Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002512

Physical Location & Seq

Genomic Coordinates Reverse (-)

24823711 .. 24826034

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGACTCCATAGATGTCCTCTACCCCTCCCCCGTATGCTCCTATTTAGAACAAGAACTCGATAAGCGCTTCAACGTCCTCAAGCTCTGGACTGCCCCCAACAAAACCCAGTTCATCAAGGACAACTCCACCTCTATCCGCGCCATCGTCGGCCACGGCGGCGTCGGAGCCGATGCCGAGCTTATCGAGAGTCTACCCAAGTTGGAGATCATCTCCAGCTTCAGCGTTGGGATGGACAAAGTCGACTTGAAGAAATGCAAGGAGAAGGGTGTGAGGGTCACCAACACCCCCGACGTGTTGACCGATGACGTGGCTGATATTGCTATTGGGTTGGCGCTGGCGGTGATGCGGAGGCTGTGCGAGAGTGATCGGTATGTGAGGAGCGGGATGTGGAAGAAGGGTGACTACAAGTTGACCACAAAGTTCACCGGAAAAACAGTTGGTATCATCGGTTTGGGAAGAATCGGCAAAGCAATTGCCAAGAGAGCTGAGGCTTTCAGTTGCCCCATTGCCTACTTTTCCAGAACAGAAAAACCAGAATTGAAGTACAAGTATTATCCTACTGTTGTGGAACTGGCCTCCAAATGTGATGTTCTAGTTGTTGCATGCGCACTTACTGAAGAAACCCGCCATATTATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGAAGGGGTCATCATGTTGATGAGCCTGAGTTGGTATCTGCACTGCTAGAAGGCCGATTAGGTGGTGCTGGCCTTGATGTGTATCAAAATGAACCAGAAGTGCCAGAGCAGTTGTTTGGGCTTGAAAATGTGGTGCTCTTGCCTCATGCAGGAAGTGGCACTACAGAAACTCGTTGTGCAATGGCTGACCTTGTTATTGCGAATCTTGAGGCTCACTTTTTGAACAAACCATTGCTGACACCTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

314

Amino Acids

34.22

Weight (kDa)

6.13

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	12 - 312	8.6e-24	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	109 - 281	6.8e-53	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79870 AT1G79870
fragaria_vesca	FvH4_6g31711 FvH4_6g31720 FvH4_6g31721
malus_domestica	MD09G1209700.v1.1 MD09G1209800.v1.1 MD17G1191700.v1.1
prunus_persica	Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067700_v2.0.a1 Prupe.3G067800_v2.0.a1
pyrus_communis	pycom09g12600 pycom09g12630 pycom17g19870
rosa_chinensis	RchiOBHm_Chr2g0138801 RchiOBHm_Chr2g0138891 RchiOBHm_Chr2g0138911
rosa_laevigata	RLG00000019761 RLG00000019763 RLG00000019764
rosa_multiflora	Rmu_co8474001.1_g000001 Rmu_sc0010783.1_g000009 Rmu_sc0011444.1_g000002 Rmu_sc0016387.1_g000002 Rmu_sc0017407.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105920 Rroxscaffold_2G00105950
rosa_rugosa	Rorug02G0352600 Rorug02G0352800 Rorug02G0352900
rosa_samantha	Rh2AG402500 Rh2AG403000 Rh2BG411600 Rh2CG388600 Rh2DG422700 Rh2DG423100 Rh2DG423200
rosa_wichuraiana	Rw2G032720 Rw2G032780 Rw2G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	2 cut(s)	193, 243
AccII	CGCG	1 cut(s)	141
AciI	CCGC	6 cut(s)	139, 159, 341, 349, 384, 628
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	205, 639
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	548
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	73, 250, 544, 815, 913
AjiI	CACGTC	2 cut(s)	295, 310
AluBI	AGCT	4 cut(s)	85, 181, 219, 488
AluI	AGCT	4 cut(s)	85, 181, 219, 488
Alw21I	GWGCWC	1 cut(s)	828
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	5 cut(s)	151, 576, 665, 742, 760
AspLEI	GCGC	4 cut(s)	69, 143, 337, 611
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	4 cut(s)	271, 355, 413, 418
BarI	GAAGNNNNNNTAC	4 cut(s)	389, 421, 835, 867
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	152, 226
BceAI	ACGGC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	596, 737
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	2 cut(s)	70, 338
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BmgBI	CACGTC	2 cut(s)	295, 310
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	169, 666
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	163, 336, 646
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	65, 917
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	2 cut(s)	109, 579
Bse3DI	GCAATG	3 cut(s)	507, 876, 920
Bse8I	GATNNNNATC	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	237, 393
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMI	GCAATG	3 cut(s)	507, 876, 920
BseMII	CTCAG	2 cut(s)	480, 708
BseNI	ACTGG	2 cut(s)	109, 579
BseRI	GAGGAG	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	5 cut(s)	153, 578, 667, 744, 762
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	839
BsnI	GGCC	5 cut(s)	153, 578, 667, 744, 762
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	2 cut(s)	207, 367
BspACI	CCGC	6 cut(s)	139, 159, 341, 349, 384, 628
BspANI	GGCC	5 cut(s)	153, 578, 667, 744, 762
BspCNI	CTCAG	2 cut(s)	481, 709
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	169, 666
BsrBI	CCGCTC	1 cut(s)	384
BsrDI	GCAATG	3 cut(s)	507, 876, 920
BsrI	ACTGG	2 cut(s)	109, 579
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	207, 367
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	439, 565
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	339, 607, 760
BstDEI	CTNAG	2 cut(s)	489, 717
BstDSI	CCRYGG	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	2 cut(s)	237, 393
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	70, 338
BstHHI	GCGC	4 cut(s)	69, 143, 337, 611
BstKTI	GATC	2 cut(s)	210, 370
BstMBI	GATC	2 cut(s)	207, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 320, 485
BstNSI	RCATGY	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	141
BsuRI	GGCC	5 cut(s)	153, 578, 667, 744, 762
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	2 cut(s)	295, 310
BtsCI	GGATG	2 cut(s)	237, 393
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	339, 607, 760
CfoI	GCGC	4 cut(s)	69, 143, 337, 611
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	3 cut(s)	606, 704, 836
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	489, 717
DpnI	GATC	2 cut(s)	209, 369
DpnII	GATC	2 cut(s)	207, 367
EaeI	YGGCCR	1 cut(s)	151
Eco47III	AGCGCT	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	205, 639
Eco91I	GGTNACC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoO65I	GGTNACC	1 cut(s)	277
FaeI	CATG	3 cut(s)	609, 707, 839
FaiI	YATR	7 cut(s)	11, 37, 375, 607, 633, 705, 837
FatI	CATG	3 cut(s)	605, 703, 835
FauI	CCCGC	2 cut(s)	377, 635
FblI	GTMKAC	2 cut(s)	193, 243
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	244, 400
Fsp4HI	GCNGC	1 cut(s)	160
FspAI	RTGCGCAY	1 cut(s)	610
FspBI	CTAG	2 cut(s)	596, 737
FspI	TGCGCA	1 cut(s)	610
GlaI	GCGC	4 cut(s)	68, 142, 336, 610
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	199
HaeII	RGCGCY	2 cut(s)	70, 338
HaeIII	GGCC	5 cut(s)	153, 578, 667, 744, 762
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	4 cut(s)	69, 143, 337, 611
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	609, 707, 839
Hin6I	GCGC	4 cut(s)	67, 141, 335, 609
HinP1I	GCGC	4 cut(s)	67, 141, 335, 609
HincII	GTYRAC	3 cut(s)	244, 300, 414
HindII	GTYRAC	3 cut(s)	244, 300, 414
HinfI	GANTC	4 cut(s)	5, 190, 462, 892
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	4 cut(s)	271, 355, 413, 418
Hpy166II	GTNNAC	5 cut(s)	194, 244, 300, 414, 426
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	5 cut(s)	88, 187, 522, 644, 896
Hpy8I	GTNNAC	5 cut(s)	194, 244, 300, 414, 426
Hpy99I	CGWCG	3 cut(s)	152, 167, 296
HpyAV	CCTTC	4 cut(s)	259, 391, 687, 734
HpyCH4III	ACNGT	2 cut(s)	439, 565
HpyCH4IV	ACGT	3 cut(s)	75, 294, 309
HpyCH4V	TGCA	5 cut(s)	258, 605, 731, 839, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 320, 485
HpyF3I	CTNAG	2 cut(s)	489, 717
HpySE526I	ACGT	3 cut(s)	75, 294, 309
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	609, 707, 839
HspAI	GCGC	4 cut(s)	67, 141, 335, 609
Kzo9I	GATC	2 cut(s)	207, 367
LmnI	GCTCC	3 cut(s)	44, 167, 381
LweI	GCATC	3 cut(s)	163, 336, 646
MaeI	CTAG	2 cut(s)	596, 737
MaeII	ACGT	3 cut(s)	75, 294, 309
MaeIII	GTNAC	2 cut(s)	277, 401
MalI	GATC	2 cut(s)	209, 369
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	2 cut(s)	207, 367
MboII	GAAGA	4 cut(s)	262, 406, 471, 632
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	2 cut(s)	474, 539
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	145, 183
MseI	TTAA	2 cut(s)	684, 940
MslI	CAYNNNNRTG	1 cut(s)	708
MspI	CCGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	159, 320, 485
NdeII	GATC	2 cut(s)	207, 367
NlaIII	CATG	3 cut(s)	609, 707, 839
NlaIV	GGNNCC	2 cut(s)	169, 666
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	277, 401
NsbI	TGCGCA	1 cut(s)	610
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	462, 892
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	169, 666
PspPI	GGNCC	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	708
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	684, 940
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	207, 367
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	3 cut(s)	163, 336, 646
SfcI	CTRYAG	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	2 cut(s)	80, 896
SmoI	CTYRAG	2 cut(s)	80, 896
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	2 cut(s)	474, 539
SsiI	CCGC	6 cut(s)	139, 159, 341, 349, 384, 628
SspMI	CTAG	2 cut(s)	596, 737
TaaI	ACNGT	2 cut(s)	439, 565
TaiI	ACGT	3 cut(s)	78, 297, 312
TaqI	TCGA	3 cut(s)	60, 186, 243
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	474, 539
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	462, 892
Tru1I	TTAA	2 cut(s)	684, 940
Tru9I	TTAA	2 cut(s)	684, 940
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	2 cut(s)	277, 401
Tsp45I	GTSAC	2 cut(s)	277, 401
TspDTI	ATGAA	2 cut(s)	103, 795
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	837
XceI	RCATGY	1 cut(s)	609
XmiI	GTMKAC	2 cut(s)	193, 243
XspI	CTAG	2 cut(s)	596, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.