Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

56523618 .. 56525966

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGACTCCATTGATGTGCTCACGCTAGTCCCAACATCGATAAGCGCTTATTTAGAACAAGAACTCGATAAGCGCTTCAACGTCCTCAAGCTCTGGACTGTCCCTGTCCCTAACAAAACCCAGTTCATCAAGGACAACTCCAGTTCCATCCGAGCCATCGTCGGCCACGGCGGCGTTGGAGCTGATGCCGAACTCATTGACAGTCTGCCCAACTTGGAGATCATCTCCAGCTTCAGCGTTGGGACGGACAAGATTGATTTGAAGAAATGCAAGGAAAAGGGTATTCGGGTCACCAACACACCCGACGTGTTGACCGATGACGTGGCCGATATCGCCATCGGGTTGGCGCTGGCGGTCATGCGGAGGCTGTGTGAGAGTGACCGCTATGTCAGGAGTGGGCAGTGGAAGAAGGGTGACTACAAGTTGACCACCAAGTTCACCGGAAAAACAGTTGGTATCATTGGTTTGGGAAGAATTGGCAAAGCAGTTGCCAAGAGAGCTGTGGCTTTTAGCTGCCCCATTGCCTACTTCTCCAGAACAGAAAAACTAGAATTGAAGTACAAGTATTATCCTACTGTTGTGGAATTGGCCTCCAACAGTGATGTTCTAGTTGTTGCGTGCCCACTCACTGAAGAAACCCGCCACATTATCAATCGTGAAGTCATTGATGCATTGGGGCCAAAGGGTGTACTCATTAACATTGGGAGGGGTCATCATGTTGATGAGCCTGAGTTGGTATCTGCACTGCTAGAAGGCCGATTAGGTGGAGCTGGCCTTGATGTGTATCAAAATGAACCAGAAGTACCAGAGCAGCTGTTTGGTTTTGAAAATGTGGTGCTCTTGCCTCATGCAGGAAGTGGTACTACTGAAACTCGCAATGCAATGGCTGACCTTGTTATTGGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGCTGACCCCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

317

Amino Acids

34.53

Weight (kDa)

5.93

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	20 - 316	7.3e-24	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	113 - 285	6.8e-54	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AciI	CCGC	5 cut(s)	171, 353, 361, 382, 640
AcoI	YGGCCR	2 cut(s)	163, 324
AcuI	CTGAAG	2 cut(s)	217, 651
AfaI	GTAC	4 cut(s)	560, 690, 804, 862
AfeI	AGCGCT	2 cut(s)	46, 74
AfiI	CCNNNNNNNGG	1 cut(s)	851
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	5 cut(s)	79, 262, 556, 827, 925
AjiI	CACGTC	2 cut(s)	307, 322
AluBI	AGCT	7 cut(s)	91, 182, 231, 500, 513, 770, 814
AluI	AGCT	7 cut(s)	91, 182, 231, 500, 513, 770, 814
Alw21I	GWGCWC	2 cut(s)	21, 840
Aor51HI	AGCGCT	2 cut(s)	46, 74
AoxI	GGCC	6 cut(s)	163, 324, 588, 677, 754, 772
ApeKI	GCWGC	2 cut(s)	513, 811
AspLEI	GCGC	3 cut(s)	47, 75, 349
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	3 cut(s)	283, 425, 430
BaeGI	GKGCMC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	4 cut(s)	401, 433, 847, 879
Bbv12I	GWGCWC	2 cut(s)	21, 840
BbvI	GCAGC	2 cut(s)	500, 823
BccI	CCATC	3 cut(s)	155, 164, 344
BceAI	ACGGC	1 cut(s)	184
BfaI	CTAG	4 cut(s)	26, 548, 608, 749
BfoI	RGCGCY	3 cut(s)	48, 76, 350
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	172, 514, 812
BlsI	GCNGC	3 cut(s)	173, 515, 813
BmgBI	CACGTC	2 cut(s)	307, 322
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	678
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	175, 658
BmuI	ACTGGG	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	3 cut(s)	124, 211, 517
BpuEI	CTTGAG	2 cut(s)	71, 929
Bsa29I	ATCGAT	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	2 cut(s)	121, 141
Bse3DI	GCAATG	4 cut(s)	519, 883, 888, 932
Bse8I	GATNNNNATC	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	4 cut(s)	519, 883, 888, 932
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	121, 141
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	500, 823
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	6 cut(s)	165, 326, 590, 679, 756, 774
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	21, 840
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	4 cut(s)	14, 86, 92, 256
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmFI	GGGAC	4 cut(s)	14, 86, 92, 256
BsnI	GGCC	6 cut(s)	165, 326, 590, 679, 756, 774
Bsp1286I	GDGCHC	3 cut(s)	21, 623, 840
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	171, 353, 361, 382, 640
BspANI	GGCC	6 cut(s)	165, 326, 590, 679, 756, 774
BspCNI	CTCAG	1 cut(s)	721
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	678
BsrDI	GCAATG	4 cut(s)	519, 883, 888, 932
BsrI	ACTGG	2 cut(s)	121, 141
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	219
Bst4CI	ACNGT	5 cut(s)	100, 203, 451, 577, 599
BstC8I	GCNNGC	3 cut(s)	351, 619, 772
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	3 cut(s)	48, 76, 350
BstHHI	GCGC	3 cut(s)	47, 75, 349
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
BstPI	GGTNACC	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	500, 823
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	38
BsuRI	GGCC	6 cut(s)	165, 326, 590, 679, 756, 774
BsuTUI	ATCGAT	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	166
BtrI	CACGTC	2 cut(s)	307, 322
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	2 cut(s)	407, 743
BtsIMutI	CAGTG	4 cut(s)	407, 604, 627, 743
Cac8I	GCNNGC	3 cut(s)	351, 619, 772
CfoI	GCGC	3 cut(s)	47, 75, 349
Cfr13I	GGNCC	1 cut(s)	677
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	559, 689, 803, 861
CviAII	CATG	3 cut(s)	358, 716, 848
CviQI	GTAC	4 cut(s)	559, 689, 803, 861
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	163, 324
Eco32I	GATATC	1 cut(s)	331
Eco47III	AGCGCT	2 cut(s)	46, 74
Eco57I	CTGAAG	2 cut(s)	217, 651
Eco91I	GGTNACC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoO65I	GGTNACC	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	673
FaeI	CATG	3 cut(s)	361, 719, 851
FaiI	YATR	4 cut(s)	359, 387, 717, 849
FaqI	GGGAC	4 cut(s)	14, 86, 92, 256
FatI	CATG	3 cut(s)	357, 715, 847
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	3 cut(s)	172, 514, 812
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	172, 514, 812
FspBI	CTAG	4 cut(s)	26, 548, 608, 749
GlaI	GCGC	3 cut(s)	46, 74, 348
GluI	GCNGC	3 cut(s)	172, 514, 812
GsuI	CTGGAG	3 cut(s)	124, 211, 517
HaeII	RGCGCY	3 cut(s)	48, 76, 350
HaeIII	GGCC	6 cut(s)	165, 326, 590, 679, 756, 774
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	3 cut(s)	47, 75, 349
Hin1II	CATG	3 cut(s)	361, 719, 851
Hin6I	GCGC	3 cut(s)	45, 73, 347
HinP1I	GCGC	3 cut(s)	45, 73, 347
HincII	GTYRAC	2 cut(s)	312, 426
HindII	GTYRAC	2 cut(s)	312, 426
HinfI	GANTC	2 cut(s)	5, 904
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	283, 425, 430
Hpy166II	GTNNAC	4 cut(s)	312, 426, 438, 689
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	6 cut(s)	94, 391, 534, 656, 908, 922
Hpy8I	GTNNAC	4 cut(s)	312, 426, 438, 689
Hpy99I	CGWCG	2 cut(s)	164, 308
HpyAV	CCTTC	2 cut(s)	403, 746
HpyCH4III	ACNGT	5 cut(s)	100, 203, 451, 577, 599
HpyCH4IV	ACGT	3 cut(s)	81, 306, 321
HpyCH4V	TGCA	5 cut(s)	270, 671, 743, 851, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	3 cut(s)	81, 306, 321
Hsp92II	CATG	3 cut(s)	361, 719, 851
HspAI	GCGC	3 cut(s)	45, 73, 347
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	179, 767
Lsp1109I	GCAGC	2 cut(s)	500, 823
LweI	GCATC	2 cut(s)	175, 658
MaeI	CTAG	4 cut(s)	26, 548, 608, 749
MaeII	ACGT	3 cut(s)	81, 306, 321
MaeIII	GTNAC	3 cut(s)	289, 377, 413
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	4 cut(s)	274, 418, 483, 644
MhlI	GDGCHC	3 cut(s)	21, 623, 840
MluCI	AATT	3 cut(s)	474, 551, 584
MmeI	TCCRAC	2 cut(s)	157, 618
MnlI	CCTC	6 cut(s)	95, 357, 601, 699, 855, 904
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	2 cut(s)	696, 952
MslI	CAYNNNNRTG	2 cut(s)	14, 720
MspA1I	CMGCKG	1 cut(s)	814
MspI	CCGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	171, 332, 497
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	3 cut(s)	361, 719, 851
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	3 cut(s)	289, 377, 413
NsiI	ATGCAT	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	904
PkrI	GCNGC	3 cut(s)	173, 515, 813
PspEI	GGTNACC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	677
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	4 cut(s)	560, 690, 804, 862
RsaNI	GTAC	4 cut(s)	559, 689, 803, 861
RseI	CAYNNNNRTG	2 cut(s)	14, 720
SaqAI	TTAA	2 cut(s)	696, 952
SatI	GCNGC	3 cut(s)	172, 514, 812
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	677
SduI	GDGCHC	3 cut(s)	21, 623, 840
SfaNI	GCATC	2 cut(s)	175, 658
SmiMI	CAYNNNNRTG	2 cut(s)	14, 720
SmlI	CTYRAG	2 cut(s)	86, 908
SmoI	CTYRAG	2 cut(s)	86, 908
Sse9I	AATT	3 cut(s)	474, 551, 584
SsiI	CCGC	5 cut(s)	171, 353, 361, 382, 640
SspMI	CTAG	4 cut(s)	26, 548, 608, 749
TaaI	ACNGT	5 cut(s)	100, 203, 451, 577, 599
TaiI	ACGT	3 cut(s)	84, 309, 324
TaqI	TCGA	2 cut(s)	38, 66
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	474, 551, 584
TatI	WGTACW	2 cut(s)	558, 688
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	2 cut(s)	696, 952
Tru9I	TTAA	2 cut(s)	696, 952
TscAI	CASTG	4 cut(s)	407, 604, 634, 750
TseFI	GTSAC	3 cut(s)	289, 377, 413
TseI	GCWGC	2 cut(s)	513, 811
Tsp45I	GTSAC	3 cut(s)	289, 377, 413
TspDTI	ATGAA	2 cut(s)	115, 807
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	4 cut(s)	407, 604, 634, 750
XagI	CCTNNNNNAGG	1 cut(s)	849
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 499
XspI	CTAG	4 cut(s)	26, 548, 608, 749
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.