Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002922

Physical Location & Seq

Genomic Coordinates Reverse (-)

16817323 .. 16819098

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1209800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAGAATCCAAACCTGGAACAACGCAAGCTCCGCCTGATAAGGAAGTAAAGGCACCTAATTTGCTTGAAAGAGCAAAGGAAGAGATTGAGGGAATGCGGCACACAGACAAATCACATCATGATCACAAGGAAACTCATGGATTGCGAAATGATATCGATGAAAACACCCCGTTAGATGGTGTCAAAGCTCCGAATATGTTCGAGAGAGCGAAGGAGGAGTTTGAGGCCATAGTTGAAGCAATTCATCCCAAGAAAGAGTCTCCCACTCATGGAAAAAAGGACGAAAGTAAAAAGGAGCCGAAAAAACAGGAGAAAGCTGTTTCTCTATCAGAAAATCATGTCAAGATAGCCAGTTTGATTGGGAAAGCCAAGGAGAAGATTGAGACAATGATGCACCATGAGAAGTCGTTGAAGAATCATGATAAAGAAACACACGAGAAGTCACCAAAGCATCATACCAAAGAAACTCACGGAAGGAGTAATGACATTGACGAGAGTATCCCAATCGATCATGTTAAGGGTCCGAATGTTTTTGAAAGAGCAAAGGAGGAAATCGAGGCCATTGTCGAAGCGATCCATCCCAAGAAAGAAGAGAAAAATCCGGTTTCCACACCTAAAAAGGAAGGTGGGTTTGGGGTGTCAATAGGAAGAGGTTTGGAGAAGGTGTGCTCCCCTCATGGAAACAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

6.66

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17490 AT1G72690
fragaria_vesca	FvH4_1g07820 FvH4_6g33970
malus_domestica	MD02G1082200.v1.1 MD09G1190500.v1.1 MD13G1283500.v1.1 MD15G1209800.v1.1
prunus_persica	Prupe.3G046400_v2.0.a1 Prupe.7G206700_v2.0.a1
pyrus_communis	pycom02g06510 pycom09g10690 pycom15g18590
rosa_chinensis	RchiOBHm_Chr2g0093691 RchiOBHm_Chr2g0144001 RchiOBHm_Chr3g0459511
rosa_laevigata	RLG00000016429
rosa_multiflora	Rmu_sc0014811.1_g000014
rosa_roxburghii	Rroxscaffold_2G00101470 Rroxscaffold_2G00147890
rosa_rugosa	Rorug02G0039000
rosa_samantha	Rh2AG085400 Rh2AG437700 Rh2BG085800 Rh2BG445900 Rh2BG446200 Rh2CG088200 Rh2CG424300 Rh2DG083600 Rh2DG456100 Rh2DG456400 Rh3AG094900 Rh3CG099200 Rh3DG098600
rosa_wichuraiana	Rw0G013880 Rw2G035710 Rw2G035740 Rw3G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	2 cut(s)	35, 100
AclWI	GGATC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	179, 272
AgsI	TTSAA	4 cut(s)	71, 239, 415, 539
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	3 cut(s)	32, 191, 320
AluI	AGCT	3 cut(s)	32, 191, 320
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	2 cut(s)	267, 380
AlwI	GGATC	1 cut(s)	571
AoxI	GGCC	2 cut(s)	228, 561
Asp700I	GAANNNNTTC	2 cut(s)	200, 243
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	524
BaeI	ACNNNNGTAYC	2 cut(s)	484, 517
BanI	GGYRCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	674
BccI	CCATC	2 cut(s)	173, 588
BciT130I	CCWGG	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	267, 380
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	3 cut(s)	57, 300, 525
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	384, 463
Bsa29I	ATCGAT	2 cut(s)	159, 510
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 653, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 272
Bse1I	ACTGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	2 cut(s)	159, 510
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	247, 580
BseLI	CCNNNNNNNGG	2 cut(s)	179, 272
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	230, 563
BshNI	GGYRCC	1 cut(s)	55
BshVI	ATCGAT	2 cut(s)	159, 510
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	2 cut(s)	179, 272
BsmAI	GTCTC	2 cut(s)	267, 380
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	230, 563
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	124, 511, 576
BspACI	CCGC	2 cut(s)	35, 100
BspANI	GGCC	2 cut(s)	230, 563
BspDI	ATCGAT	2 cut(s)	159, 510
BspHI	TCATGA	2 cut(s)	121, 421
BspLI	GGNNCC	3 cut(s)	57, 300, 525
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	124, 511, 576
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	3 cut(s)	78, 588, 646
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	247, 580
BstKTI	GATC	3 cut(s)	127, 514, 579
BstMAI	GTCTC	2 cut(s)	267, 380
BstMBI	GATC	3 cut(s)	124, 511, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
Bsu15I	ATCGAT	2 cut(s)	159, 510
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	230, 563
BsuTUI	ATCGAT	2 cut(s)	159, 510
BtsCI	GGATG	2 cut(s)	247, 580
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	2 cut(s)	121, 421
Cfr13I	GGNCC	1 cut(s)	524
ClaI	ATCGAT	2 cut(s)	159, 510
CviAII	CATG	8 cut(s)	122, 140, 272, 341, 401, 422, 515, 680
CviJI	RGCY	8 cut(s)	32, 191, 230, 301, 320, 353, 371, 563
CviKI_1	RGCY	8 cut(s)	32, 191, 230, 301, 320, 353, 371, 563
DpnI	GATC	3 cut(s)	126, 513, 578
DpnII	GATC	3 cut(s)	124, 511, 576
Eam1104I	CTCTTC	3 cut(s)	78, 588, 646
EarI	CTCTTC	3 cut(s)	78, 588, 646
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	8 cut(s)	125, 143, 275, 344, 404, 425, 518, 683
FatI	CATG	8 cut(s)	121, 139, 271, 340, 400, 421, 514, 679
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	234, 567
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	230, 563
HapII	CCGG	1 cut(s)	605
Hin1II	CATG	8 cut(s)	125, 143, 275, 344, 404, 425, 518, 683
HinfI	GANTC	3 cut(s)	8, 260, 418
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	438
Hpy188I	TCNGA	3 cut(s)	195, 334, 528
Hpy188III	TCNNGA	4 cut(s)	122, 205, 346, 422
HpyAV	CCTTC	4 cut(s)	208, 471, 620, 658
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
Hsp92II	CATG	8 cut(s)	125, 143, 275, 344, 404, 425, 518, 683
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 511, 576
LmnI	GCTCC	4 cut(s)	37, 196, 298, 677
LpnPI	CCDG	6 cut(s)	3, 30, 51, 296, 367, 618
LweI	GCATC	2 cut(s)	384, 463
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	3 cut(s)	126, 513, 578
MboI	GATC	3 cut(s)	124, 511, 576
MboII	GAAGA	5 cut(s)	95, 391, 427, 605, 663
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	2 cut(s)	61, 243
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	7 cut(s)	85, 211, 220, 544, 553, 647, 687
MroXI	GAANNNNTTC	2 cut(s)	200, 243
MseI	TTAA	1 cut(s)	519
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	3 cut(s)	124, 511, 576
NlaIII	CATG	8 cut(s)	125, 143, 275, 344, 404, 425, 518, 683
NlaIV	GGNNCC	3 cut(s)	57, 300, 525
NmuCI	GTSAC	1 cut(s)	444
PagI	TCATGA	2 cut(s)	121, 421
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	200, 243
PfeI	GAWTC	2 cut(s)	8, 418
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	57, 300, 525
PspPI	GGNCC	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	124, 511, 576
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	674
SetI	ASST	9 cut(s)	19, 34, 61, 193, 322, 619, 631, 658, 669
SfaNI	GCATC	2 cut(s)	384, 463
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	2 cut(s)	61, 243
SsiI	CCGC	2 cut(s)	35, 100
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	5 cut(s)	159, 204, 510, 558, 570
TasI	AATT	2 cut(s)	61, 243
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	8, 418
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	177, 236
TspGWI	ACGGA	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	200, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.