Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Forward (+)

4886441 .. 4889655

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G067700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGACTCCATAGGCGTGCTCATGCCAGTTCCAATGTCCCCATATTTAGAGCAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTCTGGACCGTCCCTCAAAAAACCCAGTTCCTCAAGGACCATTCCGGCTCCATCCGAGCCGTCGTCGGTAATGCAGGGAACGGAGCGGATGCCGAGCTCATCGAGACTTTGCCGAAGCTGGAGATCGTGTCCAGTTTCAGCGTTGGGATCGATAAGGTCGATTTGAACAAGTGCAGGGAAAAGGGTATTCGGGTCACCAACACGCCCGATGTTTTGACCGATGACGTGGCGGACCTTGCTATTGGGTTGGCGTTGGCTGTGTTGAGAAGGCTCTGTGAGAGTGATCGGTATGTGAGGAGTGGGCAGTGGAAGAAGGGTGACTACAAGTTGACCACCAAGTTCACCGGAAAAACAGTTGGCATCCTCGGTCTGGGAAGAATTGGCAAAGCAGTTGCCAAGAGAGCTGAGGCTTTTAGCTGCCCAATCTCTTACCACTCCAGAACAGAAAAACCAGAGTTGAAGTACAAATACTATCCATGTGTTGTGGAGTTGGCCTCGAACTGTGATATTCTGGTTGTTGTGTGCGCATTAACTGAAGAGACCCGTCACATTATTAATCGTGAAGTCATTGATGCTTTGGGCCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCCTCATGTTGATGAACCTGAGCTGGTCTCTGCTCTGCTAGAAGGCCGGTTAGGTGGTGCTGGACTTGATGTTTATGAAAATGAACCAGAAGTACCTGAGCAGTTGTTTGAGCTTGAGAATGTGGTACTCTTGCCTCATGTAGGAAGTGACACTGTACAAACTGACACTGCCATGGCTGACCTTGTGATTGGGAATCTTGAGGCTCACTTTTCAAACAAACCATTGTTGACACCAGTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

314

Amino Acids

34.26

Weight (kDa)

5.4

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	2 cut(s)	170, 314
AclWI	GGATC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	4 cut(s)	548, 792, 825, 855
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	454, 839
AgsI	TTSAA	5 cut(s)	73, 82, 250, 544, 912
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	8 cut(s)	58, 85, 181, 202, 488, 501, 721, 811
AluI	AGCT	8 cut(s)	58, 85, 181, 202, 488, 501, 721, 811
Alw21I	GWGCWC	3 cut(s)	21, 60, 183
Alw26I	GTCTC	3 cut(s)	182, 617, 730
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	3 cut(s)	576, 664, 742
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	1 cut(s)	501
AseI	ATTAAT	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	69, 611
AspS9I	GGNCC	6 cut(s)	90, 121, 316, 664, 665, 698
AsuHPI	GGTGA	3 cut(s)	271, 413, 418
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	90, 121, 316, 698
BaeGI	GKGCMC	1 cut(s)	668
BanII	GRGCYC	3 cut(s)	60, 183, 668
BarI	GAAGNNNNNNTAC	4 cut(s)	389, 421, 536, 568
Bbv12I	GWGCWC	3 cut(s)	21, 60, 183
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	182, 617, 730
BfaI	CTAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	503
Bme18I	GGWCC	4 cut(s)	90, 121, 316, 698
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	6 cut(s)	90, 121, 316, 664, 665, 698
BmiI	GGNNCC	3 cut(s)	133, 666, 699
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	163, 453, 646
BmuI	ACTGGG	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	932
BplI	GAGNNNNNCTC	6 cut(s)	563, 595, 685, 717, 710, 742
BpmI	CTGGAG	2 cut(s)	224, 505
Bpu10I	CCTNAGC	3 cut(s)	489, 717, 795
BpuEI	CTTGAG	3 cut(s)	101, 833, 917
Bsa29I	ATCGAT	1 cut(s)	234
BsaI	GGTCTC	2 cut(s)	617, 730
BsaJI	CCNNGG	2 cut(s)	448, 870
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 839
Bse118I	RCCGGY	1 cut(s)	744
Bse1I	ACTGG	4 cut(s)	26, 109, 216, 932
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	448, 870
BseGI	GGATG	3 cut(s)	135, 178, 444
BseLI	CCNNNNNNNGG	2 cut(s)	454, 839
BseMII	CTCAG	3 cut(s)	480, 708, 786
BseNI	ACTGG	4 cut(s)	26, 109, 216, 932
BseRI	GAGGAG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	578, 666, 744
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	3 cut(s)	21, 60, 183
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	129, 429, 745
BslFI	GGGAC	2 cut(s)	22, 80
BslI	CCNNNNNNNGG	2 cut(s)	454, 839
BsmAI	GTCTC	3 cut(s)	182, 617, 730
BsmFI	GGGAC	2 cut(s)	22, 80
BsnI	GGCC	3 cut(s)	578, 666, 744
Bso31I	GGTCTC	2 cut(s)	617, 730
BsoBI	CYCGRG	1 cut(s)	59
Bsp120I	GGGCCC	1 cut(s)	664
Bsp1286I	GDGCHC	4 cut(s)	21, 60, 183, 668
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	3 cut(s)	207, 231, 367
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	2 cut(s)	170, 314
BspANI	GGCC	3 cut(s)	578, 666, 744
BspCNI	CTCAG	3 cut(s)	481, 709, 787
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	133, 666, 699
BspPI	GGATC	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	617, 730
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	744
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	26, 109, 216, 932
BssAI	RCCGGY	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	448, 870
BssMI	GATC	3 cut(s)	207, 231, 367
BssT1I	CCWWGG	1 cut(s)	870
Bst4CI	ACNGT	4 cut(s)	94, 439, 587, 853
Bst6I	CTCTTC	1 cut(s)	615
BstAUI	TGTACA	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	3 cut(s)	489, 717, 795
BstDSI	CCRYGG	1 cut(s)	870
BstEII	GGTNACC	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	3 cut(s)	135, 178, 444
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 611
BstKTI	GATC	3 cut(s)	210, 234, 370
BstMAI	GTCTC	3 cut(s)	182, 617, 730
BstMBI	GATC	3 cut(s)	207, 231, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
BstPAI	GACNNNNGTC	1 cut(s)	932
BstPI	GGTNACC	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	578, 666, 744
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	870
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	135, 178, 444
BtsI	GCAGTG	2 cut(s)	395, 864
BtsIMutI	CAGTG	3 cut(s)	395, 849, 864
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	2 cut(s)	69, 611
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	6 cut(s)	90, 121, 316, 664, 665, 698
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	547, 791, 824, 854
CviAII	CATG	5 cut(s)	22, 561, 704, 836, 871
CviQI	GTAC	4 cut(s)	547, 791, 824, 854
DdeI	CTNAG	3 cut(s)	489, 717, 795
DpnI	GATC	3 cut(s)	209, 233, 369
DpnII	GATC	3 cut(s)	207, 231, 367
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	2 cut(s)	58, 181
Eco130I	CCWWGG	1 cut(s)	870
Eco24I	GRGCYC	3 cut(s)	60, 183, 668
Eco31I	GGTCTC	2 cut(s)	617, 730
Eco47I	GGWCC	4 cut(s)	90, 121, 316, 698
Eco47III	AGCGCT	1 cut(s)	68
Eco53kI	GAGCTC	2 cut(s)	58, 181
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	2 cut(s)	58, 181
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	698
EcoO65I	GGTNACC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	870
EcoT38I	GRGCYC	3 cut(s)	60, 183, 668
ErhI	CCWWGG	1 cut(s)	870
FaeI	CATG	5 cut(s)	25, 564, 707, 839, 874
FaiI	YATR	9 cut(s)	11, 23, 43, 375, 562, 705, 774, 837, 872
FaqI	GGGAC	2 cut(s)	22, 80
FatI	CATG	5 cut(s)	21, 560, 703, 835, 870
Fnu4HI	GCNGC	1 cut(s)	502
FokI	GGATG	3 cut(s)	122, 185, 431
FriOI	GRGCYC	3 cut(s)	60, 183, 668
Fsp4HI	GCNGC	1 cut(s)	502
FspAI	RTGCGCAY	1 cut(s)	610
FspBI	CTAG	1 cut(s)	737
FspI	TGCGCA	1 cut(s)	610
GlaI	GCGC	2 cut(s)	68, 610
GluI	GCNGC	1 cut(s)	502
GsuI	CTGGAG	2 cut(s)	224, 505
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	578, 666, 744
HapII	CCGG	3 cut(s)	129, 429, 745
HhaI	GCGC	2 cut(s)	69, 611
Hin1II	CATG	5 cut(s)	25, 564, 707, 839, 874
Hin6I	GCGC	2 cut(s)	67, 609
HinP1I	GCGC	2 cut(s)	67, 609
HincII	GTYRAC	2 cut(s)	414, 927
HindII	GTYRAC	2 cut(s)	414, 927
HinfI	GANTC	2 cut(s)	5, 892
HpaII	CCGG	3 cut(s)	129, 429, 745
HphI	GGTGA	3 cut(s)	271, 413, 418
Hpy166II	GTNNAC	3 cut(s)	414, 426, 927
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	7 cut(s)	61, 79, 88, 187, 522, 644, 896
Hpy8I	GTNNAC	3 cut(s)	414, 426, 927
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	3 cut(s)	345, 391, 734
HpyCH4III	ACNGT	4 cut(s)	94, 439, 587, 853
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	158, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
HpyF3I	CTNAG	3 cut(s)	489, 717, 795
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	25, 564, 707, 839, 874
HspAI	GCGC	2 cut(s)	67, 609
Kzo9I	GATC	3 cut(s)	207, 231, 367
LmnI	GCTCC	2 cut(s)	137, 167
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	3 cut(s)	163, 453, 646
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	277, 401, 629, 845
MalI	GATC	3 cut(s)	209, 233, 369
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	3 cut(s)	207, 231, 367
MboII	GAAGA	3 cut(s)	406, 471, 632
MhlI	GDGCHC	4 cut(s)	21, 60, 183, 668
MluCI	AATT	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	4 cut(s)	614, 639, 684, 940
MslI	CAYNNNNRTG	3 cut(s)	14, 708, 869
MspI	CCGG	3 cut(s)	129, 429, 745
MwoI	GCNNNNNNNGC	3 cut(s)	64, 320, 485
NcoI	CCATGG	1 cut(s)	870
NdeII	GATC	3 cut(s)	207, 231, 367
NlaIII	CATG	5 cut(s)	25, 564, 707, 839, 874
NlaIV	GGNNCC	3 cut(s)	133, 666, 699
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	4 cut(s)	277, 401, 629, 845
NsbI	TGCGCA	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	892
PkrI	GCNGC	1 cut(s)	503
PpuMI	RGGWCCY	1 cut(s)	698
PshAI	GACNNNNGTC	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	2 cut(s)	60, 183
Psp5II	RGGWCCY	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	133, 666, 699
PspOMI	GGGCCC	1 cut(s)	664
PspPI	GGNCC	6 cut(s)	90, 121, 316, 664, 665, 698
PspPPI	RGGWCCY	1 cut(s)	698
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
RsaI	GTAC	4 cut(s)	548, 792, 825, 855
RsaNI	GTAC	4 cut(s)	547, 791, 824, 854
RseI	CAYNNNNRTG	3 cut(s)	14, 708, 869
SacI	GAGCTC	2 cut(s)	60, 183
SaqAI	TTAA	4 cut(s)	614, 639, 684, 940
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	3 cut(s)	207, 231, 367
Sau96I	GGNCC	6 cut(s)	90, 121, 316, 664, 665, 698
SduI	GDGCHC	4 cut(s)	21, 60, 183, 668
SfaNI	GCATC	3 cut(s)	163, 453, 646
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	4 cut(s)	90, 121, 316, 698
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	3 cut(s)	14, 708, 869
SmlI	CTYRAG	4 cut(s)	59, 116, 812, 896
SmoI	CTYRAG	4 cut(s)	59, 116, 812, 896
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	2 cut(s)	170, 314
SspMI	CTAG	1 cut(s)	737
SstI	GAGCTC	2 cut(s)	60, 183
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	4 cut(s)	94, 439, 587, 853
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	60, 186, 234, 243, 581
TaqII	GACCGA	2 cut(s)	317, 440
TasI	AATT	1 cut(s)	462
TatI	WGTACW	2 cut(s)	546, 853
TfiI	GAWTC	1 cut(s)	892
Tru1I	TTAA	4 cut(s)	614, 639, 684, 940
Tru9I	TTAA	4 cut(s)	614, 639, 684, 940
TscAI	CASTG	3 cut(s)	395, 856, 871
TseFI	GTSAC	4 cut(s)	277, 401, 629, 845
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	4 cut(s)	277, 401, 629, 845
TspDTI	ATGAA	3 cut(s)	726, 789, 795
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	395, 856, 871
VpaK11BI	GGWCC	4 cut(s)	90, 121, 316, 698
VspI	ATTAAT	1 cut(s)	639
XagI	CCTNNNNNAGG	1 cut(s)	837
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.