FvH4_6g31720

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
24821539 .. 24823473
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31720.t1

Sequence Viewer

Length: 960 bp
ATGAGAATCCCCCCAGCAATGGAGTCCATATGTGTCCTCCTACCAATCCCAATGTCCCCTTACTTAGAACAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTTTGGACCGCTCCCCACAAGACCCAGTTCATCAAGGACCACGCCGCCTCCATCCGCGCCATCGTCGGCAACGCCTCCGCCGGCGCCGACGCCGAGTTGATCGACTCTCTGCCCAAGTTGGAGATCGTCGCCAGTTACAGCGTTGGGATTGACAAGGTCGACTTGAAGTACTGCAAGGAAAAGGGTGTGAGGGTCACTAACACCCCCGACGTGTTGACCGATGACGTGGCCGACATTGCTATTGGGTTGACGCTGGCGGTGATGCGCCGGCTTTGCGAGAGTGACCGGTATGTCAGGAGTGGGCTGTGGAAGAAGGGTGACTTCAAGTTGACCACAAAGTTCACTGGACAAACAGTTGGTATTCTCGGTTTGGGAAGAATTGGCAAAGCAGTTGCCAGGAGAGCTGAGGCTTTCAGCTGCCCCATTGCCTACTCTTCCAGAACAGAAAAACCAGAATTGAAATACAAGTATTATCCGACTGTTGTGGAATTGGCTTCCAAATGTGATGTTCTAGTTGTTGCGTGCGCACTTACTGAAGAGACCCGCTACATTATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCATCATATTGATGAGCCTGAGTTGTTATCTGCACTGCTAGAAGGCCGATTAGGTGGAGCTGGCCTCGATGTGTATCAGAATGAACCAGAAGTACCGGAGCAGCTGTTTGGGCTTGAAAATGTGGTGCTCTTGCCTCACGCAGGAAGTGACACTACAGAAACTTGCAATGCAATGGCTGACCTTGTTATTGGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGTTAACACCTGTGGTTTAA

Protein Analysis

320

Amino Acids

34.91

Weight (kDa)

5.78

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 19 - 318 1.7e-24 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 115 - 287 1.6e-50 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
Acc16I TGCGCA 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 159
AciI CCGC 6 cut(s) 111, 147, 157, 180, 359, 646
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 2 cut(s) 186, 192
AfaI GTAC 2 cut(s) 272, 810
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 19, 857
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 387
AgsI TTSAA 7 cut(s) 91, 100, 268, 427, 562, 833, 931
AjiI CACGTC 2 cut(s) 313, 328
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 6 cut(s) 76, 103, 506, 519, 776, 820
AluI AGCT 6 cut(s) 76, 103, 506, 519, 776, 820
Alw21I GWGCWC 2 cut(s) 78, 846
Alw26I GTCTC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 4 cut(s) 330, 683, 760, 778
ApeKI GCWGC 2 cut(s) 519, 817
AsiGI ACCGGT 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 5 cut(s) 87, 161, 188, 369, 629
AspS9I GGNCC 3 cut(s) 108, 139, 683
AsuHPI GGTGA 2 cut(s) 373, 431
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 2 cut(s) 108, 139
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 853, 885
Bbv12I GWGCWC 2 cut(s) 78, 846
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 506, 829
BccI CCATC 2 cut(s) 161, 170
BciT130I CCWGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 2 cut(s) 614, 755
BfmI CTRYAG 1 cut(s) 870
BfoI RGCGCY 2 cut(s) 88, 189
BisI GCNGC 3 cut(s) 147, 520, 818
BlsI GCNGC 3 cut(s) 148, 521, 819
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 499
Bme18I GGWCC 2 cut(s) 108, 139
BmeT110I CYCGRG 1 cut(s) 77
BmgBI CACGTC 2 cut(s) 313, 328
BmgT120I GGNCC 3 cut(s) 108, 139, 683
BmiI GGNNCC 2 cut(s) 187, 684
BmrFI CCNGG 1 cut(s) 499
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 354, 664
BmuI ACTGGG 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 765, 797
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 2 cut(s) 186, 192
BsaI GGTCTC 1 cut(s) 635
BsaWI WCCGGW 2 cut(s) 387, 811
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 806, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 857
Bse118I RCCGGY 3 cut(s) 182, 369, 387
Bse1I ACTGG 3 cut(s) 127, 234, 451
Bse3DI GCAATG 5 cut(s) 24, 336, 525, 889, 894
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 499
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 19, 857
BseMI GCAATG 5 cut(s) 24, 336, 525, 889, 894
BseMII CTCAG 2 cut(s) 498, 726
BseNI ACTGG 3 cut(s) 127, 234, 451
BseXI GCAGC 2 cut(s) 506, 829
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 4 cut(s) 332, 685, 762, 780
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 78, 846
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 4 cut(s) 183, 370, 388, 812
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 19, 857
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 4 cut(s) 332, 685, 762, 780
Bso31I GGTCTC 1 cut(s) 635
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 78, 846
Bsp143I GATC 2 cut(s) 201, 225
BspACI CCGC 6 cut(s) 111, 147, 157, 180, 359, 646
BspANI GGCC 4 cut(s) 332, 685, 762, 780
BspCNI CTCAG 2 cut(s) 499, 727
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 187, 684
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 5 cut(s) 24, 336, 525, 889, 894
BsrFI RCCGGY 3 cut(s) 182, 369, 387
BsrI ACTGG 3 cut(s) 127, 234, 451
BssAI RCCGGY 3 cut(s) 182, 369, 387
BssMI GATC 2 cut(s) 201, 225
BssNI GRCGYC 2 cut(s) 186, 192
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 457, 583
Bst6I CTCTTC 2 cut(s) 541, 633
BstACI GRCGYC 2 cut(s) 186, 192
BstC8I GCNNGC 5 cut(s) 184, 357, 371, 625, 778
BstDEI CTNAG 3 cut(s) 64, 507, 735
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 2 cut(s) 88, 189
BstHHI GCGC 5 cut(s) 87, 161, 188, 369, 629
BstKTI GATC 2 cut(s) 204, 228
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 2 cut(s) 201, 225
BstMWI GCNNNNNNNGC 5 cut(s) 82, 338, 375, 503, 826
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 870
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 506, 829
BsuRI GGCC 4 cut(s) 332, 685, 762, 780
BtrI CACGTC 2 cut(s) 313, 328
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 2 cut(s) 444, 749
Cac8I GCNNGC 5 cut(s) 184, 357, 371, 625, 778
CfoI GCGC 5 cut(s) 87, 161, 188, 369, 629
Cfr10I RCCGGY 3 cut(s) 182, 369, 387
Cfr13I GGNCC 3 cut(s) 108, 139, 683
CseI GACGC 2 cut(s) 200, 361
Csp6I GTAC 2 cut(s) 271, 809
CspAI ACCGGT 1 cut(s) 387
CviQI GTAC 2 cut(s) 271, 809
DdeI CTNAG 3 cut(s) 64, 507, 735
DinI GGCGCC 1 cut(s) 187
DpnI GATC 2 cut(s) 203, 227
DpnII GATC 2 cut(s) 201, 225
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 541, 633
EarI CTCTTC 2 cut(s) 541, 633
EciI GGCGGA 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 108, 139
Eco47III AGCGCT 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaiI YATR 4 cut(s) 29, 31, 393, 723
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 407, 439
FaqI GGGAC 1 cut(s) 40
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 29
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 147, 520, 818
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 147, 520, 818
FspAI RTGCGCAY 1 cut(s) 628
FspBI CTAG 2 cut(s) 614, 755
FspI TGCGCA 1 cut(s) 628
GlaI GCGC 5 cut(s) 86, 160, 187, 368, 628
GluI GCNGC 3 cut(s) 147, 520, 818
GsaI CCCAGC 1 cut(s) 17
HaeII RGCGCY 2 cut(s) 88, 189
HaeIII GGCC 4 cut(s) 332, 685, 762, 780
HapII CCGG 4 cut(s) 183, 370, 388, 812
HgaI GACGC 2 cut(s) 200, 361
HhaI GCGC 5 cut(s) 87, 161, 188, 369, 629
Hin1I GRCGYC 2 cut(s) 186, 192
Hin6I GCGC 5 cut(s) 85, 159, 186, 367, 627
HinP1I GCGC 5 cut(s) 85, 159, 186, 367, 627
HincII GTYRAC 5 cut(s) 262, 318, 351, 432, 945
HindII GTYRAC 5 cut(s) 262, 318, 351, 432, 945
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 4 cut(s) 6, 23, 206, 910
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 4 cut(s) 183, 370, 388, 812
HphI GGTGA 2 cut(s) 373, 431
Hpy166II GTNNAC 6 cut(s) 262, 318, 351, 432, 444, 945
Hpy188I TCNGA 2 cut(s) 579, 795
Hpy188III TCNNGA 7 cut(s) 79, 97, 397, 540, 662, 914, 928
Hpy8I GTNNAC 6 cut(s) 262, 318, 351, 432, 444, 945
Hpy99I CGWCG 4 cut(s) 170, 194, 233, 314
HpyAV CCTTC 2 cut(s) 409, 752
HpyCH4III ACNGT 2 cut(s) 457, 583
HpyCH4IV ACGT 2 cut(s) 312, 327
HpyCH4V TGCA 4 cut(s) 276, 749, 882, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 338, 375, 503, 826
HpyF3I CTNAG 3 cut(s) 64, 507, 735
HpySE526I ACGT 2 cut(s) 312, 327
Hsp92I GRCGYC 2 cut(s) 186, 192
HspAI GCGC 5 cut(s) 85, 159, 186, 367, 627
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 2 cut(s) 182, 369
KroNI GCCGGC 2 cut(s) 184, 371
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 2 cut(s) 201, 225
LmnI GCTCC 3 cut(s) 118, 773, 814
Lsp1109I GCAGC 2 cut(s) 506, 829
LweI GCATC 2 cut(s) 354, 664
MaeI CTAG 2 cut(s) 614, 755
MaeII ACGT 2 cut(s) 312, 327
MaeIII GTNAC 5 cut(s) 236, 295, 383, 419, 863
MalI GATC 2 cut(s) 203, 227
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 201, 225
MboII GAAGA 4 cut(s) 424, 489, 528, 650
MhlI GDGCHC 2 cut(s) 78, 846
MluCI AATT 3 cut(s) 480, 557, 590
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 32, 200
MmeI TCCRAC 2 cut(s) 201, 602
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 2 cut(s) 182, 369
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 3 cut(s) 702, 944, 958
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 2 cut(s) 519, 820
MspI CCGG 4 cut(s) 183, 370, 388, 812
MspR9I CCNGG 1 cut(s) 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 82, 338, 375, 503, 826
NaeI GCCGGC 2 cut(s) 184, 371
NarI GGCGCC 1 cut(s) 186
NdeI CATATG 1 cut(s) 29
NdeII GATC 2 cut(s) 201, 225
NgoMIV GCCGGC 2 cut(s) 182, 369
NlaIV GGNNCC 2 cut(s) 187, 684
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 4 cut(s) 295, 383, 419, 863
NsbI TGCGCA 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 2 cut(s) 184, 371
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 6, 910
PflFI GACNNNGTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 387
PkrI GCNGC 3 cut(s) 148, 521, 819
PleI GAGTC 2 cut(s) 31, 200
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 31, 200
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 187, 684
PspPI GGNCC 3 cut(s) 108, 139, 683
PsrI GAACNNNNNNTAC 2 cut(s) 792, 824
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 2 cut(s) 519, 820
RsaI GTAC 2 cut(s) 272, 810
RsaNI GTAC 2 cut(s) 271, 809
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 78
SalI GTCGAC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 702, 944, 958
SatI GCNGC 3 cut(s) 147, 520, 818
Sau3AI GATC 2 cut(s) 201, 225
Sau96I GGNCC 3 cut(s) 108, 139, 683
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 2 cut(s) 32, 200
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 2 cut(s) 78, 846
SfaNI GCATC 2 cut(s) 354, 664
SfcI CTRYAG 1 cut(s) 870
SfoI GGCGCC 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 77
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 2 cut(s) 108, 139
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 77, 914
SmoI CTYRAG 2 cut(s) 77, 914
Sse9I AATT 3 cut(s) 480, 557, 590
SsiI CCGC 6 cut(s) 111, 147, 157, 180, 359, 646
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 614, 755
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 457, 583
TaiI ACGT 2 cut(s) 315, 330
TaqI TCGA 4 cut(s) 78, 204, 261, 783
TaqII GACCGA 1 cut(s) 335
TasI AATT 3 cut(s) 480, 557, 590
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 6, 910
Tru1I TTAA 3 cut(s) 702, 944, 958
Tru9I TTAA 3 cut(s) 702, 944, 958
TscAI CASTG 2 cut(s) 451, 756
TseFI GTSAC 4 cut(s) 295, 383, 419, 863
TseI GCWGC 2 cut(s) 519, 817
Tsp45I GTSAC 4 cut(s) 295, 383, 419, 863
TspDTI ATGAA 2 cut(s) 121, 813
TspRI CASTG 2 cut(s) 451, 756
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 108, 139
XagI CCTNNNNNAGG 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 614, 755
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.