Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002922

Physical Location & Seq

Genomic Coordinates Forward (+)

41975245 .. 41976213

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1283500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTCGAGAGAGCGAAGGAGGAGTTTGAGGCCATAGTTGAAGCAATTCATCCCAAGAAAGAGTCTCCCACTCATGGAAAAAAGGACGAAAGTAAAAAGGAGCCGAAAAAACAGGAGAAAGCTGTTTCTCTATCAGAAAATCATGTCAAGATAGCCAGTTTGATTGGGAAAGCCAAGGAGAAGATTGAGACAATGATGCACCATGAGAAGTCGTTGAAGAATCATGATAAAGAAACACACGAGAAGTCACCAAAGCATCATACCAAAGAAACTCACGGAAGGAGTAATGACATTGACGAGAGTATCCCAATCGATCATGTTAAGGGTCCGAATGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.99

Weight (kDa)

7.99

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17490 AT1G72690
fragaria_vesca	FvH4_1g07820 FvH4_6g33970
malus_domestica	MD02G1082200.v1.1 MD09G1190500.v1.1 MD13G1283500.v1.1 MD15G1209800.v1.1
prunus_persica	Prupe.3G046400_v2.0.a1 Prupe.7G206700_v2.0.a1
pyrus_communis	pycom02g06510 pycom09g10690 pycom15g18590
rosa_chinensis	RchiOBHm_Chr2g0093691 RchiOBHm_Chr2g0144001 RchiOBHm_Chr3g0459511
rosa_laevigata	RLG00000016429
rosa_multiflora	Rmu_sc0014811.1_g000014
rosa_roxburghii	Rroxscaffold_2G00101470 Rroxscaffold_2G00147890
rosa_rugosa	Rorug02G0039000
rosa_samantha	Rh2AG085400 Rh2AG437700 Rh2BG085800 Rh2BG445900 Rh2BG446200 Rh2CG088200 Rh2CG424300 Rh2DG083600 Rh2DG456100 Rh2DG456400 Rh3AG094900 Rh3CG099200 Rh3DG098600
rosa_wichuraiana	Rw0G013880 Rw2G035710 Rw2G035740 Rw3G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	41, 217
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	69, 182
AoxI	GGCC	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	286, 319
BauI	CACGAG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	69, 182
BfuI	GTATCC	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	102, 327
BmsI	GCATC	2 cut(s)	186, 265
Bsa29I	ATCGAT	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	69, 182
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	102, 327
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	69, 182
BstMBI	GATC	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	312
CviAII	CATG	5 cut(s)	74, 143, 203, 224, 317
CviJI	RGCY	5 cut(s)	32, 103, 122, 155, 173
CviKI_1	RGCY	5 cut(s)	32, 103, 122, 155, 173
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	77, 146, 206, 227, 320
FaiI	YATR	7 cut(s)	35, 75, 144, 204, 225, 261, 318
FatI	CATG	5 cut(s)	73, 142, 202, 223, 316
FokI	GGATG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	77, 146, 206, 227, 320
HinfI	GANTC	2 cut(s)	62, 220
HphI	GGTGA	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	136, 330
Hpy188III	TCNNGA	3 cut(s)	7, 148, 224
HpyAV	CCTTC	2 cut(s)	10, 273
HpyCH4V	TGCA	1 cut(s)	199
Hsp92II	CATG	5 cut(s)	77, 146, 206, 227, 320
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	98, 169
LweI	GCATC	2 cut(s)	186, 265
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	193, 229
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	13, 22
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	321
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	5 cut(s)	77, 146, 206, 227, 320
NlaIV	GGNNCC	2 cut(s)	102, 327
NmuCI	GTSAC	1 cut(s)	246
PagI	TCATGA	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	102, 327
PspPI	GGNCC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	71
SetI	ASST	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	186, 265
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	2 cut(s)	6, 312
TasI	AATT	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.