FvH4_6g33520

cadmium zinc-transporting ATPase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26534713 .. 26539400
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33520.t2

Sequence Viewer

Length: 1515 bp
ATGAATCAAGCAAGCCTAGAATCAAGTGTCAAGGTGCATGTGGAGAATTACAAGAAAAAATGGCCTAGTCCATATGCAATTGCTAGTGGTGTATTGCTACTCCTATCACTTCTGAAATATGTATACAGCCCATTTCAGTGGTTGGCCTTAGGAGCAGTAGCTGCTGGTATTTTTCCGATTTTGATGAAATGTGTAGCTTCAATTCGGAATCTTAAGATTGACATCAACATTCTCGTCATCATTGCGGTGATTGGAACAATTGCTATGAGTGATTATGTGGAAGCTGGCACTATAGTCTTCCTGTTCACCATTGCAGAGTGGCTTGAATCCAGGTCCCGTCATAAGGCAAATGCAGTGATGTCATCTTTGATGAGCATGGCCCCCCAAAAAGCTGTCCTAGCAGCAACAGGAGATGTTGTGGATGTTGATATGGTTGAGTTGAATACAATTCTCGCTGTTAAGGCTGGTGAAGTTATACCAATTGATGGAATTGTTGTGGATGGTGAAGCTGAAGTGGACGAGAAGACGCTAACTGGAGAGTCATATCCAGTTGCAAAACTACAGGGCTCCACTGTCTGGGCTGGCACTGTCAATCTCAATGGTTACATTAGTGTCAAAACTACAGCCTTAGCTGAAGATTGTGTGGTTGCTGAAATGGCTAAACTTGTGGAAGAGGCCCAGAACAGAAAATCCAAAACTCAAAGATTTGTTGATAAATTTGCCAAGTTCTACACTCCAGCGGTCCTATTTGTATCTGTTTCTGTTGCGGTGATTCCAGCTGCCTTACATGTTCCTAATTGGAGCCAATGGTTTCACTTAGCTTTGGTAGTTTTAGTGAGTGCTTGTCCCTGTGCTCTCATCCTCTCTACACCTGTTGTAACTTTCTGCACACTTACGAATGCTGCAACATCTGGCCTTCTGATCAAAGGGGGTGACTACCTTGAAATTCTAGGAAAAATCAAGACCATGTGTTTTGACAAAACTGGTACAATAACAAGTGGGGAGTTTTTCGTGATGGATTTTCATTCTCTTCGCAAAGACATCAGCTTGAACACATTGCTTTACTGGGTTGCAAGCATTGAGAGGAAGTCGAGTCATCCAATGGCAGATGCACTGGTTGACTGTGCAAGATTTCATTCAATTGAGCCAAAGCCTGAAAACGTGGAGGACTTTCAAAGTTTTCCAGGCCAAGGCATTCGTGGAAGAATTGATGGACAAGATATTTACATTGGAAACAGAAAAATTGCTTTGAGAACTGCTTCTGGAACAGTTCCAACCATTGAAGAGAGTGGAAATGGTGGGAAGACGATTGGATACATATACTGTGGAGGAACCCCTGCAGGAATCTTTGCACTATCTGATGCTTGTCGATTAGGGGCTGCAGAGGCTGTACGTGAGCTGAAGGAAATAGGCATTAAAACAGCTCTTCTCACAGGAGATAGTCATACTGCAGCTATTCATACAAATGAGCAGTTAACCACAAGTGCGTTAAGCACCTTTTGCTGCACCGTTTGA

Protein Analysis

505

Amino Acids

54.23

Weight (kDa)

6.04

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 219 - 306 4.8e-21 P-type ATPase actuator domain
Hydrolase PF00702 402 - 570 5.4e-15 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 485, 576
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 245, 740, 767
AcsI RAATTY 2 cut(s) 716, 945
AcuI CTGAAG 3 cut(s) 531, 654, 1421
AfaI GTAC 2 cut(s) 988, 1392
AfiI CCNNNNNNNGG 4 cut(s) 343, 485, 576, 1190
AflII CTTAAG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 787
AgsI TTSAA 8 cut(s) 201, 326, 442, 944, 1051, 1140, 1175, 1283
AjnI CCWGG 2 cut(s) 329, 1183
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
Alw21I GWGCWC 1 cut(s) 856
AlwNI CAGNNNCTG 2 cut(s) 161, 1388
AoxI GGCC 6 cut(s) 62, 144, 378, 675, 913, 1186
ApeKI GCWGC 7 cut(s) 161, 401, 779, 902, 1379, 1451, 1503
ApoI RAATTY 2 cut(s) 716, 945
Asp700I GAANNNNTTC 1 cut(s) 1258
AspS9I GGNCC 4 cut(s) 333, 379, 676, 742
AsuHPI GGTGA 6 cut(s) 259, 298, 479, 515, 781, 944
AvaII GGWCC 2 cut(s) 333, 742
AxyI CCTNAGG 1 cut(s) 148
BanII GRGCYC 1 cut(s) 569
BbsI GAAGAC 3 cut(s) 289, 530, 1310
Bbv12I GWGCWC 1 cut(s) 856
BbvI GCAGC 7 cut(s) 148, 413, 766, 889, 1366, 1463, 1490
BccI CCATC 4 cut(s) 479, 494, 1009, 1205
BciT130I CCWGG 2 cut(s) 331, 1185
BciVI GTATCC 1 cut(s) 1307
BclI TGATCA 1 cut(s) 921
BfaI CTAG 5 cut(s) 17, 66, 84, 398, 950
BfmI CTRYAG 6 cut(s) 291, 560, 621, 1338, 1380, 1449
BfrI CTTAAG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 1307
BisI GCNGC 7 cut(s) 162, 402, 780, 903, 1380, 1452, 1504
BlsI GCNGC 7 cut(s) 163, 403, 781, 904, 1381, 1453, 1505
Bme1390I CCNGG 2 cut(s) 331, 1185
Bme18I GGWCC 2 cut(s) 333, 742
BmgT120I GGNCC 4 cut(s) 333, 379, 676, 742
BmiI GGNNCC 5 cut(s) 335, 381, 568, 803, 1333
BmrFI CCNGG 2 cut(s) 331, 1185
BmrI ACTGGG 1 cut(s) 1075
BmsI GCATC 2 cut(s) 1099, 1351
BmuI ACTGGG 1 cut(s) 1075
BpiI GAAGAC 3 cut(s) 289, 530, 1310
BpmI CTGGAG 2 cut(s) 555, 720
Bpu10I CCTNAGC 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 1394
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 485, 576, 1190
Bse1I ACTGG 5 cut(s) 538, 548, 988, 1070, 1119
Bse21I CCTNAGG 1 cut(s) 148
Bse3DI GCAATG 3 cut(s) 240, 309, 1055
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 2 cut(s) 331, 1185
BseDI CCNNGG 1 cut(s) 1189
BseGI GGATG 4 cut(s) 427, 505, 858, 1096
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 4 cut(s) 343, 485, 576, 1190
BseMI GCAATG 3 cut(s) 240, 309, 1055
BseNI ACTGG 5 cut(s) 538, 548, 988, 1070, 1119
BseXI GCAGC 7 cut(s) 148, 413, 766, 889, 1366, 1463, 1490
BsgI GTGCAG 2 cut(s) 871, 1489
BshFI GGCC 6 cut(s) 64, 146, 380, 677, 915, 1188
BsiHKAI GWGCWC 1 cut(s) 856
BslFI GGGAC 2 cut(s) 319, 831
BslI CCNNNNNNNGG 4 cut(s) 343, 485, 576, 1190
BsmFI GGGAC 2 cut(s) 319, 831
BsmI GAATGC 2 cut(s) 904, 1194
BsnI GGCC 6 cut(s) 64, 146, 380, 677, 915, 1188
Bsp1286I GDGCHC 2 cut(s) 569, 856
Bsp143I GATC 1 cut(s) 921
BspACI CCGC 3 cut(s) 245, 740, 767
BspANI GGCC 6 cut(s) 64, 146, 380, 677, 915, 1188
BspLI GGNNCC 5 cut(s) 335, 381, 568, 803, 1333
BspMAI CTGCAG 3 cut(s) 1342, 1384, 1453
BspQI GCTCTTC 1 cut(s) 1431
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 3 cut(s) 240, 309, 1055
BsrI ACTGG 5 cut(s) 538, 548, 988, 1070, 1119
BssECI CCNNGG 1 cut(s) 1189
BssMI GATC 1 cut(s) 921
BssNAI GTATAC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 1189
Bst1107I GTATAC 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 331, 1185
Bst4CI ACNGT 6 cut(s) 574, 589, 1124, 1270, 1325, 1510
Bst6I CTCTTC 4 cut(s) 666, 1035, 1278, 1431
BstAFI CTTAAG 1 cut(s) 212
BstAPI GCANNNNNTGC 2 cut(s) 161, 1500
BstBAI YACGTR 1 cut(s) 1394
BstC8I GCNNGC 4 cut(s) 13, 286, 583, 1075
BstDEI CTNAG 3 cut(s) 148, 628, 817
BstF5I GGATG 4 cut(s) 427, 505, 858, 1096
BstKTI GATC 1 cut(s) 924
BstMBI GATC 1 cut(s) 921
BstMWI GCNNNNNNNGC 7 cut(s) 152, 161, 398, 461, 656, 1385, 1500
BstNI CCWGG 2 cut(s) 331, 1185
BstNSI RCATGY 2 cut(s) 41, 791
BstSCI CCNGG 2 cut(s) 329, 1183
BstSFI CTRYAG 6 cut(s) 291, 560, 621, 1338, 1380, 1449
BstV1I GCAGC 7 cut(s) 148, 413, 766, 889, 1366, 1463, 1490
BstV2I GAAGAC 3 cut(s) 289, 530, 1310
BstXI CCANNNNNNTGG 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 1307
BsuRI GGCC 6 cut(s) 64, 146, 380, 677, 915, 1188
BtsCI GGATG 4 cut(s) 427, 505, 858, 1096
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 5 cut(s) 143, 360, 570, 585, 1112
Cac8I GCNNGC 4 cut(s) 13, 286, 583, 1075
CaiI CAGNNNCTG 2 cut(s) 161, 1388
Cfr13I GGNCC 4 cut(s) 333, 379, 676, 742
CseI GACGC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 987, 1391
CviAII CATG 4 cut(s) 38, 376, 788, 967
CviQI GTAC 2 cut(s) 987, 1391
DdeI CTNAG 3 cut(s) 148, 628, 817
DpnI GATC 1 cut(s) 923
DpnII GATC 1 cut(s) 921
Eam1104I CTCTTC 4 cut(s) 666, 1035, 1278, 1431
EarI CTCTTC 4 cut(s) 666, 1035, 1278, 1431
Eco130I CCWWGG 1 cut(s) 1189
Eco24I GRGCYC 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 333, 742
Eco57I CTGAAG 3 cut(s) 531, 654, 1421
Eco81I CCTNAGG 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 329, 1183
EcoT14I CCWWGG 1 cut(s) 1189
EcoT38I GRGCYC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 1189
FaeI CATG 4 cut(s) 41, 379, 791, 970
FaqI GGGAC 2 cut(s) 319, 831
FatI CATG 4 cut(s) 37, 375, 787, 966
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 921
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 7 cut(s) 162, 402, 780, 903, 1380, 1452, 1504
FokI GGATG 4 cut(s) 434, 512, 845, 1083
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 7 cut(s) 162, 402, 780, 903, 1380, 1452, 1504
FspBI CTAG 5 cut(s) 17, 66, 84, 398, 950
GluI GCNGC 7 cut(s) 162, 402, 780, 903, 1380, 1452, 1504
GsuI CTGGAG 2 cut(s) 555, 720
HaeIII GGCC 6 cut(s) 64, 146, 380, 677, 915, 1188
HgaI GACGC 1 cut(s) 535
Hin1II CATG 4 cut(s) 41, 379, 791, 970
HincII GTYRAC 2 cut(s) 1120, 1476
HindII GTYRAC 2 cut(s) 1120, 1476
HinfI GANTC 8 cut(s) 4, 20, 208, 326, 539, 772, 1093, 1344
HpaI GTTAAC 1 cut(s) 1476
HphI GGTGA 6 cut(s) 259, 298, 479, 515, 781, 944
Hpy166II GTNNAC 5 cut(s) 124, 306, 517, 1120, 1476
Hpy188I TCNGA 5 cut(s) 114, 177, 207, 921, 1360
Hpy188III TCNNGA 3 cut(s) 961, 1012, 1263
Hpy8I GTNNAC 5 cut(s) 124, 306, 517, 1120, 1476
HpyAV CCTTC 2 cut(s) 926, 1396
HpyCH4III ACNGT 6 cut(s) 574, 589, 1124, 1270, 1325, 1510
HpyCH4IV ACGT 2 cut(s) 1161, 1393
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 161, 398, 461, 656, 1385, 1500
HpyF3I CTNAG 3 cut(s) 148, 628, 817
HpySE526I ACGT 2 cut(s) 1161, 1393
Hsp92II CATG 4 cut(s) 41, 379, 791, 970
Ksp22I TGATCA 1 cut(s) 921
KspAI GTTAAC 1 cut(s) 1476
Kzo9I GATC 1 cut(s) 921
LguI GCTCTTC 1 cut(s) 1431
LmnI GCTCC 3 cut(s) 152, 572, 801
Lsp1109I GCAGC 7 cut(s) 148, 413, 766, 889, 1366, 1463, 1490
LweI GCATC 2 cut(s) 1099, 1351
MaeI CTAG 5 cut(s) 17, 66, 84, 398, 950
MaeII ACGT 2 cut(s) 1161, 1393
MaeIII GTNAC 3 cut(s) 602, 877, 932
MalI GATC 1 cut(s) 923
MboI GATC 1 cut(s) 921
MboII GAAGA 9 cut(s) 289, 535, 647, 683, 1022, 1215, 1295, 1315, 1418
MfeI CAATTG 4 cut(s) 78, 258, 480, 1140
MhlI GDGCHC 2 cut(s) 569, 856
MlyI GAGTC 2 cut(s) 548, 1102
MmeI TCCRAC 1 cut(s) 1298
MnlI CCTC 6 cut(s) 667, 872, 1077, 1159, 1322, 1378
MroXI GAANNNNTTC 1 cut(s) 1258
MseI TTAA 5 cut(s) 213, 459, 1416, 1475, 1490
MslI CAYNNNNRTG 3 cut(s) 136, 245, 1464
MspA1I CMGCKG 2 cut(s) 740, 779
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 331, 1185
MunI CAATTG 4 cut(s) 78, 258, 480, 1140
Mva1269I GAATGC 2 cut(s) 904, 1194
MvaI CCWGG 2 cut(s) 331, 1185
MwoI GCNNNNNNNGC 7 cut(s) 152, 161, 398, 461, 656, 1385, 1500
NdeI CATATG 1 cut(s) 73
NdeII GATC 1 cut(s) 921
NlaIII CATG 4 cut(s) 41, 379, 791, 970
NlaIV GGNNCC 5 cut(s) 335, 381, 568, 803, 1333
NmuCI GTSAC 1 cut(s) 932
NspI RCATGY 2 cut(s) 41, 791
PciI ACATGT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 1431
PctI GAATGC 2 cut(s) 904, 1194
PdmI GAANNNNTTC 1 cut(s) 1258
PfeI GAWTC 6 cut(s) 4, 20, 208, 326, 772, 1344
PflMI CCANNNNNTGG 2 cut(s) 485, 576
PkrI GCNGC 7 cut(s) 163, 403, 781, 904, 1381, 1453, 1505
PleI GAGTC 2 cut(s) 547, 1101
PpsI GAGTC 2 cut(s) 547, 1101
Ppu21I YACGTR 1 cut(s) 1394
PpuMI RGGWCCY 1 cut(s) 333
PscI ACATGT 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 329, 1183
PspGI CCWGG 2 cut(s) 329, 1183
PspN4I GGNNCC 5 cut(s) 335, 381, 568, 803, 1333
PspPI GGNCC 4 cut(s) 333, 379, 676, 742
PspPPI RGGWCCY 1 cut(s) 333
PstI CTGCAG 3 cut(s) 1342, 1384, 1453
PstNI CAGNNNCTG 2 cut(s) 161, 1388
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 988, 1392
RsaNI GTAC 2 cut(s) 987, 1391
RseI CAYNNNNRTG 3 cut(s) 136, 245, 1464
SapI GCTCTTC 1 cut(s) 1431
SaqAI TTAA 5 cut(s) 213, 459, 1416, 1475, 1490
SatI GCNGC 7 cut(s) 162, 402, 780, 903, 1380, 1452, 1504
Sau3AI GATC 1 cut(s) 921
Sau96I GGNCC 4 cut(s) 333, 379, 676, 742
SbfI CCTGCAGG 1 cut(s) 1342
SchI GAGTC 2 cut(s) 548, 1102
ScrFI CCNGG 2 cut(s) 331, 1185
SdaI CCTGCAGG 1 cut(s) 1342
SduI GDGCHC 2 cut(s) 569, 856
SfaNI GCATC 2 cut(s) 1099, 1351
SfcI CTRYAG 6 cut(s) 291, 560, 621, 1338, 1380, 1449
SinI GGWCC 2 cut(s) 333, 742
SmiMI CAYNNNNRTG 3 cut(s) 136, 245, 1464
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse8387I CCTGCAGG 1 cut(s) 1342
SsiI CCGC 3 cut(s) 245, 740, 767
SspMI CTAG 5 cut(s) 17, 66, 84, 398, 950
StyD4I CCNGG 2 cut(s) 329, 1183
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 6 cut(s) 574, 589, 1124, 1270, 1325, 1510
TaiI ACGT 2 cut(s) 1164, 1396
TaqI TCGA 2 cut(s) 1091, 1369
TfiI GAWTC 6 cut(s) 4, 20, 208, 326, 772, 1344
Tru1I TTAA 5 cut(s) 213, 459, 1416, 1475, 1490
Tru9I TTAA 5 cut(s) 213, 459, 1416, 1475, 1490
TscAI CASTG 5 cut(s) 143, 360, 577, 592, 1119
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 7 cut(s) 161, 401, 779, 902, 1379, 1451, 1503
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 5 cut(s) 17, 200, 1013, 1124, 1448
TspRI CASTG 5 cut(s) 143, 360, 577, 592, 1119
Van91I CCANNNNNTGG 2 cut(s) 485, 576
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 333, 742
XapI RAATTY 2 cut(s) 716, 945
XceI RCATGY 2 cut(s) 41, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 1196
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 1258
XspI CTAG 5 cut(s) 17, 66, 84, 398, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.