Eco91I	GGTNACC	1 cut(s)	502
EcoICRI	GAGCTC	2 cut(s)	283, 406
EcoO109I	RGGNCCY	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	502
EcoT38I	GRGCYC	3 cut(s)	285, 408, 990
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	250, 834, 932, 1064, 1099
FaiI	YATR	9 cut(s)	236, 248, 268, 600, 832, 930, 999, 1062, 1097
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	246, 830, 928, 1060, 1095
FauI	CCCGC	3 cut(s)	602, 860, 976
Fnu4HI	GCNGC	3 cut(s)	727, 1025, 1072
FokI	GGATG	2 cut(s)	45, 347
FriOI	GRGCYC	3 cut(s)	285, 408, 990
Fsp4HI	GCNGC	3 cut(s)	727, 1025, 1072
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	727, 1025, 1072
GsuI	CTGGAG	2 cut(s)	449, 730
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	803, 924, 969
HapII	CCGG	1 cut(s)	970
HgaI	GACGC	2 cut(s)	407, 439
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	2 cut(s)	70, 399
Hin1II	CATG	5 cut(s)	250, 834, 932, 1064, 1099
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	4 cut(s)	558, 639, 865, 1152
HindII	GTYRAC	4 cut(s)	558, 639, 865, 1152
HinfI	GANTC	2 cut(s)	230, 1117
HpaII	CCGG	1 cut(s)	970
HphI	GGTGA	2 cut(s)	496, 638
Hpy166II	GTNNAC	7 cut(s)	74, 159, 558, 639, 651, 865, 1152
Hpy188I	TCNGA	2 cut(s)	117, 365
Hpy188III	TCNNGA	7 cut(s)	286, 304, 313, 412, 747, 1121, 1135
Hpy8I	GTNNAC	7 cut(s)	74, 159, 558, 639, 651, 865, 1152
Hpy99I	CGWCG	3 cut(s)	374, 377, 455
HpyAV	CCTTC	6 cut(s)	65, 106, 570, 616, 959, 997
HpyCH4III	ACNGT	5 cut(s)	182, 319, 664, 812, 1078
HpyCH4IV	ACGT	3 cut(s)	70, 534, 560
HpyCH4V	TGCA	5 cut(s)	383, 483, 704, 755, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 545, 577, 710, 1024
HpyF3I	CTNAG	4 cut(s)	271, 572, 714, 942
HpySE526I	ACGT	3 cut(s)	70, 534, 560
Hsp92I	GRCGYC	2 cut(s)	70, 399
Hsp92II	CATG	5 cut(s)	250, 834, 932, 1064, 1099
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	432, 592
LmnI	GCTCC	3 cut(s)	362, 392, 606
Lsp1109I	GCAGC	2 cut(s)	713, 1036
LweI	GCATC	2 cut(s)	678, 871
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	3 cut(s)	70, 534, 560
MaeIII	GTNAC	3 cut(s)	8, 502, 626
MalI	GATC	2 cut(s)	434, 594
MbiI	CCGCTC	3 cut(s)	395, 609, 956
MboI	GATC	2 cut(s)	432, 592
MboII	GAAGA	5 cut(s)	83, 631, 696, 857, 1150
MfeI	CAATTG	1 cut(s)	732
MhlI	GDGCHC	5 cut(s)	285, 408, 990, 1020, 1053
MluCI	AATT	2 cut(s)	416, 732
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	86, 245, 831
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	1 cut(s)	839
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	1027
MspI	CCGG	1 cut(s)	970
MunI	CAATTG	1 cut(s)	732
MwoI	GCNNNNNNNGC	5 cut(s)	289, 545, 577, 710, 1024
NdeII	GATC	2 cut(s)	432, 592
NlaIII	CATG	5 cut(s)	250, 834, 932, 1064, 1099
NlaIV	GGNNCC	4 cut(s)	191, 891, 1008, 1075
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	3 cut(s)	8, 502, 626
NspI	RCATGY	1 cut(s)	834
PaeI	GCATGC	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	1117
PkrI	GCNGC	3 cut(s)	728, 1026, 1073
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	285, 408
PspEI	GGTNACC	1 cut(s)	502
PspN4I	GGNNCC	4 cut(s)	191, 891, 1008, 1075
PspPI	GGNCC	6 cut(s)	105, 315, 346, 541, 890, 923
PvuII	CAGCTG	1 cut(s)	1027
RsaI	GTAC	2 cut(s)	211, 773
RsaNI	GTAC	2 cut(s)	210, 772
RseI	CAYNNNNRTG	1 cut(s)	933
SacI	GAGCTC	2 cut(s)	285, 408
SaqAI	TTAA	1 cut(s)	839
SatI	GCNGC	3 cut(s)	727, 1025, 1072
Sau3AI	GATC	2 cut(s)	432, 592
Sau96I	GGNCC	6 cut(s)	105, 315, 346, 541, 890, 923
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	5 cut(s)	285, 408, 990, 1020, 1053
SfaNI	GCATC	2 cut(s)	678, 871
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	5 cut(s)	105, 315, 346, 541, 890
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	4 cut(s)	284, 341, 1037, 1121
SmoI	CTYRAG	4 cut(s)	284, 341, 1037, 1121
SphI	GCATGC	1 cut(s)	834
Sse9I	AATT	2 cut(s)	416, 732
SsiI	CCGC	7 cut(s)	395, 539, 609, 853, 954, 983, 1071
SspMI	CTAG	1 cut(s)	821
SstI	GAGCTC	2 cut(s)	285, 408
TaaI	ACNGT	5 cut(s)	182, 319, 664, 812, 1078
TaiI	ACGT	3 cut(s)	73, 537, 563
TaqI	TCGA	6 cut(s)	200, 285, 411, 459, 468, 990
TaqII	GACCGA	2 cut(s)	542, 665
TasI	AATT	2 cut(s)	416, 732
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	1074
TfiI	GAWTC	1 cut(s)	1117
Tru1I	TTAA	1 cut(s)	839
Tru9I	TTAA	1 cut(s)	839
TscAI	CASTG	4 cut(s)	107, 620, 658, 1164
TseFI	GTSAC	3 cut(s)	8, 502, 626
TseI	GCWGC	2 cut(s)	726, 1024
Tsp45I	GTSAC	3 cut(s)	8, 502, 626
TspDTI	ATGAA	2 cut(s)	47, 951
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	4 cut(s)	107, 620, 658, 1164
VpaK11BI	GGWCC	5 cut(s)	105, 315, 346, 541, 890
XceI	RCATGY	1 cut(s)	834
XhoI	CTCGAG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	821
ZraI	GACGTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.