Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

58282640 .. 58284555

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGACTCCATTGGCGTTCTCCTACCCATCCCAATGTCCCCTTACTTAGAACAAGAGCTCGAGAAGCGCTTCAACCTCTTGAAGCTCTGGACCGCTCCCCACAAGACCCAGTTCATCAAAGACCACGCCACCTCCATCCGCGCCATCGTCGGCAACTCCTCCGCCGGAGCCGACGCCGAGCTGATCGACTCTCTGCCCAAGCTGGAGATCGTCGCCAGCTACAGCGTTGGGATCGACAAGGTCGATTTGAAGTATTGCAAGGAAAAGGGTGTAAGGGTCACTAACACCCCCGACGTTTTGACCGAAGACGTGGCCGACATTGCTATTGGGTTGTCGCTGGCCGTCATGCGGCGGCTCTGCGAGAGTGACCGCTATGTCAGGAGTGGGCTGTGGAAGAAGGGTGACTACAAGTTGACCACCAAGTTCACTGGAAAAACAGTTGGTATCATCGGTATGGGAAGAATCGGCAAAGCAGTTGCTAAGAGAGCTGAGGCTTTTAGCTGCCCCATTGCCTACTTTTCCAGATCAGAAAAACCAGATTTGAAGTACAAGTATTATCCTACTGTTGTGGAATTGGCCTCCAACTGTGATGTTCTAGTTGTTGTATGCCCACTTACTGAAGAAACCCGCCACATTATCAATCGTGAAGTCATGAATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCCTCATGTTGATGAACCTGAGTTGGTATCTGCACTGCTAGAAGGCCGATTAGGTGGAGCTGGCCTCGATGTGTATCAGAATGAACCAGAAGTGCGGGAGGAGCTGTTTGGGCTTGAAAATGTGGTGCTCTTGCCTCATGTAGGAAGTGGCACTGTAGAAACTCGCAATGCAATGGCTGACCTTGTTATTGGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGTTGACACCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

313

Amino Acids

34.31

Weight (kDa)

6.13

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	13 - 312	1e-25	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	110 - 281	3.2e-54	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	141
AciI	CCGC	8 cut(s)	93, 139, 162, 349, 352, 370, 628, 793
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	2 cut(s)	312, 339
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	548
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	348, 839
AgsI	TTSAA	6 cut(s)	73, 82, 250, 544, 815, 913
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	9 cut(s)	58, 85, 181, 202, 219, 488, 501, 758, 802
AluI	AGCT	9 cut(s)	58, 85, 181, 202, 219, 488, 501, 758, 802
Alw21I	GWGCWC	2 cut(s)	60, 828
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	6 cut(s)	312, 339, 576, 665, 742, 760
ApeKI	GCWGC	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	69, 143
AspS9I	GGNCC	3 cut(s)	90, 665, 698
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	90, 698
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	60, 828
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	3 cut(s)	35, 143, 152
BceAI	ACGGC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	596, 737
BfmI	CTRYAG	2 cut(s)	220, 852
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	3 cut(s)	350, 353, 502
BlsI	GCNGC	3 cut(s)	351, 354, 503
Bme18I	GGWCC	2 cut(s)	90, 698
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	90, 665, 698
BmiI	GGNNCC	3 cut(s)	169, 666, 699
BmrI	ACTGGG	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	4 cut(s)	685, 717, 747, 779
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	174
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 788, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 839
Bse1I	ACTGG	2 cut(s)	109, 433
Bse3DI	GCAATG	4 cut(s)	318, 507, 871, 876
Bse8I	GATNNNNATC	1 cut(s)	771
BseGI	GGATG	2 cut(s)	27, 135
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	348, 839
BseMI	GCAATG	4 cut(s)	318, 507, 871, 876
BseMII	CTCAG	2 cut(s)	480, 708
BseNI	ACTGG	2 cut(s)	109, 433
BseRI	GAGGAG	2 cut(s)	148, 812
BseXI	GCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	6 cut(s)	314, 341, 578, 667, 744, 762
BsiHKAI	GWGCWC	2 cut(s)	60, 828
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	348, 839
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	6 cut(s)	314, 341, 578, 667, 744, 762
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	60, 828
Bsp143I	GATC	4 cut(s)	183, 207, 231, 524
BspACI	CCGC	8 cut(s)	93, 139, 162, 349, 352, 370, 628, 793
BspANI	GGCC	6 cut(s)	314, 341, 578, 667, 744, 762
BspCNI	CTCAG	2 cut(s)	481, 709
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	169, 666, 699
BspPI	GGATC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	4 cut(s)	318, 507, 871, 876
BsrI	ACTGG	2 cut(s)	109, 433
BssMI	GATC	4 cut(s)	183, 207, 231, 524
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	439, 565, 587, 853
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	217, 339, 760
BstDEI	CTNAG	4 cut(s)	46, 480, 489, 717
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	2 cut(s)	27, 135
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 143
BstKTI	GATC	4 cut(s)	186, 210, 234, 527
BstMBI	GATC	4 cut(s)	183, 207, 231, 524
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 320, 485, 799, 808
BstSFI	CTRYAG	2 cut(s)	220, 852
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	6 cut(s)	314, 341, 578, 667, 744, 762
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	27, 135
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	3 cut(s)	426, 731, 849
Cac8I	GCNNGC	3 cut(s)	217, 339, 760
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	2 cut(s)	69, 143
Cfr13I	GGNCC	3 cut(s)	90, 665, 698
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	346, 652, 704, 836
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	46, 480, 489, 717
DpnI	GATC	4 cut(s)	185, 209, 233, 526
DpnII	GATC	4 cut(s)	183, 207, 231, 524
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	312, 339
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	90, 698
Eco47III	AGCGCT	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	4 cut(s)	349, 655, 707, 839
FaiI	YATR	7 cut(s)	347, 375, 455, 607, 653, 705, 837
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	345, 651, 703, 835
FauI	CCCGC	2 cut(s)	635, 786
Fnu4HI	GCNGC	3 cut(s)	350, 353, 502
FokI	GGATG	2 cut(s)	14, 122
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	350, 353, 502
FspBI	CTAG	2 cut(s)	596, 737
GlaI	GCGC	2 cut(s)	68, 142
GluI	GCNGC	3 cut(s)	350, 353, 502
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	6 cut(s)	314, 341, 578, 667, 744, 762
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	69, 143
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	349, 655, 707, 839
Hin6I	GCGC	2 cut(s)	67, 141
HinP1I	GCGC	2 cut(s)	67, 141
HincII	GTYRAC	2 cut(s)	414, 927
HindII	GTYRAC	2 cut(s)	414, 927
HinfI	GANTC	4 cut(s)	5, 188, 462, 892
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	3 cut(s)	414, 426, 927
Hpy188I	TCNGA	2 cut(s)	529, 777
Hpy188III	TCNNGA	9 cut(s)	61, 79, 88, 379, 522, 644, 652, 896, 910
Hpy8I	GTNNAC	3 cut(s)	414, 426, 927
Hpy99I	CGWCG	4 cut(s)	152, 176, 215, 296
HpyAV	CCTTC	2 cut(s)	391, 734
HpyCH4III	ACNGT	4 cut(s)	439, 565, 587, 853
HpyCH4IV	ACGT	2 cut(s)	294, 309
HpyCH4V	TGCA	3 cut(s)	258, 731, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 320, 485, 799, 808
HpyF3I	CTNAG	4 cut(s)	46, 480, 489, 717
HpySE526I	ACGT	2 cut(s)	294, 309
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	349, 655, 707, 839
HspAI	GCGC	2 cut(s)	67, 141
Kzo9I	GATC	4 cut(s)	183, 207, 231, 524
LmnI	GCTCC	4 cut(s)	100, 167, 755, 799
Lsp1109I	GCAGC	1 cut(s)	488
MaeI	CTAG	2 cut(s)	596, 737
MaeII	ACGT	2 cut(s)	294, 309
MaeIII	GTNAC	3 cut(s)	277, 365, 401
MalI	GATC	4 cut(s)	185, 209, 233, 526
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	4 cut(s)	183, 207, 231, 524
MboII	GAAGA	4 cut(s)	317, 406, 471, 632
MhlI	GDGCHC	2 cut(s)	60, 828
MluCI	AATT	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	684, 940
MslI	CAYNNNNRTG	3 cut(s)	32, 452, 708
MspI	CCGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	661
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	5 cut(s)	64, 320, 485, 799, 808
NdeII	GATC	4 cut(s)	183, 207, 231, 524
NlaIII	CATG	4 cut(s)	349, 655, 707, 839
NlaIV	GGNNCC	3 cut(s)	169, 666, 699
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	277, 365, 401
PaeR7I	CTCGAG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 300
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	462, 892
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	351, 354, 503
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	169, 666, 699
PspPI	GGNCC	3 cut(s)	90, 665, 698
PspPPI	RGGWCCY	1 cut(s)	698
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	3 cut(s)	32, 452, 708
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	684, 940
SatI	GCNGC	3 cut(s)	350, 353, 502
Sau3AI	GATC	4 cut(s)	183, 207, 231, 524
Sau96I	GGNCC	3 cut(s)	90, 665, 698
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	60, 828
SfcI	CTRYAG	2 cut(s)	220, 852
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	90, 698
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	3 cut(s)	32, 452, 708
SmlI	CTYRAG	2 cut(s)	59, 896
SmoI	CTYRAG	2 cut(s)	59, 896
Sse9I	AATT	1 cut(s)	572
SsiI	CCGC	8 cut(s)	93, 139, 162, 349, 352, 370, 628, 793
SspMI	CTAG	2 cut(s)	596, 737
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	439, 565, 587, 853
TaiI	ACGT	2 cut(s)	297, 312
TaqI	TCGA	5 cut(s)	60, 186, 234, 243, 765
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	572
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	352, 355
TfiI	GAWTC	2 cut(s)	462, 892
Tru1I	TTAA	2 cut(s)	684, 940
Tru9I	TTAA	2 cut(s)	684, 940
TscAI	CASTG	3 cut(s)	433, 738, 856
TseFI	GTSAC	3 cut(s)	277, 365, 401
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	3 cut(s)	277, 365, 401
TspDTI	ATGAA	4 cut(s)	103, 668, 726, 795
TspRI	CASTG	3 cut(s)	433, 738, 856
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	90, 698
XagI	CCTNNNNNAGG	1 cut(s)	837
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	596, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.