FvH4_6g33970

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26883512 .. 26886093
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33970.t1

Sequence Viewer

Length: 237 bp
ATGGCGGAAGGAAAGCCAGAGCTCAAAGACTCTGTTTCAGGACATCACGCTGAGAAATCACCACGTCATGACAAAGAAACGCATGGAACGAGTGATGACATTGATGAGAACACCCCAATTGATGTAGTGAAAGGACCAAGTGTGTTTGAAAGGATCAAGGAAGAAGTCGAAGCTGTTGTGGAGGCCGTAATTCATCCTCACAAAGATTCTGATAGTCATGACTCTTCTTCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.57

Weight (kDa)

5.07

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 149
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 2 cut(s) 22, 173
AluI AGCT 2 cut(s) 22, 173
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 134
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 24
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 2 cut(s) 67, 217
BspPI GGATC 1 cut(s) 161
BssMI GATC 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 51, 231
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 185
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 193
CciI TCATGA 2 cut(s) 67, 217
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 3 cut(s) 68, 83, 218
CviJI RGCY 4 cut(s) 16, 22, 173, 185
CviKI_1 RGCY 4 cut(s) 16, 22, 173, 185
DdeI CTNAG 2 cut(s) 51, 231
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 3 cut(s) 71, 86, 221
FaiI YATR 3 cut(s) 69, 84, 219
FatI CATG 3 cut(s) 67, 82, 217
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 3 cut(s) 71, 86, 221
HinfI GANTC 3 cut(s) 29, 206, 221
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 39, 68, 218
HpyCH4IV ACGT 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 51, 231
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 3 cut(s) 71, 86, 221
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 2 cut(s) 24, 30
MaeII ACGT 1 cut(s) 64
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 3 cut(s) 173, 216, 219
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 117, 189
MlyI GAGTC 2 cut(s) 23, 215
MnlI CCTC 2 cut(s) 175, 207
MunI CAATTG 1 cut(s) 117
NdeII GATC 1 cut(s) 153
NlaIII CATG 3 cut(s) 71, 86, 221
PagI TCATGA 2 cut(s) 67, 217
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 1 cut(s) 206
PleI GAGTC 2 cut(s) 23, 215
PpsI GAGTC 2 cut(s) 23, 215
Psp124BI GAGCTC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 134
SacI GAGCTC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 23, 215
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 24, 67, 175
SinI GGWCC 1 cut(s) 134
Sse9I AATT 2 cut(s) 117, 189
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 1 cut(s) 24
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 117, 189
TfiI GAWTC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.