Rw3G008170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002922
Physical Location & Seq
Reverse (-)
7587713 .. 7590200
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008170.1

Sequence Viewer

Length: 549 bp
ATGTTGCATCACAAAGACGAATCAAATCACCATCACGAGGAAACTCATGGTTTGCGTAAAGACATTGATGAGAAGACCCCATTAGAGGAAGTTAAAGCTCCAAATGTGTTTGAGCGAGCAAAGGAGGAGTTCGAGGCTATAGTTGAAGCAATTCATTCCAAGAAGGAATCTGATTCGAGTGTTGAAATTAAAAAGGAGTCAAAGCAGGACAAAGCTGAATCAAAATCAAAAAATAATGGCAACTCACCTAGATTTGTAGATTATGCCAAGGGAAAGATTAAAACAATCATGCACCATGACAAGTCGCCAAAGCTTCACAACGAAAAAGCTTCACAACAATTGATAAACGTGGAGCCCCTCTGCCTTTTTTTTTTTTTTTTTTTTAAAAAAAAAACTCACGGGACGAGTGATGACATTGACAATACTACCCCAGTGGATCACGTCAAGGCTCCCAATGTCTTTGAAAGAGCAAAGGAAGAAATCGAGGCCATTGTCCAGACGATTCATCCCAAGAAAGAAGAGAAGAATTCAGTCTCCCCACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.97

Weight (kDa)

6.68

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 37, 85
AgsI TTSAA 3 cut(s) 146, 185, 464
AjiI CACGTC 1 cut(s) 442
AluBI AGCT 4 cut(s) 98, 215, 313, 329
AluI AGCT 4 cut(s) 98, 215, 313, 329
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 1 cut(s) 444
AoxI GGCC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 20, 237
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 354, 450
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 85
Bse1I ACTGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 2 cut(s) 37, 85
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 488
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 37, 85
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 436
BspANI GGCC 1 cut(s) 488
BspLI GGNNCC 2 cut(s) 354, 450
BspPI GGATC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 436
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 488
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 3 cut(s) 47, 289, 296
CviJI RGCY 8 cut(s) 98, 137, 215, 313, 329, 355, 449, 488
CviKI_1 RGCY 8 cut(s) 98, 137, 215, 313, 329, 355, 449, 488
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 50, 292, 299
FaiI YATR 5 cut(s) 48, 140, 264, 290, 297
FaqI GGGAC 1 cut(s) 415
FatI CATG 3 cut(s) 46, 288, 295
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 1 cut(s) 357
FspBI CTAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 488
Hin1II CATG 3 cut(s) 50, 292, 299
HindIII AAGCTT 2 cut(s) 311, 327
HinfI GANTC 6 cut(s) 20, 167, 173, 197, 218, 502
HphI GGTGA 2 cut(s) 20, 237
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 35, 496
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 348, 441
HpyCH4V TGCA 2 cut(s) 7, 292
HpySE526I ACGT 2 cut(s) 348, 441
Hsp92II CATG 3 cut(s) 50, 292, 299
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 103, 352, 454
LpnPI CCDG 3 cut(s) 191, 444, 509
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 249
MaeII ACGT 2 cut(s) 348, 441
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 4 cut(s) 85, 488, 530, 535
MfeI CAATTG 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 150, 186, 338, 526
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 6 cut(s) 31, 79, 118, 127, 368, 478
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 4 cut(s) 93, 189, 279, 384
MunI CAATTG 1 cut(s) 338
NdeII GATC 1 cut(s) 436
NlaIII CATG 3 cut(s) 50, 292, 299
NlaIV GGNNCC 2 cut(s) 354, 450
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 5 cut(s) 20, 167, 173, 218, 502
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 354, 450
SaqAI TTAA 4 cut(s) 93, 189, 279, 384
Sau3AI GATC 1 cut(s) 436
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 357
SetI ASST 7 cut(s) 100, 217, 250, 315, 331, 351, 444
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 138
Sse9I AATT 4 cut(s) 150, 186, 338, 526
SspMI CTAG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 267
TaiI ACGT 2 cut(s) 351, 444
TaqI TCGA 3 cut(s) 132, 176, 483
TasI AATT 4 cut(s) 150, 186, 338, 526
TfiI GAWTC 5 cut(s) 20, 167, 173, 218, 502
Tru1I TTAA 4 cut(s) 93, 189, 279, 384
Tru9I TTAA 4 cut(s) 93, 189, 279, 384
TscAI CASTG 1 cut(s) 438
TspDTI ATGAA 2 cut(s) 143, 494
TspRI CASTG 1 cut(s) 438
XapI RAATTY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.