pycom16g21330

cadmium zinc-transporting ATPase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
19678582 .. 19681042
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21330.4

Sequence Viewer

Length: 1938 bp
ATGGCTTTTGACAAAACTGGGACAATAACAAGGGGTGAATTTGTGGTGATGGATTTTCAATCTCTTCGTGATGACATTAGCTTGAACACATTGCTTTACTGGGTTGCAAGCATTGAGAGGAAGTCCAGTCATCCAATGGCAGATGCGCTGGTTGACTATGGAAGATCGCTTTCGATTGAGCCAAAACCTGAAAATGTGGAGGAGTTTCAAAATTTTCCCGGGGAAGGTATCCATGGGAAAATTGATGGACAAGATATCTACATTGGAAACAGAAAAATAGCTTTACGAGCTGCTTGTGAAATAGTTCCTACAACTGAAGGTTCTAATGGTGGGAAAACGATTGGATACATATACTCTGGAGGAACCCCAGCCGGAGTCTTTACAATATCTGATGCTTGTCGATCTGGGGCCGCAGAGGCTATCAGAGAGCTGAAGAAGTTGGGTATTAAAACAGCTATGCTCACTGGAGATAGTAATGCTGCCTCATTGCATACAAATGAACAGCTTAAGCAAGCTCTCGAGGTAGTACATGCAGAACTTCTACCTGAAGATAAGGCAAGAATCGTTAAAGAATTTAAAACGGAAGGAAATACAGCAATGGTTGGAGACGGTATCAATGATGCCCCTGCATTAGCCACAGCGGATATTGGTATCTCAATGGGCATTTCAGGATCAGCCCTTGCTCAAGAAACTGGGAATATAATTTTACTGTCAAATGACATTAGGAAACTACCAAAAGCAGTCCGACTGGCGAGAAGGGCTAATAGAAAAGTGGTTGAGAATGTTGTTTTGTCAATCACTACTAAGGTTGGTATCCTTGCACTGGGATTTGCAGGGCATCCGCTCGTTTGGGCTGCGGTTCTTGCTGATGTTGGGACATGCATGCTTGTTATATTCAATAGCATGCTACTCTTACAAGGAACCCAAAAGCATGGAGGGAGTACTTCTGCACCACATGCCCATAAACATGGAAGCCATGGACATAGCCTCTCTCACAAAAACCAACATTGTTGCTCAGATAGCAAACCTGTGAAAGCCTGTGAACCTCAAAAGTGTTCATCGCAGTGCCAGCCTACTCCCTTGAATTCAAGCTTGCCGTGTATGCTTAAGTGCAGTGATGACTTACGCAAGGCAAGACACTGTGATGAAGCAAGCTGCATGAAAGTCAATAAAGATCTTGAGTCACAGAATAAACACAATCATGGTTTTTTGAGTCATCATAATTTGAGCTCATGTGCAGAAGGTGATAAAATTCACGAGGCAAAACACTGCGATGGTTCTGCTTCTTCTTTGGTTGAAATTCCAAAGTTGACAAGTAAAGGTCATTGCCACTCAACGCACTGCAGCAAAGAGCACAGCACAAAGGAAAGTGATGGAGTCCATGAGGAAAAACACTGCAATCATTCCATCTTTTCTTTGGATGAAAGCAAAAGATTGACAGATAGTGACATTTCCCACTCAAGAAACTGTGGAAAGGAGCGTAGTAGAAAGGAAGGTGATGCAATACACGAGCCAAAACACTGCAACCATTCTGCTTTTTCAATGGAGGAATGCCAAAAATTGACAAGTACTGGTCATTGCCACTCAACTCACTGTGGCAAAGATCATATTCACAATGAAGCGTTAGGAGAGACGTTTGCCACAAGCTGTGATCATCAGCGTCACTGTAATCTGGATGAAAACTCGCCTCCTTATACGACTATTGATATTGTAACGGGTTGTGACCAAGCAGAATCAGCCCCAACGAAATCTTGCATTGCCTCAGGGACAATGGAAAAGGAAGTGTGCTGCTCGGAATCAGTAGCAAGTCAAGCTTGTGTGTTAGAGAAAAGAGAAGTCGGTGGGTGCTGCAAAAGCTACATGAAGGAATGCTGTGGTAGTCATGGGCATATTGGTTCTAGCTTTAAGGGTTGTTCATCAGAAATCACAATTGAATAG

Protein Analysis

646

Amino Acids

69.55

Weight (kDa)

6.42

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 844
AciI CCGC 4 cut(s) 411, 641, 842, 857
AclWI GGATC 1 cut(s) 679
AcsI RAATTY 6 cut(s) 38, 211, 572, 1084, 1251, 1299
AcuI CTGAAG 3 cut(s) 336, 452, 567
AfaI GTAC 3 cut(s) 528, 943, 1570
AfiI CCNNNNNNNGG 2 cut(s) 224, 823
AflII CTTAAG 2 cut(s) 506, 1106
AgsI TTSAA 9 cut(s) 59, 85, 209, 898, 1084, 1089, 1298, 1542, 1934
Alw21I GWGCWC 2 cut(s) 1232, 1356
Alw26I GTCTC 2 cut(s) 600, 1625
AlwI GGATC 1 cut(s) 679
Ama87I CYCGRG 2 cut(s) 218, 518
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 7 cut(s) 290, 479, 854, 1155, 1344, 1788, 1848
ApoI RAATTY 6 cut(s) 38, 211, 572, 1084, 1251, 1299
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 2 cut(s) 219, 220
AsuHPI GGTGA 4 cut(s) 47, 58, 1256, 1508
AvaI CYCGRG 2 cut(s) 218, 518
AxyI CCTNAGG 1 cut(s) 1762
BanII GRGCYC 1 cut(s) 1232
BauI CACGAG 2 cut(s) 1256, 1508
Bbv12I GWGCWC 2 cut(s) 1232, 1356
BbvI GCAGC 7 cut(s) 277, 466, 841, 1142, 1356, 1775, 1835
BccI CCATC 5 cut(s) 43, 239, 1268, 1367, 1415
BceAI ACGGC 1 cut(s) 1081
BcgI CGANNNNNNTGC 2 cut(s) 1262, 1296
BciVI GTATCC 3 cut(s) 239, 338, 824
BclI TGATCA 1 cut(s) 1651
BcnI CCSGG 2 cut(s) 219, 220
BcoDI GTCTC 2 cut(s) 600, 1625
BfaI CTAG 1 cut(s) 1899
BfmI CTRYAG 1 cut(s) 1342
BfrI CTTAAG 2 cut(s) 506, 1106
BfuI GTATCC 3 cut(s) 239, 338, 824
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 1174
BisI GCNGC 8 cut(s) 291, 411, 480, 855, 1156, 1345, 1789, 1849
BlsI GCNGC 8 cut(s) 292, 412, 481, 856, 1157, 1346, 1790, 1850
BmcAI AGTACT 2 cut(s) 943, 1570
Bme1390I CCNGG 2 cut(s) 219, 220
BmeT110I CYCGRG 2 cut(s) 218, 518
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 3 cut(s) 364, 409, 922
BmrFI CCNGG 2 cut(s) 219, 220
BmrI ACTGGG 4 cut(s) 27, 109, 702, 833
BmsI GCATC 5 cut(s) 133, 382, 610, 847, 1489
BmuI ACTGGG 4 cut(s) 27, 109, 702, 833
BpmI CTGGAG 2 cut(s) 378, 486
BpuEI CTTGAG 3 cut(s) 669, 1199, 1444
BpuMI CCSGG 2 cut(s) 219, 220
BsaJI CCNNGG 4 cut(s) 218, 219, 232, 976
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 823
Bse1I ACTGG 8 cut(s) 22, 104, 126, 469, 697, 753, 828, 1576
Bse21I CCTNAGG 1 cut(s) 1762
Bse3DI GCAATG 6 cut(s) 89, 485, 603, 1324, 1576, 1755
BseDI CCNNGG 4 cut(s) 218, 219, 232, 976
BseGI GGATG 4 cut(s) 130, 838, 1426, 1681
BseLI CCNNNNNNNGG 2 cut(s) 224, 823
BseMI GCAATG 6 cut(s) 89, 485, 603, 1324, 1576, 1755
BseMII CTCAG 2 cut(s) 1029, 1776
BseNI ACTGG 8 cut(s) 22, 104, 126, 469, 697, 753, 828, 1576
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 7 cut(s) 277, 466, 841, 1142, 1356, 1775, 1835
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 3 cut(s) 933, 1132, 1257
BshFI GGCC 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 1232, 1356
BsiHKCI CYCGRG 2 cut(s) 218, 518
BsiSI CCGG 2 cut(s) 219, 372
BslFI GGGAC 3 cut(s) 34, 889, 1780
BslI CCNNNNNNNGG 2 cut(s) 224, 823
BsmAI GTCTC 2 cut(s) 600, 1625
BsmBI CGTCTC 2 cut(s) 600, 1625
BsmFI GGGAC 3 cut(s) 34, 889, 1780
BsmI GAATGC 2 cut(s) 1556, 1874
BsnI GGCC 1 cut(s) 410
BsoBI CYCGRG 2 cut(s) 218, 518
Bsp1286I GDGCHC 2 cut(s) 1232, 1356
Bsp143I GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
Bsp19I CCATGG 2 cut(s) 232, 976
BspACI CCGC 4 cut(s) 411, 641, 842, 857
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 1028, 1775
BspLI GGNNCC 3 cut(s) 364, 409, 922
BspMAI CTGCAG 1 cut(s) 1346
BspPI GGATC 1 cut(s) 679
BspTI CTTAAG 2 cut(s) 506, 1106
BsrBI CCGCTC 1 cut(s) 844
BsrDI GCAATG 6 cut(s) 89, 485, 603, 1324, 1576, 1755
BsrI ACTGG 8 cut(s) 22, 104, 126, 469, 697, 753, 828, 1576
BssECI CCNNGG 4 cut(s) 218, 219, 232, 976
BssMI GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
BssSI CACGAG 2 cut(s) 1256, 1508
BssT1I CCWWGG 2 cut(s) 232, 976
Bst2BI CACGAG 2 cut(s) 1256, 1508
Bst4CI ACNGT 6 cut(s) 611, 711, 1142, 1469, 1595, 1667
Bst6I CTCTTC 1 cut(s) 69
BstAFI CTTAAG 2 cut(s) 506, 1106
BstAPI GCANNNNNTGC 1 cut(s) 956
BstC8I GCNNGC 7 cut(s) 109, 513, 884, 905, 1070, 1094, 1153
BstDEI CTNAG 3 cut(s) 804, 1015, 1762
BstDSI CCRYGG 2 cut(s) 232, 976
BstF5I GGATG 4 cut(s) 130, 838, 1426, 1681
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 6 cut(s) 167, 404, 674, 1177, 1606, 1654
BstMAI GTCTC 2 cut(s) 600, 1625
BstMBI GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
BstNSI RCATGY 5 cut(s) 533, 882, 886, 907, 959
BstSCI CCNGG 2 cut(s) 217, 218
BstSFI CTRYAG 1 cut(s) 1342
BstV1I GCAGC 7 cut(s) 277, 466, 841, 1142, 1356, 1775, 1835
BstX2I RGATCY 1 cut(s) 1174
BstXI CCANNNNNNTGG 2 cut(s) 932, 968
BstYI RGATCY 1 cut(s) 1174
Bsu36I CCTNAGG 1 cut(s) 1762
BsuI GTATCC 3 cut(s) 239, 338, 824
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 2 cut(s) 232, 976
BtgZI GCGATG 2 cut(s) 1044, 1287
BtsCI GGATG 4 cut(s) 130, 838, 1426, 1681
BtsI GCAGTG 6 cut(s) 1070, 1120, 1267, 1339, 1393, 1519
Cac8I GCNNGC 7 cut(s) 109, 513, 884, 905, 1070, 1094, 1153
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 408
Cfr9I CCCGGG 1 cut(s) 218
CseI GACGC 1 cut(s) 1649
Csp6I GTAC 3 cut(s) 527, 942, 1569
CviQI GTAC 3 cut(s) 527, 942, 1569
DdeI CTNAG 3 cut(s) 804, 1015, 1762
DpnI GATC 6 cut(s) 166, 403, 673, 1176, 1605, 1653
DpnII GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
DraI TTTAAA 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 1230
Eco130I CCWWGG 2 cut(s) 232, 976
Eco24I GRGCYC 1 cut(s) 1232
Eco32I GATATC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 1230
Eco57I CTGAAG 3 cut(s) 336, 452, 567
Eco81I CCTNAGG 1 cut(s) 1762
Eco88I CYCGRG 2 cut(s) 218, 518
EcoICRI GAGCTC 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 1084
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 232, 976
EcoT22I ATGCAT 1 cut(s) 884
EcoT38I GRGCYC 1 cut(s) 1232
ErhI CCWWGG 2 cut(s) 232, 976
Esp3I CGTCTC 2 cut(s) 600, 1625
FalI AAGNNNNNCTT 2 cut(s) 1798, 1830
FaqI GGGAC 3 cut(s) 34, 889, 1780
FbaI TGATCA 1 cut(s) 1651
Fnu4HI GCNGC 8 cut(s) 291, 411, 480, 855, 1156, 1345, 1789, 1849
FokI GGATG 4 cut(s) 117, 825, 1433, 1688
FriOI GRGCYC 1 cut(s) 1232
Fsp4HI GCNGC 8 cut(s) 291, 411, 480, 855, 1156, 1345, 1789, 1849
FspBI CTAG 1 cut(s) 1899
GlaI GCGC 1 cut(s) 147
GluI GCNGC 8 cut(s) 291, 411, 480, 855, 1156, 1345, 1789, 1849
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 2 cut(s) 378, 486
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 219, 372
HgaI GACGC 1 cut(s) 1649
HhaI GCGC 1 cut(s) 148
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 2 cut(s) 154, 1311
HindII GTYRAC 2 cut(s) 154, 1311
HindIII AAGCTT 2 cut(s) 1090, 1812
HinfI GANTC 7 cut(s) 375, 561, 1181, 1213, 1377, 1733, 1796
HpaII CCGG 2 cut(s) 219, 372
HphI GGTGA 4 cut(s) 47, 58, 1256, 1508
Hpy166II GTNNAC 3 cut(s) 154, 1043, 1311
Hpy188I TCNGA 6 cut(s) 391, 425, 746, 1018, 1795, 1921
Hpy188III TCNNGA 9 cut(s) 68, 357, 518, 669, 686, 1178, 1256, 1461, 1673
Hpy8I GTNNAC 3 cut(s) 154, 1043, 1311
HpyAV CCTTC 7 cut(s) 218, 311, 578, 750, 1235, 1487, 1858
HpyCH4III ACNGT 6 cut(s) 611, 711, 1142, 1469, 1595, 1667
HpyCH4IV ACGT 1 cut(s) 1634
HpyF3I CTNAG 3 cut(s) 804, 1015, 1762
HpySE526I ACGT 1 cut(s) 1634
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 1651
Kzo9I GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
LmnI GCTCC 1 cut(s) 1477
Lsp1109I GCAGC 7 cut(s) 277, 466, 841, 1142, 1356, 1775, 1835
LweI GCATC 5 cut(s) 133, 382, 610, 847, 1489
MaeI CTAG 1 cut(s) 1899
MaeII ACGT 1 cut(s) 1634
MaeIII GTNAC 5 cut(s) 1182, 1445, 1661, 1711, 1721
MalI GATC 6 cut(s) 166, 403, 673, 1176, 1605, 1653
MbiI CCGCTC 1 cut(s) 844
MboI GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
MboII GAAGA 5 cut(s) 56, 174, 445, 560, 1278
MfeI CAATTG 1 cut(s) 1929
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 2 cut(s) 1232, 1356
MlyI GAGTC 4 cut(s) 384, 1190, 1222, 1386
MmeI TCCRAC 2 cut(s) 583, 769
Mph1103I ATGCAT 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 6 cut(s) 447, 507, 567, 576, 1107, 1905
MslI CAYNNNNRTG 6 cut(s) 495, 966, 1063, 1143, 1200, 1272
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 2 cut(s) 506, 1106
MspI CCGG 2 cut(s) 219, 372
MspR9I CCNGG 2 cut(s) 219, 220
MunI CAATTG 1 cut(s) 1929
Mva1269I GAATGC 2 cut(s) 1556, 1874
NciI CCSGG 2 cut(s) 219, 220
NcoI CCATGG 2 cut(s) 232, 976
NdeII GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
NlaIV GGNNCC 3 cut(s) 364, 409, 922
NmuCI GTSAC 4 cut(s) 1182, 1445, 1661, 1721
NsiI ATGCAT 1 cut(s) 884
NspI RCATGY 5 cut(s) 533, 882, 886, 907, 959
PaeI GCATGC 2 cut(s) 886, 907
PaeR7I CTCGAG 1 cut(s) 518
PctI GAATGC 2 cut(s) 1556, 1874
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 3 cut(s) 561, 1733, 1796
PkrI GCNGC 8 cut(s) 292, 412, 481, 856, 1157, 1346, 1790, 1850
PleI GAGTC 4 cut(s) 383, 1189, 1221, 1385
PpsI GAGTC 4 cut(s) 383, 1189, 1221, 1385
Psp124BI GAGCTC 1 cut(s) 1232
PspFI CCCAGC 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 364, 409, 922
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 1346
PsuI RGATCY 1 cut(s) 1174
RsaI GTAC 3 cut(s) 528, 943, 1570
RsaNI GTAC 3 cut(s) 527, 942, 1569
RseI CAYNNNNRTG 6 cut(s) 495, 966, 1063, 1143, 1200, 1272
SacI GAGCTC 1 cut(s) 1232
SaqAI TTAA 6 cut(s) 447, 507, 567, 576, 1107, 1905
SatI GCNGC 8 cut(s) 291, 411, 480, 855, 1156, 1345, 1789, 1849
Sau3AI GATC 6 cut(s) 164, 401, 671, 1174, 1603, 1651
Sau96I GGNCC 1 cut(s) 408
ScaI AGTACT 2 cut(s) 943, 1570
SchI GAGTC 4 cut(s) 384, 1190, 1222, 1386
ScrFI CCNGG 2 cut(s) 219, 220
SduI GDGCHC 2 cut(s) 1232, 1356
SfaNI GCATC 5 cut(s) 133, 382, 610, 847, 1489
SfcI CTRYAG 1 cut(s) 1342
Sfr274I CTCGAG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 518
SmaI CCCGGG 1 cut(s) 220
SmiMI CAYNNNNRTG 6 cut(s) 495, 966, 1063, 1143, 1200, 1272
SmlI CTYRAG 6 cut(s) 506, 518, 684, 1106, 1178, 1459
SmoI CTYRAG 6 cut(s) 506, 518, 684, 1106, 1178, 1459
SphI GCATGC 2 cut(s) 886, 907
SsiI CCGC 4 cut(s) 411, 641, 842, 857
SspMI CTAG 1 cut(s) 1899
SstI GAGCTC 1 cut(s) 1232
StyD4I CCNGG 2 cut(s) 217, 218
StyI CCWWGG 2 cut(s) 232, 976
TaaI ACNGT 6 cut(s) 611, 711, 1142, 1469, 1595, 1667
TaiI ACGT 1 cut(s) 1637
TaqI TCGA 3 cut(s) 173, 400, 519
TatI WGTACW 3 cut(s) 526, 941, 1568
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 3 cut(s) 561, 1733, 1796
Tru1I TTAA 6 cut(s) 447, 507, 567, 576, 1107, 1905
Tru9I TTAA 6 cut(s) 447, 507, 567, 576, 1107, 1905
TseFI GTSAC 4 cut(s) 1182, 1445, 1661, 1721
TseI GCWGC 7 cut(s) 290, 479, 854, 1155, 1344, 1788, 1848
Tsp45I GTSAC 4 cut(s) 1182, 1445, 1661, 1721
TspDTI ATGAA 9 cut(s) 513, 1047, 1161, 1175, 1437, 1632, 1692, 1877, 1905
TspGWI ACGGA 1 cut(s) 596
TspMI CCCGGG 1 cut(s) 218
Vha464I CTTAAG 2 cut(s) 506, 1106
XapI RAATTY 6 cut(s) 38, 211, 572, 1084, 1251, 1299
XceI RCATGY 5 cut(s) 533, 882, 886, 907, 959
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 1414
XhoI CTCGAG 1 cut(s) 518
XmaI CCCGGG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 1899
ZrmI AGTACT 2 cut(s) 943, 1570
Zsp2I ATGCAT 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.