pycom09g12630

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
11191900 .. 11193950
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12630.2

Sequence Viewer

Length: 948 bp
ATGGAGTCCATCGGCGTCCTCATGCCGATCCCCATGTCCCCCTACTTGGAGCAGGAGCTCGAGAAGCGCTTCAACCTCCTCAAGCTTTGGACTGTCCCCCACAAAACGCAGTTCATCAAGGACCACTCCGCCTCCATCCGCGCCATCGTCGGCAACGCCTCCGCCGGAGCCGACGGCGAGCTCATCGCCGCTCTGCCGAAGCTGGAGATTATTTCCAGTTTCAGCGTCGGAATCGATAAGGTCGATTTGAAGACGTGTAAGGAAAAGGGTATTCGGGTAACCAACACGCCCGACGTTTTGACCGATGACGTGGCGGACCTTGCTATTGGGCTGACGTTGGCTGTGCTGAGACGGCTCTGTGAGAGTGAACGGTATGTGAGGAGTGGGCAGTGGAAGAAGGGCGACTACAAGTTGACCACCAAGGTGAGTTCACTGGGAAAACAGTTGGGATCGATCGGTCTCGGAAGAATTGGCAAAGCAGTTGCGAAGAGAGCCGAGGGTTTTAGCTGCCCAATTGCTTACTTTTCCAGGACAGAAAAGCCAGATTCGAAGTTCAAATACTACCCAACTGTCGTGGAGTTGGCCGCTAACTGCGATGTTTTAGTTGTTGCATGCCCCTTAACTGAAGAGACCCGCCACATTATCAACCGCCAAGTCATTAATGCTTTGGGACCAAAGGGTGTTCTCATCAACATTGGGAGAGGCCCTCATGTTGACGAAGCTGAGTTGGTATCTGCTCTGGTAGAAGGCCGGTTAGGTGGGGCGGGGCTTGATGTCTATGAGAATGAACCAGAAGTACCCGAGCAGCTGTTCGCTCTCGAGAATGTGGTCCTCTTGCCTCATGTCGGAAGCGGCACGGTAGAAACTCGCAATGCCATGGCTGACCTTGTGGTTGGGAATCTTGAGGCTCACTTCTTGAAGAAACCATTGTTGACACCAGTGGCCTAA

Protein Analysis

316

Amino Acids

34.16

Weight (kDa)

6.62

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 1 cut(s) 141
AclWI GGATC 2 cut(s) 22, 457
AcoI YGGCCR 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 798
AfeI AGCGCT 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 46, 845
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 4 cut(s) 73, 250, 556, 919
AjiI CACGTC 2 cut(s) 255, 310
AjnI CCWGG 1 cut(s) 527
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 7 cut(s) 58, 85, 181, 202, 507, 722, 808
AluI AGCT 7 cut(s) 58, 85, 181, 202, 507, 722, 808
Alw21I GWGCWC 2 cut(s) 60, 183
Alw26I GTCTC 3 cut(s) 343, 464, 623
AlwI GGATC 2 cut(s) 22, 457
Ama87I CYCGRG 3 cut(s) 59, 800, 818
Aor51HI AGCGCT 1 cut(s) 68
AoxI GGCC 4 cut(s) 582, 703, 748, 942
ApeKI GCWGC 2 cut(s) 507, 805
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 2 cut(s) 69, 143
AspS9I GGNCC 5 cut(s) 121, 316, 671, 704, 829
AsuHPI GGTGA 1 cut(s) 436
AsuII TTCGAA 1 cut(s) 548
AvaI CYCGRG 3 cut(s) 59, 800, 818
AvaII GGWCC 4 cut(s) 121, 316, 671, 829
BanII GRGCYC 2 cut(s) 60, 183
BarI GAAGNNNNNNTAC 4 cut(s) 389, 421, 542, 574
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 60, 183
BbvI GCAGC 2 cut(s) 494, 817
BccI CCATC 3 cut(s) 17, 143, 152
BceAI ACGGC 2 cut(s) 190, 368
BciT130I CCWGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 343, 464, 623
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 5 cut(s) 189, 508, 585, 806, 853
BlsI GCNGC 5 cut(s) 190, 509, 586, 807, 854
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 4 cut(s) 121, 316, 671, 829
BmeT110I CYCGRG 3 cut(s) 59, 800, 818
BmgBI CACGTC 2 cut(s) 255, 310
BmgT120I GGNCC 5 cut(s) 121, 316, 671, 704, 829
BmiI GGNNCC 2 cut(s) 169, 672
BmrFI CCNGG 1 cut(s) 529
BmrI ACTGGG 1 cut(s) 443
BmuI ACTGGG 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 691, 723
BpmI CTGGAG 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 2 cut(s) 65, 923
Bsa29I ATCGAT 2 cut(s) 234, 452
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 2 cut(s) 464, 623
BsaJI CCNNGG 3 cut(s) 420, 495, 876
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 845
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 3 cut(s) 216, 438, 938
Bse3DI GCAATG 1 cut(s) 877
BseBI CCWGG 1 cut(s) 529
BseCI ATCGAT 2 cut(s) 234, 452
BseDI CCNNGG 3 cut(s) 420, 495, 876
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 46, 845
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 2 cut(s) 338, 714
BseNI ACTGG 3 cut(s) 216, 438, 938
BseRI GAGGAG 2 cut(s) 68, 394
BseXI GCAGC 2 cut(s) 494, 817
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 4 cut(s) 584, 705, 750, 944
BshVI ATCGAT 2 cut(s) 234, 452
BsiEI CGRYCG 1 cut(s) 456
BsiHKAI GWGCWC 2 cut(s) 60, 183
BsiHKCI CYCGRG 3 cut(s) 59, 800, 818
BsiSI CCGG 2 cut(s) 165, 751
BslFI GGGAC 3 cut(s) 22, 80, 684
BslI CCNNNNNNNGG 2 cut(s) 46, 845
BsmAI GTCTC 3 cut(s) 343, 464, 623
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 3 cut(s) 22, 80, 684
BsnI GGCC 4 cut(s) 584, 705, 750, 944
Bso31I GGTCTC 2 cut(s) 464, 623
BsoBI CYCGRG 3 cut(s) 59, 800, 818
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 60, 183
Bsp143I GATC 3 cut(s) 27, 449, 453
Bsp19I CCATGG 1 cut(s) 876
BspANI GGCC 4 cut(s) 584, 705, 750, 944
BspCNI CTCAG 2 cut(s) 339, 715
BspDI ATCGAT 2 cut(s) 234, 452
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 169, 672
BspPI GGATC 2 cut(s) 22, 457
BspT104I TTCGAA 1 cut(s) 548
BspTNI GGTCTC 2 cut(s) 464, 623
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 3 cut(s) 216, 438, 938
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 3 cut(s) 420, 495, 876
BssMI GATC 3 cut(s) 27, 449, 453
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 420, 876
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 5 cut(s) 94, 372, 444, 571, 859
Bst6I CTCTTC 2 cut(s) 482, 621
BstACI GRCGYC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 179, 613
BstDEI CTNAG 2 cut(s) 347, 723
BstDSI CCRYGG 1 cut(s) 876
BstEII GGTNACC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 143
BstKTI GATC 3 cut(s) 30, 452, 456
BstMAI GTCTC 3 cut(s) 343, 464, 623
BstMBI GATC 3 cut(s) 27, 449, 453
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 4 cut(s) 64, 320, 352, 491
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 615
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 527
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 494, 817
BstV2I GAAGAC 1 cut(s) 257
Bsu15I ATCGAT 2 cut(s) 234, 452
BsuRI GGCC 4 cut(s) 584, 705, 750, 944
BsuTUI ATCGAT 2 cut(s) 234, 452
BtgI CCRYGG 1 cut(s) 876
BtgZI GCGATG 2 cut(s) 169, 609
BtrI CACGTC 2 cut(s) 255, 310
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 395, 431, 945
Cac8I GCNNGC 2 cut(s) 179, 613
CfoI GCGC 2 cut(s) 69, 143
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 5 cut(s) 121, 316, 671, 704, 829
ClaI ATCGAT 2 cut(s) 234, 452
CseI GACGC 2 cut(s) 4, 214
Csp6I GTAC 1 cut(s) 797
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 6 cut(s) 22, 34, 612, 710, 842, 877
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 2 cut(s) 347, 723
DpnI GATC 3 cut(s) 29, 451, 455
DpnII GATC 3 cut(s) 27, 449, 453
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 482, 621
EarI CTCTTC 2 cut(s) 482, 621
EciI GGCGGA 3 cut(s) 118, 151, 329
Ecl136II GAGCTC 2 cut(s) 58, 181
Eco130I CCWWGG 2 cut(s) 420, 876
Eco24I GRGCYC 2 cut(s) 60, 183
Eco31I GGTCTC 2 cut(s) 464, 623
Eco47I GGWCC 4 cut(s) 121, 316, 671, 829
Eco47III AGCGCT 1 cut(s) 68
Eco53kI GAGCTC 2 cut(s) 58, 181
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 3 cut(s) 59, 800, 818
Eco91I GGTNACC 1 cut(s) 277
EcoICRI GAGCTC 2 cut(s) 58, 181
EcoO109I RGGNCCY 1 cut(s) 704
EcoO65I GGTNACC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 2 cut(s) 420, 876
EcoT38I GRGCYC 2 cut(s) 60, 183
ErhI CCWWGG 2 cut(s) 420, 876
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 6 cut(s) 25, 37, 615, 713, 845, 880
FaiI YATR 8 cut(s) 23, 35, 375, 613, 711, 780, 843, 878
FaqI GGGAC 3 cut(s) 22, 80, 684
FatI CATG 6 cut(s) 21, 33, 611, 709, 841, 876
FauI CCCGC 2 cut(s) 641, 757
Fnu4HI GCNGC 5 cut(s) 189, 508, 585, 806, 853
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 2 cut(s) 60, 183
Fsp4HI GCNGC 5 cut(s) 189, 508, 585, 806, 853
GlaI GCGC 2 cut(s) 68, 142
GluI GCNGC 5 cut(s) 189, 508, 585, 806, 853
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 4 cut(s) 584, 705, 750, 944
HapII CCGG 2 cut(s) 165, 751
HgaI GACGC 2 cut(s) 4, 214
HhaI GCGC 2 cut(s) 69, 143
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 6 cut(s) 25, 37, 615, 713, 845, 880
Hin6I GCGC 2 cut(s) 67, 141
HinP1I GCGC 2 cut(s) 67, 141
HincII GTYRAC 3 cut(s) 414, 715, 933
HindII GTYRAC 3 cut(s) 414, 715, 933
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 4 cut(s) 5, 231, 545, 898
HpaII CCGG 2 cut(s) 165, 751
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 5 cut(s) 368, 414, 431, 715, 933
Hpy188I TCNGA 3 cut(s) 230, 464, 848
Hpy188III TCNNGA 5 cut(s) 61, 818, 820, 902, 916
Hpy8I GTNNAC 5 cut(s) 368, 414, 431, 715, 933
Hpy99I CGWCG 4 cut(s) 152, 176, 230, 296
HpyAV CCTTC 2 cut(s) 391, 740
HpyCH4III ACNGT 5 cut(s) 94, 372, 444, 571, 859
HpyCH4IV ACGT 4 cut(s) 254, 294, 309, 335
HpyCH4V TGCA 1 cut(s) 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 320, 352, 491
HpyF3I CTNAG 2 cut(s) 347, 723
HpySE526I ACGT 4 cut(s) 254, 294, 309, 335
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 6 cut(s) 25, 37, 615, 713, 845, 880
HspAI GCGC 2 cut(s) 67, 141
Kzo9I GATC 3 cut(s) 27, 449, 453
LmnI GCTCC 3 cut(s) 49, 55, 167
Lsp1109I GCAGC 2 cut(s) 494, 817
MaeII ACGT 4 cut(s) 254, 294, 309, 335
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 29, 451, 455
MbiI CCGCTC 1 cut(s) 191
MboI GATC 3 cut(s) 27, 449, 453
MboII GAAGA 6 cut(s) 262, 406, 477, 499, 638, 931
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 2 cut(s) 60, 183
MluCI AATT 2 cut(s) 468, 513
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 208, 826
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 620, 660
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 2 cut(s) 165, 751
MspR9I CCNGG 1 cut(s) 529
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 64, 320, 352, 491
NcoI CCATGG 1 cut(s) 876
NdeII GATC 3 cut(s) 27, 449, 453
NlaIII CATG 6 cut(s) 25, 37, 615, 713, 845, 880
NlaIV GGNNCC 2 cut(s) 169, 672
NmeAIII GCCGAG 1 cut(s) 520
NspI RCATGY 1 cut(s) 615
NspV TTCGAA 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 422
PaeI GCATGC 1 cut(s) 615
PaeR7I CTCGAG 2 cut(s) 59, 818
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 300
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 231, 545, 898
PfoI TCCNGGA 1 cut(s) 527
PkrI GCNGC 5 cut(s) 190, 509, 586, 807, 854
Ple19I CGATCG 1 cut(s) 456
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 660
Psp124BI GAGCTC 2 cut(s) 60, 183
Psp6I CCWGG 1 cut(s) 527
PspEI GGTNACC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 169, 672
PspPI GGNCC 5 cut(s) 121, 316, 671, 704, 829
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PvuI CGATCG 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 2 cut(s) 60, 183
SaqAI TTAA 2 cut(s) 620, 660
SatI GCNGC 5 cut(s) 189, 508, 585, 806, 853
Sau3AI GATC 3 cut(s) 27, 449, 453
Sau96I GGNCC 5 cut(s) 121, 316, 671, 704, 829
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 2 cut(s) 60, 183
Sfr274I CTCGAG 2 cut(s) 59, 818
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 4 cut(s) 121, 316, 671, 829
SlaI CTCGAG 2 cut(s) 59, 818
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 4 cut(s) 59, 80, 818, 902
SmoI CTYRAG 4 cut(s) 59, 80, 818, 902
SphI GCATGC 1 cut(s) 615
Sse9I AATT 2 cut(s) 468, 513
SstI GAGCTC 2 cut(s) 60, 183
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 2 cut(s) 420, 876
TaaI ACNGT 5 cut(s) 94, 372, 444, 571, 859
TaiI ACGT 4 cut(s) 257, 297, 312, 338
TaqI TCGA 6 cut(s) 60, 234, 243, 452, 548, 819
TaqII GACCGA 2 cut(s) 317, 446
TasI AATT 2 cut(s) 468, 513
TauI GCSGC 3 cut(s) 191, 587, 855
TfiI GAWTC 3 cut(s) 231, 545, 898
Tru1I TTAA 2 cut(s) 620, 660
Tru9I TTAA 2 cut(s) 620, 660
TscAI CASTG 3 cut(s) 395, 438, 945
TseI GCWGC 2 cut(s) 507, 805
TspDTI ATGAA 2 cut(s) 103, 801
TspRI CASTG 3 cut(s) 395, 438, 945
VpaK11BI GGWCC 4 cut(s) 121, 316, 671, 829
VspI ATTAAT 1 cut(s) 660
XceI RCATGY 1 cut(s) 615
XhoI CTCGAG 2 cut(s) 59, 818
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.