Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Forward (+)

44362642 .. 44363085

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0352900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATATGATGCTCAGCCCCAAGAAACTCATCAAACTGACTAGGAAGATACCAGTCATCAGAAGGAAAAAGAACTCATACCCAAGAGCAGGAGTAAGTACTAGTTTCAAGATGGATAGCCCTAAGTCTACAGATAAAGGTACTTTTGTTATCTACACCCTTGACCAAAGGCGTTTTGTTCTTCCCTTATCCTTTCTATGCAACTACATTTTTCAAGAGCTTTTCAAGATTTCCGAAGAAGAGTTTGGAATACCGAGTGACGGACCTATTGTTGTTCCATGCGATTCACTTCTCATGAATTACATTGTCTCACTTGTCCAACTTGGAATAAGTTCAGATTTGGAGAAAGCTATACTCAACTCCATCATCAGAAGTAACTGCTCCATATCTACTTTTGATGGTCGAGAACAGACGAGCCAACAATTACTCCTCTTTGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

9.19

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	8 - 105	8.2e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	100, 142
AfiI	CCNNNNNNNGG	2 cut(s)	89, 260
AgsI	TTSAA	3 cut(s)	109, 215, 226
AhlI	ACTAGT	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	2 cut(s)	220, 350
AluI	AGCT	2 cut(s)	220, 350
Alw26I	GTCTC	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BccI	CCATC	3 cut(s)	106, 371, 392
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	2 cut(s)	42, 102
BfmI	CTRYAG	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 260
Bse1I	ACTGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	89, 260
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	89, 260
BsmAI	GTCTC	1 cut(s)	313
Bsp1720I	GCTNAGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	14, 123
BstMAI	GTCTC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	129
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	99, 141
CviAII	CATG	2 cut(s)	279, 295
CviJI	RGCY	5 cut(s)	18, 120, 220, 350, 417
CviKI_1	RGCY	5 cut(s)	18, 120, 220, 350, 417
CviQI	GTAC	2 cut(s)	99, 141
DdeI	CTNAG	2 cut(s)	14, 123
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	263
FaeI	CATG	2 cut(s)	282, 298
FaiI	YATR	7 cut(s)	8, 79, 199, 280, 296, 353, 386
FatI	CATG	2 cut(s)	278, 294
FblI	GTMKAC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	42, 102
Hin1II	CATG	2 cut(s)	282, 298
HinfI	GANTC	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	4 cut(s)	62, 235, 337, 371
Hpy188III	TCNNGA	5 cut(s)	109, 215, 226, 295, 404
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	201
HpyF3I	CTNAG	2 cut(s)	14, 123
Hsp92II	CATG	2 cut(s)	282, 298
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	2 cut(s)	66, 75
MaeI	CTAG	2 cut(s)	42, 102
MaeIII	GTNAC	3 cut(s)	257, 374, 437
MboII	GAAGA	4 cut(s)	58, 173, 248, 251
MluCI	AATT	2 cut(s)	298, 422
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	282, 298
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	100, 142
RsaNI	GTAC	2 cut(s)	99, 141
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	100
SetI	ASST	4 cut(s)	142, 222, 268, 352
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	2 cut(s)	298, 422
SspMI	CTAG	2 cut(s)	42, 102
TaqI	TCGA	1 cut(s)	403
TasI	AATT	2 cut(s)	298, 422
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	2 cut(s)	42, 102
ZrmI	AGTACT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.