Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

56424349 .. 56426394

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACTCCATTGATGTGCTCATGCTAGGCCCCATGCCCGCCCCTTATTTAGAACAAGAACTCGATAAGCGCTTCAACGTCCTCAAGCTCTGGACTGTCCCTAACAAAAACCAGTTCATCAAGGACAACTCCACTTCCATCCGAGCCATCGTCGGCCACGGCGGCGTTGGAGCTGATGCCCAACTGATCGACAGTCTGCCCAAGTTGGAGATCATCTCCAGCTTCAGCGTTGGGACGGACAAGATTGATTTGAAGAAATGCAAGGAAAAGGGTATTCGGGTCACCAACACACCCGACGTGTTGACCGATGACGTAGCCGACATCGCCATCGGGTTGGCGCTGGCGGTCACGCGGAGGCTGTGTGAGAGTGACCGCTATGTCAGGAGCGGGCTGTGGAAGAAGGGTGACTACAAGTTGACGACAAAGTTCACTGGAAAAACAGTTGGTATCATCGGTTTGGGAAGAATCGGCAAAGCAGTTGCCAAGAGAGCTGAGGCTTTTAGCTGCCCCATTGCCTACTTCTCCAGAACAGAAAAACCAGAATTGAAGTACAAGTATTATCCTACTGTTGTGGAATTGGCCTCCAACTGTGATGTTCTAGTTGTTGCGTGCCCACTCACTGAAGAAACCCGCCACATTATCAATCGTGAAGTCATTGATGCATTGGGACCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCATCATGTTGATGAGCCTGAGTTAGTAGCTGCACTGCTAGAAGGCCGATTAGGTGGAGCTGGCCTCGATGTGTATCAAAATGAACCAGAAGTACCGGAGCAGCTGTTTGGTCTTGAAAATGTGGTGCTCTTGCCTCATGCAGGAAGTGGTACTACTGAAACTCGCAATGCAATGGCTGACCTTGTTATTGGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGCTGACCCCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

315

Amino Acids

34.24

Weight (kDa)

6.12

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	14 - 313	9.8e-24	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	110 - 282	3.6e-54	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	387
AccII	CGCG	1 cut(s)	352
AciI	CCGC	7 cut(s)	39, 162, 344, 352, 373, 387, 631
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	208, 642
AfaI	GTAC	3 cut(s)	551, 795, 853
AfeI	AGCGCT	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	76, 253, 547, 818, 916
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	8 cut(s)	88, 173, 222, 491, 504, 731, 761, 805
AluI	AGCT	8 cut(s)	88, 173, 222, 491, 504, 731, 761, 805
Alw21I	GWGCWC	2 cut(s)	21, 831
Aor51HI	AGCGCT	1 cut(s)	71
AoxI	GGCC	5 cut(s)	28, 154, 579, 745, 763
ApeKI	GCWGC	3 cut(s)	504, 731, 802
AspLEI	GCGC	2 cut(s)	72, 340
AspS9I	GGNCC	2 cut(s)	29, 668
AsuHPI	GGTGA	2 cut(s)	274, 416
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	4 cut(s)	392, 424, 838, 870
Bbv12I	GWGCWC	2 cut(s)	21, 831
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	491, 718, 814
BccI	CCATC	3 cut(s)	146, 155, 335
BceAI	ACGGC	1 cut(s)	175
BfaI	CTAG	3 cut(s)	26, 599, 740
BfoI	RGCGCY	2 cut(s)	73, 341
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	4 cut(s)	163, 505, 732, 803
BlsI	GCNGC	4 cut(s)	164, 506, 733, 804
Bme18I	GGWCC	1 cut(s)	668
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	29, 668
BmiI	GGNNCC	2 cut(s)	31, 669
BmsI	GCATC	2 cut(s)	166, 649
BplI	GAGNNNNNCTC	4 cut(s)	200, 232, 750, 782
BpmI	CTGGAG	2 cut(s)	202, 508
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	68, 920
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	4 cut(s)	346, 376, 791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	2 cut(s)	112, 436
Bse3DI	GCAATG	4 cut(s)	510, 874, 879, 923
Bse8I	GATNNNNATC	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMI	GCAATG	4 cut(s)	510, 874, 879, 923
BseMII	CTCAG	2 cut(s)	483, 711
BseNI	ACTGG	2 cut(s)	112, 436
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	3 cut(s)	491, 718, 814
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	5 cut(s)	30, 156, 581, 747, 765
BsiHKAI	GWGCWC	2 cut(s)	21, 831
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	3 cut(s)	83, 247, 681
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmFI	GGGAC	3 cut(s)	83, 247, 681
BsnI	GGCC	5 cut(s)	30, 156, 581, 747, 765
Bsp1286I	GDGCHC	3 cut(s)	21, 614, 831
Bsp143I	GATC	2 cut(s)	186, 210
BspACI	CCGC	7 cut(s)	39, 162, 344, 352, 373, 387, 631
BspANI	GGCC	5 cut(s)	30, 156, 581, 747, 765
BspCNI	CTCAG	2 cut(s)	484, 712
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	31, 669
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	4 cut(s)	510, 874, 879, 923
BsrI	ACTGG	2 cut(s)	112, 436
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	186, 210
Bst4CI	ACNGT	5 cut(s)	97, 194, 442, 568, 590
BstC8I	GCNNGC	5 cut(s)	39, 342, 389, 610, 763
BstDEI	CTNAG	2 cut(s)	492, 720
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	2 cut(s)	73, 341
BstHHI	GCGC	2 cut(s)	72, 340
BstKTI	GATC	2 cut(s)	189, 213
BstMBI	GATC	2 cut(s)	186, 210
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 323, 488
BstPI	GGTNACC	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	614
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	491, 718, 814
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	30, 156, 581, 747, 765
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	3 cut(s)	429, 618, 734
Cac8I	GCNNGC	5 cut(s)	39, 342, 389, 610, 763
CfoI	GCGC	2 cut(s)	72, 340
Cfr13I	GGNCC	2 cut(s)	29, 668
Csp6I	GTAC	3 cut(s)	550, 794, 852
CviAII	CATG	4 cut(s)	22, 34, 707, 839
CviQI	GTAC	3 cut(s)	550, 794, 852
DdeI	CTNAG	2 cut(s)	492, 720
DpnI	GATC	2 cut(s)	188, 212
DpnII	GATC	2 cut(s)	186, 210
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	668
Eco47III	AGCGCT	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	208, 642
Eco91I	GGTNACC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	664
FaeI	CATG	4 cut(s)	25, 37, 710, 842
FaiI	YATR	5 cut(s)	23, 35, 378, 708, 840
FaqI	GGGAC	3 cut(s)	83, 247, 681
FatI	CATG	4 cut(s)	21, 33, 706, 838
FauI	CCCGC	3 cut(s)	46, 380, 638
Fnu4HI	GCNGC	4 cut(s)	163, 505, 732, 803
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	163, 505, 732, 803
FspBI	CTAG	3 cut(s)	26, 599, 740
GlaI	GCGC	2 cut(s)	71, 339
GluI	GCNGC	4 cut(s)	163, 505, 732, 803
GsuI	CTGGAG	2 cut(s)	202, 508
HaeII	RGCGCY	2 cut(s)	73, 341
HaeIII	GGCC	5 cut(s)	30, 156, 581, 747, 765
HapII	CCGG	1 cut(s)	797
HhaI	GCGC	2 cut(s)	72, 340
Hin1II	CATG	4 cut(s)	25, 37, 710, 842
Hin6I	GCGC	2 cut(s)	70, 338
HinP1I	GCGC	2 cut(s)	70, 338
HincII	GTYRAC	2 cut(s)	303, 417
HindII	GTYRAC	2 cut(s)	303, 417
HinfI	GANTC	3 cut(s)	5, 465, 895
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	2 cut(s)	274, 416
Hpy166II	GTNNAC	3 cut(s)	303, 417, 429
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	7 cut(s)	91, 382, 525, 647, 815, 899, 913
Hpy8I	GTNNAC	3 cut(s)	303, 417, 429
Hpy99I	CGWCG	2 cut(s)	155, 299
HpyAV	CCTTC	2 cut(s)	394, 737
HpyCH4III	ACNGT	5 cut(s)	97, 194, 442, 568, 590
HpyCH4IV	ACGT	3 cut(s)	78, 297, 312
HpyCH4V	TGCA	5 cut(s)	261, 662, 734, 842, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 323, 488
HpyF3I	CTNAG	2 cut(s)	492, 720
HpySE526I	ACGT	3 cut(s)	78, 297, 312
Hsp92II	CATG	4 cut(s)	25, 37, 710, 842
HspAI	GCGC	2 cut(s)	70, 338
Kzo9I	GATC	2 cut(s)	186, 210
LmnI	GCTCC	4 cut(s)	170, 384, 758, 799
Lsp1109I	GCAGC	3 cut(s)	491, 718, 814
LweI	GCATC	2 cut(s)	166, 649
MaeI	CTAG	3 cut(s)	26, 599, 740
MaeII	ACGT	3 cut(s)	78, 297, 312
MaeIII	GTNAC	4 cut(s)	280, 346, 368, 404
MalI	GATC	2 cut(s)	188, 212
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	2 cut(s)	186, 210
MboII	GAAGA	4 cut(s)	265, 409, 474, 635
MhlI	GDGCHC	3 cut(s)	21, 614, 831
MluCI	AATT	2 cut(s)	542, 575
MmeI	TCCRAC	3 cut(s)	148, 186, 609
MnlI	CCTC	8 cut(s)	92, 348, 487, 592, 690, 776, 846, 895
Mph1103I	ATGCAT	1 cut(s)	664
MseI	TTAA	2 cut(s)	687, 943
MslI	CAYNNNNRTG	2 cut(s)	14, 711
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	162, 323, 488
NdeII	GATC	2 cut(s)	186, 210
NlaIII	CATG	4 cut(s)	25, 37, 710, 842
NlaIV	GGNNCC	2 cut(s)	31, 669
NmuCI	GTSAC	4 cut(s)	280, 346, 368, 404
NsiI	ATGCAT	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	465, 895
PkrI	GCNGC	4 cut(s)	164, 506, 733, 804
PspEI	GGTNACC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	31, 669
PspPI	GGNCC	2 cut(s)	29, 668
PsrI	GAACNNNNNNTAC	2 cut(s)	777, 809
PvuII	CAGCTG	1 cut(s)	805
RsaI	GTAC	3 cut(s)	551, 795, 853
RsaNI	GTAC	3 cut(s)	550, 794, 852
RseI	CAYNNNNRTG	2 cut(s)	14, 711
SaqAI	TTAA	2 cut(s)	687, 943
SatI	GCNGC	4 cut(s)	163, 505, 732, 803
Sau3AI	GATC	2 cut(s)	186, 210
Sau96I	GGNCC	2 cut(s)	29, 668
SduI	GDGCHC	3 cut(s)	21, 614, 831
SfaNI	GCATC	2 cut(s)	166, 649
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	14, 711
SmlI	CTYRAG	2 cut(s)	83, 899
SmoI	CTYRAG	2 cut(s)	83, 899
Sse9I	AATT	2 cut(s)	542, 575
SsiI	CCGC	7 cut(s)	39, 162, 344, 352, 373, 387, 631
SspMI	CTAG	3 cut(s)	26, 599, 740
TaaI	ACNGT	5 cut(s)	97, 194, 442, 568, 590
TaiI	ACGT	3 cut(s)	81, 300, 315
TaqI	TCGA	3 cut(s)	63, 189, 768
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	2 cut(s)	542, 575
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	465, 895
Tru1I	TTAA	2 cut(s)	687, 943
Tru9I	TTAA	2 cut(s)	687, 943
TscAI	CASTG	3 cut(s)	436, 625, 741
TseFI	GTSAC	4 cut(s)	280, 346, 368, 404
TseI	GCWGC	3 cut(s)	504, 731, 802
Tsp45I	GTSAC	4 cut(s)	280, 346, 368, 404
TspDTI	ATGAA	2 cut(s)	106, 798
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	436, 625, 741
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XspI	CTAG	3 cut(s)	26, 599, 740
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.