MD09G1190500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
16652642 .. 16653853
1212 bp
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UTR
Exon/CDS
Intron
MD09G1190500.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGCAGAACCAAAACCAGAGCTCAAGGACTCTCTCTCAGAGAAATCAGCAGGACATCATGGTGATAAATCGCCAAGGCATGACAAAGAAACGCATGGAAGGAGTGATGACATTGATGAGAGCACCTCCATAGATGAAGTGAAAGGGCCAAGTGTGTTTGAACGGGTGAAGGAAGAAGTGGAAGCCGTTGTCGAAGCAGTTATTCATCCTACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.96

Weight (kDa)

5.1

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 2 cut(s) 24, 125
AoxI GGCC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 74, 178
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 24, 125
BceAI ACGGC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 24, 125
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 24, 125
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 205
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 3 cut(s) 59, 80, 95
CviJI RGCY 3 cut(s) 22, 148, 185
CviKI_1 RGCY 3 cut(s) 22, 148, 185
DdeI CTNAG 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 62, 83, 98
FaiI YATR 4 cut(s) 60, 81, 96, 131
FatI CATG 3 cut(s) 58, 79, 94
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 3 cut(s) 62, 83, 98
HinfI GANTC 1 cut(s) 29
HphI GGTGA 2 cut(s) 74, 178
Hpy188I TCNGA 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 93, 163
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 3 cut(s) 62, 83, 98
LpnPI CCDG 2 cut(s) 30, 36
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 2 cut(s) 24, 125
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 136
MslI CAYNNNNRTG 1 cut(s) 60
NlaIII CATG 3 cut(s) 62, 83, 98
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 2 cut(s) 24, 125
SetI ASST 2 cut(s) 24, 128
SgeI CNNG 9 cut(s) 29, 37, 63, 71, 87, 92, 107, 162, 176
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 150, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.