Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002922

Physical Location & Seq

Genomic Coordinates Reverse (-)

6431365 .. 6433305

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1082200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGAATCCAAACCTGGACCAGCTCAAGCTCCACCTGATAAGGAAGTAAAGGGGCCTAATTTGATTGAAAGAGCAAAGGATGAGACGGGGGCAGTGTTGCACACTGATAAAATACATCATGATCACAAGGAAACTCATGGATTGCGTGACGATATCGATGAGAAAACCCCACTGGACGATGTCAAGGCTCCGAATATGTTCGAGAGGGCGAAGGAGGAGTTTGAGGCCATAGTTGAAGCAATCCATCCCAAGAAAGAGTCTCCCACGTATGGAAAAATGGACGAAAGCAAAAAGGATTCGAAGAAACAGGAAAAAGCTGATTCTCTACCAGAAAATCATGCCAAGACATCCAATTTGATTGAGAAAGCCAAGCAAAAGATTGAGACATTGATGCACCATGAAAACTCGCCAAAGAATCATGATAACGAAACTCCTGAGAAGTCACCGAAGCATCATACTAAAGAAACTCATGGAAGGAGTGATGACATTGACGAGAGTATCCCAATTGATCATGTCAAGGCTCCGAATGTTTTTGAAAGAGCGAAAGAGGAAATCGAGGCCATTTTCGAAGCAATCCATCCCAAGAAAGAAGAGAAAACTTCGGTTTCCACTCCTAAGAAGGAAGGTGGGTTTGGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.13

Weight (kDa)

5.85

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17490 AT1G72690
fragaria_vesca	FvH4_1g07820 FvH4_6g33970
malus_domestica	MD02G1082200.v1.1 MD09G1190500.v1.1 MD13G1283500.v1.1 MD15G1209800.v1.1
prunus_persica	Prupe.3G046400_v2.0.a1 Prupe.7G206700_v2.0.a1
pyrus_communis	pycom02g06510 pycom09g10690 pycom15g18590
rosa_chinensis	RchiOBHm_Chr2g0093691 RchiOBHm_Chr2g0144001 RchiOBHm_Chr3g0459511
rosa_laevigata	RLG00000016429
rosa_multiflora	Rmu_sc0014811.1_g000014
rosa_roxburghii	Rroxscaffold_2G00101470 Rroxscaffold_2G00147890
rosa_rugosa	Rorug02G0039000
rosa_samantha	Rh2AG085400 Rh2AG437700 Rh2BG085800 Rh2BG445900 Rh2BG446200 Rh2CG088200 Rh2CG424300 Rh2DG083600 Rh2DG456100 Rh2DG456400 Rh3AG094900 Rh3CG099200 Rh3DG098600
rosa_wichuraiana	Rw0G013880 Rw2G035710 Rw2G035740 Rw3G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	71, 239, 539
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	1 cut(s)	618
AluBI	AGCT	3 cut(s)	26, 32, 320
AluI	AGCT	3 cut(s)	26, 32, 320
Alw26I	GTCTC	3 cut(s)	80, 267, 380
AoxI	GGCC	3 cut(s)	56, 228, 561
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	20, 56
AsuHPI	GGTGA	1 cut(s)	438
AsuII	TTCGAA	2 cut(s)	302, 570
AvaII	GGWCC	1 cut(s)	20
BaeI	ACNNNNGTAYC	2 cut(s)	484, 517
BccI	CCATC	2 cut(s)	255, 588
BciT130I	CCWGG	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	2 cut(s)	124, 511
BcoDI	GTCTC	3 cut(s)	80, 267, 380
BfuI	GTATCC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	20, 56
BmiI	GGNNCC	3 cut(s)	57, 192, 525
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	384, 463
Bpu14I	TTCGAA	2 cut(s)	302, 570
BpuEI	CTTGAG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	159
BseGI	GGATG	4 cut(s)	88, 247, 350, 580
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	58, 230, 563
BshVI	ATCGAT	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	3 cut(s)	80, 267, 380
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	58, 230, 563
Bsp119I	TTCGAA	2 cut(s)	302, 570
Bsp143I	GATC	2 cut(s)	124, 511
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	58, 230, 563
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	159
BspHI	TCATGA	2 cut(s)	121, 421
BspLI	GGNNCC	3 cut(s)	57, 192, 525
BspT104I	TTCGAA	2 cut(s)	302, 570
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	124, 511
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	270
BstBI	TTCGAA	2 cut(s)	302, 570
BstDEI	CTNAG	2 cut(s)	438, 618
BstF5I	GGATG	4 cut(s)	88, 247, 350, 580
BstKTI	GATC	2 cut(s)	127, 514
BstMAI	GTCTC	3 cut(s)	80, 267, 380
BstMBI	GATC	2 cut(s)	124, 511
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	58, 230, 563
BsuTUI	ATCGAT	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	88, 247, 350, 580
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	102, 105, 173
CciI	TCATGA	2 cut(s)	121, 421
Cfr13I	GGNCC	2 cut(s)	20, 56
ClaI	ATCGAT	1 cut(s)	159
CviAII	CATG	7 cut(s)	122, 140, 341, 401, 422, 473, 515
CviJI	RGCY	9 cut(s)	26, 32, 58, 191, 230, 320, 371, 524, 563
CviKI_1	RGCY	9 cut(s)	26, 32, 58, 191, 230, 320, 371, 524, 563
DdeI	CTNAG	2 cut(s)	438, 618
DpnI	GATC	2 cut(s)	126, 513
DpnII	GATC	2 cut(s)	124, 511
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	7 cut(s)	125, 143, 344, 404, 425, 476, 518
FatI	CATG	7 cut(s)	121, 139, 340, 400, 421, 472, 514
FbaI	TGATCA	2 cut(s)	124, 511
FokI	GGATG	4 cut(s)	95, 234, 337, 567
HaeIII	GGCC	3 cut(s)	58, 230, 563
Hin1II	CATG	7 cut(s)	125, 143, 344, 404, 425, 476, 518
HinfI	GANTC	5 cut(s)	8, 260, 299, 323, 418
HphI	GGTGA	1 cut(s)	438
Hpy188I	TCNGA	2 cut(s)	195, 528
Hpy188III	TCNNGA	4 cut(s)	122, 205, 422, 437
HpyAV	CCTTC	4 cut(s)	208, 471, 616, 620
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	103, 397
HpyF3I	CTNAG	2 cut(s)	438, 618
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	7 cut(s)	125, 143, 344, 404, 425, 476, 518
Ksp22I	TGATCA	2 cut(s)	124, 511
Kzo9I	GATC	2 cut(s)	124, 511
LmnI	GCTCC	3 cut(s)	37, 196, 529
LpnPI	CCDG	8 cut(s)	3, 30, 36, 51, 161, 296, 345, 450
LweI	GCATC	2 cut(s)	384, 463
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	149, 444
MalI	GATC	2 cut(s)	126, 513
MboI	GATC	2 cut(s)	124, 511
MboII	GAAGA	2 cut(s)	316, 605
MfeI	CAATTG	1 cut(s)	507
MluCI	AATT	3 cut(s)	61, 355, 507
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	5 cut(s)	201, 211, 220, 544, 553
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	124, 511
NlaIII	CATG	7 cut(s)	125, 143, 344, 404, 425, 476, 518
NlaIV	GGNNCC	3 cut(s)	57, 192, 525
NmuCI	GTSAC	2 cut(s)	149, 444
NspV	TTCGAA	2 cut(s)	302, 570
PagI	TCATGA	2 cut(s)	121, 421
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	8, 299, 323, 418
PflFI	GACNNNGTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	57, 192, 525
PspPI	GGNCC	2 cut(s)	20, 56
PsyI	GACNNNGTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	643
Sau3AI	GATC	2 cut(s)	124, 511
Sau96I	GGNCC	2 cut(s)	20, 56
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	7 cut(s)	19, 28, 34, 40, 272, 322, 631
SfaNI	GCATC	2 cut(s)	384, 463
SfuI	TTCGAA	2 cut(s)	302, 570
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	61, 355, 507
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	5 cut(s)	159, 204, 302, 558, 570
TasI	AATT	3 cut(s)	61, 355, 507
TfiI	GAWTC	4 cut(s)	8, 299, 323, 418
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	3 cut(s)	102, 112, 180
TseFI	GTSAC	2 cut(s)	149, 444
Tsp45I	GTSAC	2 cut(s)	149, 444
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	102, 112, 180
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.