Rw2G035400

cadmium zinc-transporting ATPase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
58327839 .. 58333046
5208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035400.1

Sequence Viewer

Length: 1332 bp
ATGTCATACAACTCAGCTGTACGTTCTCCAGAGACCATGTTTAGCGTCCAGGTATTTGGTGCTGAGCAGGATCAGGTGGAGGGAGAAAACAAGTCCGCCATGAAGTTGCAGAAAAGTTACTTCGACGTGTTGGGCCTTTGCTGCTCATCCGAAGTTGCTCTGGTGGAGAATATCTTGAAGCCTCTTAATGGTGTTAAAGAGGTCTCCGTCATTCTCCCTTCTAAAACTGTCATTGTCGTCCATGATAGTCACCTCATTTCCCAGATTCAGATTGATGAGGCTATGAATGAAGCAAGGCTAGAATCAAGTGTCAAGGTTCATGTGGAGAATTACAAGAAAAAATGGCCTAGTCCATATGCAATTGCTAGTGGTGTATTGCTGTTCCTATCATTGTTAAAGTATGTATACAGCCCATTACAGTGGTTGGCCCTAGGAGCAGTAGCAGCTGGTATTTTTCCGATTTTAATGAAATGTGTATCTTCGATTCGGAATCTTAAGATTGACATCAACATTCTCGTCATTGTTGCAGTGATTGGAACAATTGCTATGAGTGATTACGTGGAAGCTGGTACTATAGTCTTCCTGTTCACCATTGCAGAGTGGCTTGAATCCAGGTCACGTCATAAGGCAAATGCAGTGATGTCATCTTTGATGAGCATGGCCCCCCAAAAAGCTGTCCTAGCATCGACAGGAGATATTGTGGATGTTGATATGGTTGAGTTGAATACAATTCTTGCTGTTAAGGCTGGTGAAGTTATACCAATTGATGGAATTGTTGTGGAAGGCGAAGCTGAAGTGGATGAGAAGACGCTAACTGGAGAGTCATATCCAGTTGCTAAACTAAAGGACTCCACTGTCTGGGCTGGCACTGTCAATCTCAATGGTTACATTAGTGTCAAAACTACAGCCTTAGCTGGAGATTGTGTGGTTGCTGAAATGGCTAAACTTGTGGAAGAGGCCCAGAACAGAAAATCCAAAACTCAAAGATTTGTTGATAAGTTTGCAAAGTTCTACACTCCAGCGGTCCTATTCGTATCTGTTTCTGTTGCGGTGATTCCAGCTGCTTTACATGTTCCTAATTGGAGCAAATGGTTTCACTTAGCTTTGGTAGTTTTAGTGAGTGCTTGTCCATGTGCTCTTATCCTCTCTACACCTGTTGTAACTTTCTGCACACTTACGCATGCTGCAACATCTGGCCTTTTAATCAAAGGGGGTGACTACCTCGAAATTCTTGGCAAAATCAAGACTATGTGTTTTGACAAAACTGGTACAATAACAAGTGGGGAGTTTTTCGTGATGGATTTTCAATCTCTTCGCGAGACATCAGCTTGA

Protein Analysis

443

Amino Acids

48.06

Weight (kDa)

5.75

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 232 - 318 1.1e-20 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 854
AccB7I CCANNNNNTGG 2 cut(s) 767, 858
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 1317
AciI CCGC 3 cut(s) 96, 1022, 1049
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 1227
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 3 cut(s) 21, 571, 1270
AfiI CCNNNNNNNGG 3 cut(s) 188, 767, 858
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 2 cut(s) 126, 1069
AgsI TTSAA 4 cut(s) 178, 608, 724, 1307
AjiI CACGTC 2 cut(s) 127, 620
AjnI CCWGG 2 cut(s) 48, 611
AloI GAACNNNNNNTCC 2 cut(s) 956, 988
AluBI AGCT 9 cut(s) 17, 446, 566, 674, 791, 914, 1061, 1103, 1328
AluI AGCT 9 cut(s) 17, 446, 566, 674, 791, 914, 1061, 1103, 1328
Alw21I GWGCWC 1 cut(s) 1138
Alw26I GTCTC 3 cut(s) 26, 208, 1313
AlwI GGATC 1 cut(s) 78
AoxI GGCC 6 cut(s) 133, 344, 426, 660, 957, 1195
ApeKI GCWGC 4 cut(s) 141, 443, 1061, 1184
ApoI RAATTY 1 cut(s) 1227
AspA2I CCTAGG 1 cut(s) 430
AspS9I GGNCC 5 cut(s) 133, 427, 661, 958, 1024
AsuHPI GGTGA 5 cut(s) 242, 580, 761, 1063, 1226
AvaII GGWCC 1 cut(s) 1024
AvrII CCTAGG 1 cut(s) 430
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BbsI GAAGAC 2 cut(s) 571, 812
Bbv12I GWGCWC 1 cut(s) 1138
BbvI GCAGC 4 cut(s) 128, 455, 1048, 1171
BccI CCATC 2 cut(s) 761, 1291
BciT130I CCWGG 2 cut(s) 50, 613
BcoDI GTCTC 3 cut(s) 26, 208, 1313
BfaI CTAG 5 cut(s) 299, 348, 366, 431, 680
BfmI CTRYAG 2 cut(s) 573, 903
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 4 cut(s) 142, 444, 1062, 1185
BlnI CCTAGG 1 cut(s) 430
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 4 cut(s) 143, 445, 1063, 1186
Bme1390I CCNGG 2 cut(s) 50, 613
Bme18I GGWCC 1 cut(s) 1024
BmgBI CACGTC 2 cut(s) 127, 620
BmgT120I GGNCC 5 cut(s) 133, 427, 661, 958, 1024
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 2 cut(s) 50, 613
BmsI GCATC 1 cut(s) 692
BpiI GAAGAC 2 cut(s) 571, 812
BpmI CTGGAG 4 cut(s) 12, 837, 936, 1002
Bpu10I CCTNAGC 1 cut(s) 910
Bpu1102I GCTNAGC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 503
BsaI GGTCTC 2 cut(s) 26, 208
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 4 cut(s) 684, 714, 909, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 767, 858
Bse1I ACTGG 3 cut(s) 820, 830, 1270
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 503
BseBI CCWGG 2 cut(s) 50, 613
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 3 cut(s) 146, 709, 805
BseJI GATNNNNATC 1 cut(s) 503
BseLI CCNNNNNNNGG 3 cut(s) 188, 767, 858
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 27, 54
BseNI ACTGG 3 cut(s) 820, 830, 1270
BseXI GCAGC 4 cut(s) 128, 455, 1048, 1171
BsgI GTGCAG 1 cut(s) 1153
Bsh1236I CGCG 1 cut(s) 1317
BshFI GGCC 6 cut(s) 135, 346, 428, 662, 959, 1197
BsiHKAI GWGCWC 1 cut(s) 1138
BslI CCNNNNNNNGG 3 cut(s) 188, 767, 858
BsmAI GTCTC 3 cut(s) 26, 208, 1313
BsnI GGCC 6 cut(s) 135, 346, 428, 662, 959, 1197
Bso31I GGTCTC 2 cut(s) 26, 208
Bsp1286I GDGCHC 1 cut(s) 1138
Bsp143I GATC 1 cut(s) 70
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp68I TCGCGA 1 cut(s) 1317
BspACI CCGC 3 cut(s) 96, 1022, 1049
BspANI GGCC 6 cut(s) 135, 346, 428, 662, 959, 1197
BspCNI CTCAG 2 cut(s) 26, 55
BspFNI CGCG 1 cut(s) 1317
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 26, 208
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 3 cut(s) 820, 830, 1270
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 1 cut(s) 70
BssNAI GTATAC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 430
Bst1107I GTATAC 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 50, 613
Bst4CI ACNGT 4 cut(s) 229, 420, 856, 871
Bst6I CTCTTC 2 cut(s) 948, 1317
BstAFI CTTAAG 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 865, 1182
BstDEI CTNAG 4 cut(s) 13, 63, 910, 1099
BstF5I GGATG 3 cut(s) 146, 709, 805
BstFNI CGCG 1 cut(s) 1317
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 3 cut(s) 26, 208, 1313
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 6 cut(s) 141, 434, 443, 680, 743, 938
BstNI CCWGG 2 cut(s) 50, 613
BstNSI RCATGY 2 cut(s) 1073, 1184
BstSCI CCNGG 2 cut(s) 48, 611
BstSFI CTRYAG 2 cut(s) 573, 903
BstUI CGCG 1 cut(s) 1317
BstV1I GCAGC 4 cut(s) 128, 455, 1048, 1171
BstV2I GAAGAC 2 cut(s) 571, 812
BstXI CCANNNNNNTGG 2 cut(s) 56, 420
BstZ17I GTATAC 1 cut(s) 406
BsuRI GGCC 6 cut(s) 135, 346, 428, 662, 959, 1197
BtrI CACGTC 2 cut(s) 127, 620
BtsCI GGATG 3 cut(s) 146, 709, 805
BtsI GCAGTG 2 cut(s) 534, 642
BtsIMutI CAGTG 5 cut(s) 425, 534, 642, 852, 867
BtuMI TCGCGA 1 cut(s) 1317
Cac8I GCNNGC 2 cut(s) 865, 1182
Cfr13I GGNCC 5 cut(s) 133, 427, 661, 958, 1024
CseI GACGC 2 cut(s) 34, 817
Csp6I GTAC 3 cut(s) 20, 570, 1269
CviAII CATG 8 cut(s) 37, 100, 242, 320, 658, 1070, 1131, 1181
CviQI GTAC 3 cut(s) 20, 570, 1269
DdeI CTNAG 4 cut(s) 13, 63, 910, 1099
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 854
DseDI GACNNNNNNGTC 1 cut(s) 854
Eam1104I CTCTTC 2 cut(s) 948, 1317
EarI CTCTTC 2 cut(s) 948, 1317
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 2 cut(s) 26, 208
Eco47I GGWCC 1 cut(s) 1024
Eco57I CTGAAG 1 cut(s) 813
EcoRII CCWGG 2 cut(s) 48, 611
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 8 cut(s) 40, 103, 245, 323, 661, 1073, 1134, 1184
FatI CATG 8 cut(s) 36, 99, 241, 319, 657, 1069, 1130, 1180
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 142, 444, 1062, 1185
FokI GGATG 3 cut(s) 133, 716, 812
Fsp4HI GCNGC 4 cut(s) 142, 444, 1062, 1185
FspBI CTAG 5 cut(s) 299, 348, 366, 431, 680
GluI GCNGC 4 cut(s) 142, 444, 1062, 1185
GsuI CTGGAG 4 cut(s) 12, 837, 936, 1002
HaeIII GGCC 6 cut(s) 135, 346, 428, 662, 959, 1197
HgaI GACGC 2 cut(s) 34, 817
Hin1II CATG 8 cut(s) 40, 103, 245, 323, 661, 1073, 1134, 1184
HinfI GANTC 8 cut(s) 265, 302, 484, 490, 608, 821, 848, 1054
HphI GGTGA 5 cut(s) 242, 580, 761, 1063, 1226
Hpy166II GTNNAC 2 cut(s) 406, 588
Hpy188I TCNGA 4 cut(s) 151, 270, 459, 489
Hpy188III TCNNGA 5 cut(s) 29, 175, 1243, 1294, 1316
Hpy8I GTNNAC 2 cut(s) 406, 588
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 228, 776
HpyCH4III ACNGT 4 cut(s) 229, 420, 856, 871
HpyCH4IV ACGT 4 cut(s) 22, 126, 558, 619
HpyCH4V TGCA 8 cut(s) 109, 359, 527, 596, 635, 1004, 1170, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 434, 443, 680, 743, 938
HpyF3I CTNAG 4 cut(s) 13, 63, 910, 1099
HpySE526I ACGT 4 cut(s) 22, 126, 558, 619
Hsp92II CATG 8 cut(s) 40, 103, 245, 323, 661, 1073, 1134, 1184
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 434, 1083
Lsp1109I GCAGC 4 cut(s) 128, 455, 1048, 1171
LweI GCATC 1 cut(s) 692
MaeI CTAG 5 cut(s) 299, 348, 366, 431, 680
MaeII ACGT 4 cut(s) 22, 126, 558, 619
MaeIII GTNAC 6 cut(s) 116, 248, 615, 884, 1159, 1214
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 5 cut(s) 471, 571, 817, 965, 1304
MfeI CAATTG 3 cut(s) 360, 540, 762
MhlI GDGCHC 1 cut(s) 1138
MluCI AATT 8 cut(s) 328, 360, 540, 729, 762, 771, 1078, 1227
MlyI GAGTC 2 cut(s) 830, 842
MnlI CCTC 8 cut(s) 73, 192, 193, 263, 271, 949, 1154, 1232
MseI TTAA 7 cut(s) 186, 195, 395, 464, 495, 741, 1202
MslI CAYNNNNRTG 1 cut(s) 418
MspA1I CMGCKG 4 cut(s) 17, 446, 1022, 1061
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 50, 613
MunI CAATTG 3 cut(s) 360, 540, 762
MvaI CCWGG 2 cut(s) 50, 613
MvnI CGCG 1 cut(s) 1317
MwoI GCNNNNNNNGC 6 cut(s) 141, 434, 443, 680, 743, 938
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 70
NlaIII CATG 8 cut(s) 40, 103, 245, 323, 661, 1073, 1134, 1184
NlaIV GGNNCC 1 cut(s) 663
NmuCI GTSAC 3 cut(s) 248, 615, 1214
NruI TCGCGA 1 cut(s) 1317
NspI RCATGY 2 cut(s) 1073, 1184
PaeI GCATGC 1 cut(s) 1184
PciI ACATGT 1 cut(s) 1069
PfeI GAWTC 6 cut(s) 265, 302, 484, 490, 608, 1054
PflMI CCANNNNNTGG 2 cut(s) 767, 858
PkrI GCNGC 4 cut(s) 143, 445, 1063, 1186
PleI GAGTC 2 cut(s) 829, 842
PpsI GAGTC 2 cut(s) 829, 842
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 1 cut(s) 1069
Psp6I CCWGG 2 cut(s) 48, 611
PspGI CCWGG 2 cut(s) 48, 611
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 5 cut(s) 133, 427, 661, 958, 1024
PvuII CAGCTG 3 cut(s) 17, 446, 1061
RruI TCGCGA 1 cut(s) 1317
RsaI GTAC 3 cut(s) 21, 571, 1270
RsaNI GTAC 3 cut(s) 20, 570, 1269
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 7 cut(s) 186, 195, 395, 464, 495, 741, 1202
SatI GCNGC 4 cut(s) 142, 444, 1062, 1185
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 5 cut(s) 133, 427, 661, 958, 1024
SchI GAGTC 2 cut(s) 830, 842
ScrFI CCNGG 2 cut(s) 50, 613
SduI GDGCHC 1 cut(s) 1138
SfaNI GCATC 1 cut(s) 692
SfcI CTRYAG 2 cut(s) 573, 903
SinI GGWCC 1 cut(s) 1024
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SphI GCATGC 1 cut(s) 1184
Sse9I AATT 8 cut(s) 328, 360, 540, 729, 762, 771, 1078, 1227
SsiI CCGC 3 cut(s) 96, 1022, 1049
SspMI CTAG 5 cut(s) 299, 348, 366, 431, 680
StyD4I CCNGG 2 cut(s) 48, 611
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 229, 420, 856, 871
TaiI ACGT 4 cut(s) 25, 129, 561, 622
TaqI TCGA 4 cut(s) 123, 482, 686, 1224
TasI AATT 8 cut(s) 328, 360, 540, 729, 762, 771, 1078, 1227
TfiI GAWTC 6 cut(s) 265, 302, 484, 490, 608, 1054
Tru1I TTAA 7 cut(s) 186, 195, 395, 464, 495, 741, 1202
Tru9I TTAA 7 cut(s) 186, 195, 395, 464, 495, 741, 1202
TscAI CASTG 5 cut(s) 425, 534, 642, 859, 874
TseFI GTSAC 3 cut(s) 248, 615, 1214
TseI GCWGC 4 cut(s) 141, 443, 1061, 1184
Tsp45I GTSAC 3 cut(s) 248, 615, 1214
TspDTI ATGAA 5 cut(s) 116, 299, 303, 308, 482
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 5 cut(s) 425, 534, 642, 859, 874
Van91I CCANNNNNTGG 2 cut(s) 767, 858
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 1024
XapI RAATTY 1 cut(s) 1227
XceI RCATGY 2 cut(s) 1073, 1184
XmaJI CCTAGG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 5 cut(s) 299, 348, 366, 431, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.