Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474001.1

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Forward (+)

223 .. 2073

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474001.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggactccattgatgtgctcacgctagtcccaacatcgataagcgcttatttagaacaagaactcgataagcgcttcaacgtcctcaagctctggactgtccctgtccctaacaaaacccagttcatcaaggacaactccagttccatccgagccatcgtcggccacggcggcgttggagctgatgccgaactcattgacagtctgcccaacttggagatcatctccagcttcagcgttgggacggacaagattgatttgaagaaatgcaaggaaaagggtattcgggtcaccaacacacccgacgtgttgaccgatgacgtggccgacatcgccatcgggttggcgctggcggtcatgcggaggctgtgtgagagtgaccgctatgtcaggagtgggcagtggaagaagggtgactacaagttgaccaccaagttcaccggaaaaacagttggtatcattggtttgggaagaattggcaaagcagttgccaagagagctgaggcttttagctgccccattgcctacttctccagaacagaaaaactagaattgaagtacaagtattatcctactgttgtggaattggcctccaacagtgatgttctagttgttgcgtgcccactcactgaagaaacccgccacattatcaatcgtgaagtcattgatgcattggggccaaagggtgttctcattaacattgggaggggtcatcatgttgatgagcctgagttggtatctgcactgctagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

251

Amino Acids

27.55

Weight (kDa)

6.91

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AciI	CCGC	5 cut(s)	171, 353, 361, 382, 640
AcoI	YGGCCR	2 cut(s)	163, 324
AcuI	CTGAAG	2 cut(s)	217, 651
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	2 cut(s)	46, 74
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	79, 262, 556
AjiI	CACGTC	2 cut(s)	307, 322
AluBI	AGCT	5 cut(s)	91, 182, 231, 500, 513
AluI	AGCT	5 cut(s)	91, 182, 231, 500, 513
Alw21I	GWGCWC	1 cut(s)	21
Aor51HI	AGCGCT	2 cut(s)	46, 74
AoxI	GGCC	4 cut(s)	163, 324, 588, 677
ApeKI	GCWGC	1 cut(s)	513
AspLEI	GCGC	3 cut(s)	47, 75, 349
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	3 cut(s)	283, 425, 430
BaeGI	GKGCMC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
Bbv12I	GWGCWC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	3 cut(s)	155, 164, 344
BceAI	ACGGC	1 cut(s)	184
BfaI	CTAG	4 cut(s)	26, 548, 608, 749
BfoI	RGCGCY	3 cut(s)	48, 76, 350
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	172, 514
BlsI	GCNGC	2 cut(s)	173, 515
BmgBI	CACGTC	2 cut(s)	307, 322
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	678
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	175, 658
BmuI	ACTGGG	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	3 cut(s)	124, 211, 517
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bse1I	ACTGG	2 cut(s)	121, 141
Bse3DI	GCAATG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	492, 720
BseNI	ACTGG	2 cut(s)	121, 141
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	4 cut(s)	165, 326, 590, 679
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	4 cut(s)	14, 86, 92, 256
BsmFI	GGGAC	4 cut(s)	14, 86, 92, 256
BsnI	GGCC	4 cut(s)	165, 326, 590, 679
Bsp1286I	GDGCHC	2 cut(s)	21, 623
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	171, 353, 361, 382, 640
BspANI	GGCC	4 cut(s)	165, 326, 590, 679
BspCNI	CTCAG	2 cut(s)	493, 721
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	121, 141
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	219
Bst4CI	ACNGT	5 cut(s)	100, 203, 451, 577, 599
BstC8I	GCNNGC	2 cut(s)	351, 619
BstDEI	CTNAG	2 cut(s)	501, 729
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	3 cut(s)	48, 76, 350
BstHHI	GCGC	3 cut(s)	47, 75, 349
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
BstPI	GGTNACC	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	165, 326, 590, 679
BsuTUI	ATCGAT	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	316
BtrI	CACGTC	2 cut(s)	307, 322
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	2 cut(s)	407, 743
BtsIMutI	CAGTG	4 cut(s)	407, 604, 627, 743
Cac8I	GCNNGC	2 cut(s)	351, 619
CfoI	GCGC	3 cut(s)	47, 75, 349
Cfr13I	GGNCC	1 cut(s)	677
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	2 cut(s)	358, 716
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	2 cut(s)	501, 729
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	163, 324
Eco47III	AGCGCT	2 cut(s)	46, 74
Eco57I	CTGAAG	2 cut(s)	217, 651
Eco91I	GGTNACC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	673
FaeI	CATG	2 cut(s)	361, 719
FaiI	YATR	3 cut(s)	359, 387, 717
FaqI	GGGAC	4 cut(s)	14, 86, 92, 256
FatI	CATG	2 cut(s)	357, 715
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	2 cut(s)	172, 514
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	172, 514
FspBI	CTAG	4 cut(s)	26, 548, 608, 749
GlaI	GCGC	3 cut(s)	46, 74, 348
GluI	GCNGC	2 cut(s)	172, 514
GsuI	CTGGAG	3 cut(s)	124, 211, 517
HaeII	RGCGCY	3 cut(s)	48, 76, 350
HaeIII	GGCC	4 cut(s)	165, 326, 590, 679
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	3 cut(s)	47, 75, 349
Hin1II	CATG	2 cut(s)	361, 719
Hin6I	GCGC	3 cut(s)	45, 73, 347
HinP1I	GCGC	3 cut(s)	45, 73, 347
HincII	GTYRAC	2 cut(s)	312, 426
HindII	GTYRAC	2 cut(s)	312, 426
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	283, 425, 430
Hpy166II	GTNNAC	3 cut(s)	312, 426, 438
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	4 cut(s)	94, 391, 534, 656
Hpy8I	GTNNAC	3 cut(s)	312, 426, 438
Hpy99I	CGWCG	2 cut(s)	164, 308
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	5 cut(s)	100, 203, 451, 577, 599
HpyCH4IV	ACGT	3 cut(s)	81, 306, 321
HpyCH4V	TGCA	3 cut(s)	270, 671, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
HpyF3I	CTNAG	2 cut(s)	501, 729
HpySE526I	ACGT	3 cut(s)	81, 306, 321
Hsp92II	CATG	2 cut(s)	361, 719
HspAI	GCGC	3 cut(s)	45, 73, 347
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	175, 658
MaeI	CTAG	4 cut(s)	26, 548, 608, 749
MaeII	ACGT	3 cut(s)	81, 306, 321
MaeIII	GTNAC	3 cut(s)	289, 377, 413
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	4 cut(s)	274, 418, 483, 644
MhlI	GDGCHC	2 cut(s)	21, 623
MluCI	AATT	3 cut(s)	474, 551, 584
MmeI	TCCRAC	2 cut(s)	157, 618
MnlI	CCTC	5 cut(s)	95, 357, 496, 601, 699
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	14, 720
MspI	CCGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	361, 719
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	3 cut(s)	289, 377, 413
NsiI	ATGCAT	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	173, 515
PspEI	GGTNACC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	677
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	2 cut(s)	14, 720
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	2 cut(s)	172, 514
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	21, 623
SetI	ASST	8 cut(s)	84, 93, 184, 233, 309, 324, 502, 515
SfaNI	GCATC	2 cut(s)	175, 658
SmiMI	CAYNNNNRTG	2 cut(s)	14, 720
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	474, 551, 584
SsiI	CCGC	5 cut(s)	171, 353, 361, 382, 640
SspMI	CTAG	4 cut(s)	26, 548, 608, 749
TaaI	ACNGT	5 cut(s)	100, 203, 451, 577, 599
TaiI	ACGT	3 cut(s)	84, 309, 324
TaqI	TCGA	2 cut(s)	38, 66
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	474, 551, 584
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	4 cut(s)	407, 604, 634, 750
TseFI	GTSAC	3 cut(s)	289, 377, 413
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	3 cut(s)	289, 377, 413
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	4 cut(s)	407, 604, 634, 750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XspI	CTAG	4 cut(s)	26, 548, 608, 749
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.