Rw0G013880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00621
OG0002922
Physical Location & Seq
Forward (+)
98839 .. 102475
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013880.1

Sequence Viewer

Length: 561 bp
ATGCAATCCAAGTATCCAACCCTTACCGATAAAGAAGTAAAGGCACCAAATTTGATTGAAAGAGCAAAGGAAGAGGTTGGAGCAATGTTGCATCACAAAGACGAATCAAATCACCATCACGAGGAAACTCATGGTTTGCGTAAAGACATTGATGAGAAGACCCCATTAGAGGGAGTTAAAGCTCCAAATGTGTTTGAGCGAGCAAAGGAGGAGTTCGAGGCTATAGTTGAAGCAATTCATTCCAAGAAGGAATCTGATTCGAGTGTTGAAATTAAAAAGGAGTCAAAGCAGGACAAAGCTGAATCAAAATCAGAAAATACTGGCAACTCACCTAGATTTGTAGATTATGCCAAGGGAAAGATTAAAACAATCATGCACCATGACAAAAAAAAAAAAAAAAAAAAAACTCACGGGACGAGTGATGACATTGACAATACTACCCCAGTGGATCACGTCAAGGCTCCCAATGTCTTTGAAAGAGCAAAGGAAGAAATCGAGGCCATTGTCCAAACGATTCATCCCAAGAAAGAAGAGAAGAATTCAGTCTCCCCACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.17

Weight (kDa)

7.23

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 2 cut(s) 49, 538
AfiI CCNNNNNNNGG 3 cut(s) 121, 169, 170
AgsI TTSAA 4 cut(s) 59, 230, 269, 476
AjiI CACGTC 1 cut(s) 454
AluBI AGCT 2 cut(s) 182, 299
AluI AGCT 2 cut(s) 182, 299
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 1 cut(s) 456
AoxI GGCC 1 cut(s) 498
ApoI RAATTY 2 cut(s) 49, 538
Asp700I GAANNNNTTC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 104, 321
BanI GGYRCC 1 cut(s) 43
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 1 cut(s) 123
BciVI GTATCC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 45, 462
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 169, 170
Bse1I ACTGG 2 cut(s) 325, 443
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 3 cut(s) 121, 169, 170
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 325, 443
BseRI GAGGAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 500
BshNI GGYRCC 1 cut(s) 43
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 121, 169, 170
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 500
Bsp143I GATC 1 cut(s) 448
BspANI GGCC 1 cut(s) 500
BspLI GGNNCC 2 cut(s) 45, 462
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 2 cut(s) 325, 443
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 66, 525
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 500
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 201
CviAII CATG 3 cut(s) 131, 373, 380
CviJI RGCY 5 cut(s) 182, 221, 299, 461, 500
CviKI_1 RGCY 5 cut(s) 182, 221, 299, 461, 500
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 66, 525
EarI CTCTTC 2 cut(s) 66, 525
Eco130I CCWWGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 3 cut(s) 134, 376, 383
FaiI YATR 5 cut(s) 132, 224, 348, 374, 381
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 130, 372, 379
FokI GGATG 1 cut(s) 504
FspBI CTAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 500
Hin1II CATG 3 cut(s) 134, 376, 383
HinfI GANTC 6 cut(s) 104, 251, 257, 281, 302, 514
HphI GGTGA 2 cut(s) 104, 321
Hpy188I TCNGA 2 cut(s) 256, 313
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 4, 91, 376
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 3 cut(s) 134, 376, 383
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 3 cut(s) 80, 187, 466
LpnPI CCDG 3 cut(s) 275, 306, 456
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 453
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 5 cut(s) 83, 169, 500, 542, 547
MluCI AATT 4 cut(s) 49, 234, 270, 538
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 2 cut(s) 41, 58
MnlI CCTC 6 cut(s) 67, 115, 163, 202, 211, 490
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 177, 273, 363
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 134, 376, 383
NlaIV GGNNCC 2 cut(s) 45, 462
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 5 cut(s) 104, 251, 257, 302, 514
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 45, 462
SaqAI TTAA 3 cut(s) 177, 273, 363
Sau3AI GATC 1 cut(s) 448
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 78, 184, 301, 334, 456
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 4 cut(s) 49, 234, 270, 538
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 216, 260, 495
TasI AATT 4 cut(s) 49, 234, 270, 538
TfiI GAWTC 5 cut(s) 104, 251, 257, 302, 514
Tru1I TTAA 3 cut(s) 177, 273, 363
Tru9I TTAA 3 cut(s) 177, 273, 363
TscAI CASTG 1 cut(s) 450
TspDTI ATGAA 2 cut(s) 227, 506
TspRI CASTG 1 cut(s) 450
XapI RAATTY 2 cut(s) 49, 538
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.