Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001793

Physical Location & Seq

Genomic Coordinates Forward (+)

28363880 .. 28371196

Gene Structure 7317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1184300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGGCTTCTACCCAGGGCAAAGAAAAGCCAGCAGCCATAAAGTTTCAGAAGAGCTACTTTGATGTGTTGGGGTTGTGCTGCTCATCAGAAGTTCCTCTGATAGAGAATATCCTCAAGCCTCTTGAAGGTGTGAAAGACGTTTCAGTGATTGTGCCTTCCAGAACTGTCATTGTTGTCCATGATAGCCTTCTCATTTCCCAGCTTCAAATCGTTAAGGCACTAAACCAAGCAAGGCTAGAAGCAAATGTGAGAGTGTATGGGGCAGGGGACATTTACAAGAAAACGTGGCCAAGTCCATATGCAATTGGTAGTGGCGTGTTACTGGTTCTATCATTTCTCAAGTACGCATATCGGCCATTAGGGTGGTTGGCCCTTGGAGCCGTGGCCGTTGGCATTTTCCCCGTTGCTTTGAAATGTTTTGCGTCTATTCGGAATTTCAGGTTTCATGACATCAACATTCTTGTTATCATTGCCGTAATTGGGACAATTGCTTTGAAGGACTATACAGAAGCTGCCTCGATTGTCTTTCTGTTCACCATTGCAGAGTGGCTCCAGTCTTCTGCAGGTTACAGGGCAAAAGCAGTGATGTCGTCGTTGATGAGCATGGCGCCCCAAAAAGCAGTCTTAGCAGAGAGTGGAGAAGTTGTGGATGTTGATGAGGTTAAGTTGAACACAATTCTTGCTGTTAAGGCTGGCGAAACTATACCGATTGATGGAATAGTTGTTGAAGGAAAAGCTGAAGTGGATGAGAAAACACTAACTGGAGAATCCTTTCCAGTTGCCAAAGAAAAGGACTCCACTGTTTGGGCAGGCACTATCAATCTTAATGGTTATATTAGCGTGAAAACTACATCATTGGCTGAAGATTGTGCGGTCGCCAAAATGGCAAAACTTGTCGAAGAGGCTCAAAACAGCAAAACCAGAACTCAAAGATTCATTGACAAATGTGCAATGTTCTATACCCCAGCGGTCCTGGTCATTTCTGTTTCTATCGCGGTGATTCCAGCTGCATTACATGTTCACAATTGGAGCAAGTGGTTTCACTTAGCTTTGGTTGTTTTAGTGAGCGGTTGTCCGTGCGCTCTCATCCTCTCTACACCCGTTGTGACTTTCTGCACGCTCACAAAAGCGGCAACATCTGGACTTCTGATCAAAGGAGGTGACTACATTGAGATTCTTGCTAAAGTCAAGATCATGGCTTTTGACAAAACTGGTACAATAACAAGGGGTGAATTTGTGGTGATGGATTTTCAATCTCTTCGTGATGACATTAGCTTGAACACATTGCTTTACTGGGTTTCAAGCATTGAGAGGAAGTCAAGTCATCCAATGGCAGATGCGCTGGTTGACTATGGAAGATCGTTTTCGGTTAAGCCTAACCCTGAAAGTGTGGAGGAGTTTCAAAATTTTCCCGGGGAAGGTATCCATGGGAGAATTGATGGACAAGATATCCACATTGGAAACAGAAAAATAGCTTTGAGAGCTGCTTGTGAAATAGTTCCAACAATTGAAGGTTCGAAAGGTGGGAAGACGATTGGATACATATACTCTGGGGGAGCCCCTGCTGGAGTCTTTACAATATCTGATGCTTGTCGATCTGGGGCTGCAGAGGCTCTCAAGGAGCTAAAGAAGTTAGGCATTAAAACAGCTATGCTCACAGGAGATAGTAATGCTGCCGCATTGCATACAAATGAGCAGCTTAAGCAAGCTCTCGAGGTAGTCCAGGCAGAACTTCTACCTGAAGACAAGGCAAGAATCATTAAAGAATTTAAAATGGAAGGAAACACAGCAATGGTTGGAGACGGGATCAATGATGCCGCTGCTTTAGCTACAGCCGATGTTGGTATCTCAATGGGCATTTCAGGATCAGCCCTTGCTCAAGAAACTGGGAATATAATTTTACTGTCAAATGACATTAGGAAACTACCGAAAGCAGTCCAACTTGCGAGAAGAGCTAAAAGAAAAGTGATTGAGAATGTGGCTTTGTCCATCACTACTAAGGCGAGTATCCTTGCACTGGGATTTGCAGGGCATCCGCTTGTTTGGGCTGCAGTTCTTGCTGATGTCGGGACATGCATGCTTGTGATATTCAACAGCATGCTACTCTTACAAGGAACCAACAAGCATGGAGGGAAAACTTCTGCACCACATGGCCATAAACATGGAAGCCATGGACATAGCCATTCTCACAAAAGCCAACATTGTTGCTCGGACAGCAAACCCGTAAAAGCCTGTAAACCTCAAAAGTGTTCCTCGCAGAAATGCGGATCAGAGTGCCATCCTAGTCCCTTAAATTCAAGCTTTCCCTGTAAGCTTAAGTGCAGTGATGACTTACACGAGGCACGACACTGTGATGAAACAAGCTGCATCAAAGTCAGTCATGATCTCGAGTCACAGAATAAACACAATCATGGTTGTTTGAGTCATCATAATTTGAGCTCATGCGCAGAAGGTGATAAACTTCACGAGGCAAAACACTGCAATCATTCTGCTTCTTCTTTGGTGGAAATTCAAAAGTTGACAAGTAAAGGTCATTGCCACACGACCCACTGCGGCAAAGAGCACAGCAGAAATGAAGCGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006950 GO:0008150 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0015691 GO:0016020 GO:0030001 GO:0030054 GO:0031090 GO:0032025 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0061687 GO:0065007 GO:0065008 GO:0070838 GO:0071585 GO:0071944 GO:0072507 GO:0072511 GO:0097501 GO:0098588 GO:0098754 GO:0098771 GO:0098805 GO:1990170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

863

Amino Acids

92.62

Weight (kDa)

8.46

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	205 - 300	7e-23	P-type ATPase actuator domain
Hydrolase	PF00702	396 - 613	1.2e-26	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19110 AT2G19110 AT2G19110 AT4G30110 AT4G30110 AT4G30120 AT4G30120
fragaria_vesca	FvH4_4g07520 FvH4_4g07520 FvH4_4g07520 FvH4_4g07520 FvH4_6g33520 FvH4_6g33520 FvH4_6g33520 FvH4_6g33520
malus_domestica	MD00G1104400.v1.1 MD01G1183400.v1.1 MD01G1183700.v1.1 MD01G1184000.v1.1 MD01G1184300.v1.1 MD13G1244500.v1.1 MD16G1252700.v1.1
prunus_persica	Prupe.1G078700_v2.0.a1 Prupe.1G078700_v2.0.a1 Prupe.1G078700_v2.0.a1
pyrus_communis	pycom13g21550 pycom16g21330
rosa_chinensis	RchiOBHm_Chr2g0143431 RchiOBHm_Chr4g0400101
rosa_laevigata	RLG00000009214 RLG00000020035
rosa_multiflora	Rmu_sc0000037.1_g000006
rosa_roxburghii	Rroxscaffold_2G00101850 Rroxscaffold_5G00345040 Rroxscaffold_5G00345070
rosa_rugosa	Rorug02G0381400 Rorug04G0022600 Rorug04G0022600
rosa_samantha	Rh2AG434400 Rh2BG442200 Rh2CG420300 Rh2DG452400 Rh4BG096400 Rh4CG107500 Rh4DG093000
rosa_wichuraiana	Rw2G035400 Rw4G008180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2446
Acc36I	ACCTGC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	1068
AccII	CGCG	1 cut(s)	995
AclWI	GGATC	3 cut(s)	1814, 1873, 2275
AcoI	YGGCCR	4 cut(s)	287, 353, 384, 2152
AcsI	RAATTY	6 cut(s)	433, 1232, 1405, 1766, 2293, 2508
AcuI	CTGAAG	3 cut(s)	759, 882, 1761
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	2 cut(s)	344, 1216
AfiI	CCNNNNNNNGG	6 cut(s)	125, 480, 713, 804, 1418, 2017
AflII	CTTAAG	2 cut(s)	1700, 2315
AflIII	ACRYGT	1 cut(s)	1015
AjnI	CCWGG	3 cut(s)	12, 972, 1722
Alw21I	GWGCWC	2 cut(s)	2441, 2565
Alw26I	GTCTC	1 cut(s)	1794
AlwI	GGATC	3 cut(s)	1814, 1873, 2275
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	3 cut(s)	1412, 1712, 2387
AoxI	GGCC	5 cut(s)	287, 353, 369, 384, 2152
ApoI	RAATTY	6 cut(s)	433, 1232, 1405, 1766, 2293, 2508
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
Asp700I	GAANNNNTTC	2 cut(s)	771, 1497
AspLEI	GCGC	4 cut(s)	610, 1082, 1342, 2447
AspS9I	GGNCC	2 cut(s)	370, 970
AsuC2I	CCSGG	2 cut(s)	1413, 1414
AsuHPI	GGTGA	6 cut(s)	526, 1009, 1172, 1241, 1252, 2465
AsuII	TTCGAA	1 cut(s)	1517
AvaI	CYCGRG	3 cut(s)	1412, 1712, 2387
AvaII	GGWCC	1 cut(s)	970
BalI	TGGCCA	2 cut(s)	289, 2154
BanI	GGYRCC	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	1561, 2441
BauI	CACGAG	2 cut(s)	2336, 2465
BbsI	GAAGAC	3 cut(s)	549, 1535, 1749
Bbv12I	GWGCWC	2 cut(s)	2441, 2565
BccI	CCATC	5 cut(s)	707, 1237, 1433, 1997, 2286
BceAI	ACGGC	3 cut(s)	365, 371, 458
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	3 cut(s)	14, 974, 1724
BciVI	GTATCC	3 cut(s)	1433, 1532, 2018
BclI	TGATCA	1 cut(s)	1149
BcnI	CCSGG	2 cut(s)	1413, 1414
BcoDI	GTCTC	1 cut(s)	1794
BfaI	CTAG	2 cut(s)	236, 2283
BfmI	CTRYAG	4 cut(s)	561, 1605, 1830, 2049
BfoI	RGCGCY	1 cut(s)	611
BfrI	CTTAAG	2 cut(s)	1700, 2315
BfuAI	ACCTGC	1 cut(s)	554
BfuI	GTATCC	3 cut(s)	1433, 1532, 2018
BglI	GCCNNNNNGGC	1 cut(s)	884
Bme1390I	CCNGG	5 cut(s)	14, 974, 1413, 1414, 1724
Bme18I	GGWCC	1 cut(s)	970
BmeT110I	CYCGRG	3 cut(s)	1412, 1712, 2387
BmgT120I	GGNCC	2 cut(s)	370, 970
BmiI	GGNNCC	5 cut(s)	379, 551, 609, 1558, 2116
BmrFI	CCNGG	5 cut(s)	14, 974, 1413, 1414, 1724
BmrI	ACTGGG	3 cut(s)	1303, 1896, 2027
BmsI	GCATC	5 cut(s)	1327, 1576, 1804, 2041, 2376
BmuI	ACTGGG	3 cut(s)	1303, 1896, 2027
BpiI	GAAGAC	3 cut(s)	549, 1535, 1749
BpmI	CTGGAG	3 cut(s)	536, 783, 1587
Bpu14I	TTCGAA	1 cut(s)	1517
BpuEI	CTTGAG	4 cut(s)	98, 323, 1601, 1863
BpuMI	CCSGG	2 cut(s)	1413, 1414
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	8 cut(s)	12, 13, 373, 381, 1412, 1413, 1426, 2170
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	6 cut(s)	125, 480, 713, 804, 1418, 2017
Bse1I	ACTGG	8 cut(s)	327, 553, 766, 776, 1216, 1298, 1891, 2022
Bse3DI	GCAATG	7 cut(s)	468, 537, 957, 1283, 1679, 1797, 2533
BseBI	CCWGG	3 cut(s)	14, 974, 1724
BseDI	CCNNGG	8 cut(s)	12, 13, 373, 381, 1412, 1413, 1426, 2170
BseGI	GGATG	6 cut(s)	655, 751, 1086, 1324, 2032, 2278
BseLI	CCNNNNNNNGG	6 cut(s)	125, 480, 713, 804, 1418, 2017
BseMI	GCAATG	7 cut(s)	468, 537, 957, 1283, 1679, 1797, 2533
BseNI	ACTGG	8 cut(s)	327, 553, 766, 776, 1216, 1298, 1891, 2022
BseRI	GAGGAG	1 cut(s)	1409
BseYI	CCCAGC	2 cut(s)	198, 964
BsgI	GTGCAG	3 cut(s)	1099, 2127, 2341
Bsh1236I	CGCG	1 cut(s)	995
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	5 cut(s)	289, 355, 371, 386, 2154
BshNI	GGYRCC	1 cut(s)	607
BsiEI	CGRYCG	1 cut(s)	876
BsiHKAI	GWGCWC	2 cut(s)	2441, 2565
BsiHKCI	CYCGRG	3 cut(s)	1412, 1712, 2387
BsiSI	CCGG	1 cut(s)	1413
BslFI	GGGAC	4 cut(s)	281, 496, 2083, 2271
BslI	CCNNNNNNNGG	6 cut(s)	125, 480, 713, 804, 1418, 2017
BsmAI	GTCTC	1 cut(s)	1794
BsmBI	CGTCTC	1 cut(s)	1794
BsmFI	GGGAC	4 cut(s)	281, 496, 2083, 2271
BsnI	GGCC	5 cut(s)	289, 355, 371, 386, 2154
BsoBI	CYCGRG	3 cut(s)	1412, 1712, 2387
Bsp119I	TTCGAA	1 cut(s)	1517
Bsp1286I	GDGCHC	3 cut(s)	1561, 2441, 2565
Bsp143I	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
Bsp19I	CCATGG	2 cut(s)	1426, 2170
BspANI	GGCC	5 cut(s)	289, 355, 371, 386, 2154
BspFNI	CGCG	1 cut(s)	995
BspHI	TCATGA	2 cut(s)	445, 2380
BspLI	GGNNCC	5 cut(s)	379, 551, 609, 1558, 2116
BspMAI	CTGCAG	3 cut(s)	565, 1609, 2053
BspMI	ACCTGC	1 cut(s)	554
BspPI	GGATC	3 cut(s)	1814, 1873, 2275
BspQI	GCTCTTC	2 cut(s)	44, 1945
BspT104I	TTCGAA	1 cut(s)	1517
BspT107I	GGYRCC	1 cut(s)	607
BspTI	CTTAAG	2 cut(s)	1700, 2315
BsrBI	CCGCTC	1 cut(s)	1068
BsrDI	GCAATG	7 cut(s)	468, 537, 957, 1283, 1679, 1797, 2533
BsrI	ACTGG	8 cut(s)	327, 553, 766, 776, 1216, 1298, 1891, 2022
BssECI	CCNNGG	8 cut(s)	12, 13, 373, 381, 1412, 1413, 1426, 2170
BssMI	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	2 cut(s)	2336, 2465
BssT1I	CCWWGG	3 cut(s)	373, 1426, 2170
Bst2BI	CACGAG	2 cut(s)	2336, 2465
Bst2UI	CCWGG	3 cut(s)	14, 974, 1724
Bst4CI	ACNGT	4 cut(s)	166, 802, 1905, 2351
Bst6I	CTCTTC	4 cut(s)	44, 894, 1263, 1945
BstACI	GRCGYC	1 cut(s)	608
BstAFI	CTTAAG	2 cut(s)	1700, 2315
BstAPI	GCANNNNNTGC	1 cut(s)	2057
BstBI	TTCGAA	1 cut(s)	1517
BstC8I	GCNNGC	7 cut(s)	30, 694, 811, 1118, 1707, 2078, 2099
BstDEI	CTNAG	3 cut(s)	625, 1045, 1998
BstDSI	CCRYGG	3 cut(s)	381, 1426, 2170
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	6 cut(s)	655, 751, 1086, 1324, 2032, 2278
BstFNI	CGCG	1 cut(s)	995
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	4 cut(s)	610, 1082, 1342, 2447
BstKTI	GATC	8 cut(s)	1152, 1194, 1361, 1598, 1809, 1868, 2270, 2386
BstMAI	GTCTC	1 cut(s)	1794
BstMBI	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
BstMCI	CGRYCG	1 cut(s)	876
BstNI	CCWGG	3 cut(s)	14, 974, 1724
BstNSI	RCATGY	4 cut(s)	1019, 2076, 2080, 2101
BstSCI	CCNGG	5 cut(s)	12, 972, 1411, 1412, 1722
BstSFI	CTRYAG	4 cut(s)	561, 1605, 1830, 2049
BstUI	CGCG	1 cut(s)	995
BstV2I	GAAGAC	3 cut(s)	549, 1535, 1749
BstXI	CCANNNNNNTGG	2 cut(s)	363, 2162
BsuI	GTATCC	3 cut(s)	1433, 1532, 2018
BsuRI	GGCC	5 cut(s)	289, 355, 371, 386, 2154
BtgI	CCRYGG	3 cut(s)	381, 1426, 2170
BtsCI	GGATG	6 cut(s)	655, 751, 1086, 1324, 2032, 2278
BtsI	GCAGTG	4 cut(s)	588, 2329, 2476, 2548
BtsIMutI	CAGTG	8 cut(s)	150, 588, 798, 2015, 2329, 2347, 2476, 2548
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	7 cut(s)	30, 694, 811, 1118, 1707, 2078, 2099
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	2 cut(s)	445, 2380
CfoI	GCGC	4 cut(s)	610, 1082, 1342, 2447
Cfr13I	GGNCC	2 cut(s)	370, 970
Cfr9I	CCCGGG	1 cut(s)	1412
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	343, 1215
CviQI	GTAC	2 cut(s)	343, 1215
DdeI	CTNAG	3 cut(s)	625, 1045, 1998
DinI	GGCGCC	1 cut(s)	609
DpnI	GATC	8 cut(s)	1151, 1193, 1360, 1597, 1808, 1867, 2269, 2385
DpnII	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
DraI	TTTAAA	1 cut(s)	1771
EaeI	YGGCCR	4 cut(s)	287, 353, 384, 2152
Eam1104I	CTCTTC	4 cut(s)	44, 894, 1263, 1945
EarI	CTCTTC	4 cut(s)	44, 894, 1263, 1945
Ecl136II	GAGCTC	1 cut(s)	2439
Eco130I	CCWWGG	3 cut(s)	373, 1426, 2170
Eco24I	GRGCYC	2 cut(s)	1561, 2441
Eco32I	GATATC	1 cut(s)	1450
Eco47I	GGWCC	1 cut(s)	970
Eco53kI	GAGCTC	1 cut(s)	2439
Eco57I	CTGAAG	3 cut(s)	759, 882, 1761
Eco88I	CYCGRG	3 cut(s)	1412, 1712, 2387
EcoICRI	GAGCTC	1 cut(s)	2439
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	3 cut(s)	12, 972, 1722
EcoRV	GATATC	1 cut(s)	1450
EcoT14I	CCWWGG	3 cut(s)	373, 1426, 2170
EcoT22I	ATGCAT	1 cut(s)	2078
EcoT38I	GRGCYC	2 cut(s)	1561, 2441
EgeI	GGCGCC	1 cut(s)	609
EheI	GGCGCC	1 cut(s)	609
ErhI	CCWWGG	3 cut(s)	373, 1426, 2170
Esp3I	CGTCTC	1 cut(s)	1794
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	4 cut(s)	281, 496, 2083, 2271
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	1149
FokI	GGATG	6 cut(s)	662, 758, 1073, 1311, 2019, 2265
FriOI	GRGCYC	2 cut(s)	1561, 2441
FspBI	CTAG	2 cut(s)	236, 2283
FspI	TGCGCA	1 cut(s)	2446
GlaI	GCGC	4 cut(s)	609, 1081, 1341, 2446
GsaI	CCCAGC	2 cut(s)	202, 968
GsuI	CTGGAG	3 cut(s)	536, 783, 1587
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	5 cut(s)	289, 355, 371, 386, 2154
HapII	CCGG	1 cut(s)	1413
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	4 cut(s)	610, 1082, 1342, 2447
Hin1I	GRCGYC	1 cut(s)	608
Hin6I	GCGC	4 cut(s)	608, 1080, 1340, 2445
HinP1I	GCGC	4 cut(s)	608, 1080, 1340, 2445
HincII	GTYRAC	2 cut(s)	1348, 2520
HindII	GTYRAC	2 cut(s)	1348, 2520
HindIII	AAGCTT	2 cut(s)	2299, 2312
HinfI	GANTC	9 cut(s)	767, 794, 933, 1000, 1174, 1569, 1755, 2390, 2422
HpaII	CCGG	1 cut(s)	1413
HphI	GGTGA	6 cut(s)	526, 1009, 1172, 1241, 1252, 2465
Hpy166II	GTNNAC	5 cut(s)	534, 1021, 1348, 2237, 2520
Hpy188I	TCNGA	8 cut(s)	48, 88, 99, 432, 1149, 1585, 2212, 2272
Hpy8I	GTNNAC	5 cut(s)	534, 1021, 1348, 2237, 2520
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	9 cut(s)	119, 165, 197, 490, 722, 1412, 1505, 1772, 2444
HpyCH4III	ACNGT	4 cut(s)	166, 802, 1905, 2351
HpyCH4IV	ACGT	2 cut(s)	138, 284
HpyF3I	CTNAG	3 cut(s)	625, 1045, 1998
HpySE526I	ACGT	2 cut(s)	138, 284
Hsp92I	GRCGYC	1 cut(s)	608
HspAI	GCGC	4 cut(s)	608, 1080, 1340, 2445
KasI	GGCGCC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	1149
Kzo9I	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
LguI	GCTCTTC	2 cut(s)	44, 1945
LmnI	GCTCC	5 cut(s)	377, 555, 1029, 1556, 1621
LweI	GCATC	5 cut(s)	1327, 1576, 1804, 2041, 2376
MaeI	CTAG	2 cut(s)	236, 2283
MaeII	ACGT	2 cut(s)	138, 284
MaeIII	GTNAC	5 cut(s)	318, 566, 1105, 1160, 2391
MalI	GATC	8 cut(s)	1151, 1193, 1360, 1597, 1808, 1867, 2269, 2385
MbiI	CCGCTC	1 cut(s)	1068
MboI	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
MfeI	CAATTG	4 cut(s)	303, 486, 1024, 1506
MhlI	GDGCHC	3 cut(s)	1561, 2441, 2565
MlsI	TGGCCA	2 cut(s)	289, 2154
MluNI	TGGCCA	2 cut(s)	289, 2154
Mly113I	GGCGCC	1 cut(s)	608
MlyI	GAGTC	4 cut(s)	788, 1578, 2399, 2431
MmeI	TCCRAC	3 cut(s)	1526, 1777, 1963
Mox20I	TGGCCA	2 cut(s)	289, 2154
Mph1103I	ATGCAT	1 cut(s)	2078
MroXI	GAANNNNTTC	2 cut(s)	771, 1497
MscI	TGGCCA	2 cut(s)	289, 2154
MslI	CAYNNNNRTG	7 cut(s)	361, 1689, 1790, 2081, 2160, 2352, 2409
Msp20I	TGGCCA	2 cut(s)	289, 2154
MspA1I	CMGCKG	3 cut(s)	968, 1007, 1820
MspCI	CTTAAG	2 cut(s)	1700, 2315
MspI	CCGG	1 cut(s)	1413
MspR9I	CCNGG	5 cut(s)	14, 974, 1413, 1414, 1724
MunI	CAATTG	4 cut(s)	303, 486, 1024, 1506
MvaI	CCWGG	3 cut(s)	14, 974, 1724
MvnI	CGCG	1 cut(s)	995
NarI	GGCGCC	1 cut(s)	608
NciI	CCSGG	2 cut(s)	1413, 1414
NcoI	CCATGG	2 cut(s)	1426, 2170
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
NlaIV	GGNNCC	5 cut(s)	379, 551, 609, 1558, 2116
NmuCI	GTSAC	3 cut(s)	1105, 1160, 2391
NsbI	TGCGCA	1 cut(s)	2446
NsiI	ATGCAT	1 cut(s)	2078
NspI	RCATGY	4 cut(s)	1019, 2076, 2080, 2101
NspV	TTCGAA	1 cut(s)	1517
PaeI	GCATGC	2 cut(s)	2080, 2101
PaeR7I	CTCGAG	2 cut(s)	1712, 2387
PagI	TCATGA	2 cut(s)	445, 2380
PasI	CCCWGGG	1 cut(s)	13
PciI	ACATGT	1 cut(s)	1015
PciSI	GCTCTTC	2 cut(s)	44, 1945
PdmI	GAANNNNTTC	2 cut(s)	771, 1497
PfeI	GAWTC	5 cut(s)	767, 933, 1000, 1174, 1755
PflMI	CCANNNNNTGG	1 cut(s)	804
PleI	GAGTC	4 cut(s)	788, 1577, 2398, 2430
PluTI	GGCGCC	1 cut(s)	611
PpsI	GAGTC	4 cut(s)	788, 1577, 2398, 2430
PscI	ACATGT	1 cut(s)	1015
Psp124BI	GAGCTC	1 cut(s)	2441
Psp6I	CCWGG	3 cut(s)	12, 972, 1722
PspFI	CCCAGC	2 cut(s)	198, 964
PspGI	CCWGG	3 cut(s)	12, 972, 1722
PspN4I	GGNNCC	5 cut(s)	379, 551, 609, 1558, 2116
PspPI	GGNCC	2 cut(s)	370, 970
PstI	CTGCAG	3 cut(s)	565, 1609, 2053
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	344, 1216
RsaNI	GTAC	2 cut(s)	343, 1215
RseI	CAYNNNNRTG	7 cut(s)	361, 1689, 1790, 2081, 2160, 2352, 2409
SacI	GAGCTC	1 cut(s)	2441
SapI	GCTCTTC	2 cut(s)	44, 1945
Sau3AI	GATC	8 cut(s)	1149, 1191, 1358, 1595, 1806, 1865, 2267, 2383
Sau96I	GGNCC	2 cut(s)	370, 970
SchI	GAGTC	4 cut(s)	788, 1578, 2399, 2431
ScrFI	CCNGG	5 cut(s)	14, 974, 1413, 1414, 1724
SduI	GDGCHC	3 cut(s)	1561, 2441, 2565
SfaNI	GCATC	5 cut(s)	1327, 1576, 1804, 2041, 2376
SfcI	CTRYAG	4 cut(s)	561, 1605, 1830, 2049
SfoI	GGCGCC	1 cut(s)	609
Sfr274I	CTCGAG	2 cut(s)	1712, 2387
SfuI	TTCGAA	1 cut(s)	1517
SinI	GGWCC	1 cut(s)	970
SlaI	CTCGAG	2 cut(s)	1712, 2387
SmaI	CCCGGG	1 cut(s)	1414
SmiMI	CAYNNNNRTG	7 cut(s)	361, 1689, 1790, 2081, 2160, 2352, 2409
SmlI	CTYRAG	8 cut(s)	113, 338, 1616, 1700, 1712, 1878, 2315, 2387
SmoI	CTYRAG	8 cut(s)	113, 338, 1616, 1700, 1712, 1878, 2315, 2387
SphI	GCATGC	2 cut(s)	2080, 2101
SspDI	GGCGCC	1 cut(s)	607
SspMI	CTAG	2 cut(s)	236, 2283
SstI	GAGCTC	1 cut(s)	2441
StyD4I	CCNGG	5 cut(s)	12, 972, 1411, 1412, 1722
StyI	CCWWGG	3 cut(s)	373, 1426, 2170
TaaI	ACNGT	4 cut(s)	166, 802, 1905, 2351
TaiI	ACGT	2 cut(s)	141, 287
TaqI	TCGA	6 cut(s)	518, 897, 1517, 1594, 1713, 2388
TauI	GCSGC	4 cut(s)	1133, 1679, 1820, 2556
TfiI	GAWTC	5 cut(s)	767, 933, 1000, 1174, 1755
TscAI	CASTG	8 cut(s)	150, 588, 805, 2022, 2329, 2354, 2483, 2555
TseFI	GTSAC	3 cut(s)	1105, 1160, 2391
Tsp45I	GTSAC	3 cut(s)	1105, 1160, 2391
TspDTI	ATGAA	4 cut(s)	434, 925, 2370, 2589
TspGWI	ACGGA	1 cut(s)	1065
TspMI	CCCGGG	1 cut(s)	1412
TspRI	CASTG	8 cut(s)	150, 588, 805, 2022, 2329, 2354, 2483, 2555
Van91I	CCANNNNNTGG	1 cut(s)	804
Vha464I	CTTAAG	2 cut(s)	1700, 2315
VpaK11BI	GGWCC	1 cut(s)	970
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	6 cut(s)	433, 1232, 1405, 1766, 2293, 2508
XceI	RCATGY	4 cut(s)	1019, 2076, 2080, 2101
XhoI	CTCGAG	2 cut(s)	1712, 2387
XmaI	CCCGGG	1 cut(s)	1412
XmnI	GAANNNNTTC	2 cut(s)	771, 1497
XspI	CTAG	2 cut(s)	236, 2283
Zsp2I	ATGCAT	1 cut(s)	2078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.