FvH4_6g35210

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27830938 .. 27833594
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35210.t1

Sequence Viewer

Length: 1383 bp
ATGGCTGAACATTTCTCAGAAACCGGAGGATCCGACCCGGAATACGATTCCGATGATTCGTTAAATGACCCGAGTTACAGCACTCTAGAAGAAACCCATGCCAAGTTCTCAAACCTCTCAGTCAAGACTAAATCCAAGACCCGTATTGTGGAGGTTATTGATGTTGAAGAAGAGCCTGATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGATTGATGCTAAAAGCTATGAACATGTCCATAAGATTATTCAAGACAATCAGATTGAGAAAATGAAAGTGGAGCACTGTAAGCTCTACTTGAGGAAGAATGGGTTGAGACTGACCGGCAATAAGGACACGCTCATTCAGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCGGCATCTAGCTTTGTTTTGAATTGTAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTCGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGCGGCACAAGGACTGTTGCAGGGCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAAGGGGAGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACTTTGAGACAGAGGTGGGAAGATGAAGGGGAGAGGCAGAAAGCTTTGATGGAAAAGCACTTAAGGGGATCTCTAGCTAGGTCTGACAGAGAAACACGCGTCCAAGAGAAAGACATGAGAAAAACGCTAAGGACAAATTGGGTTTCAAGAAAGGAGGAGCCAATAAAAAATCAGTCTCAGTTGAACTCAACCTCTACTTTTATATCCCCAGTTCAACCTCATCAATCGTATCCACTTGTTAATCCAGCAAACCTTCATCAATCAGTTGGTCCAGGAAATACAAATAGGGGACGTCATTTGGGATTGTCTACTGATTCTGCAAAACCAGAAACTCTAACTCACCATTTCAAGAAACCAGCCACTCAACCTCGAGATCCACAGTCATGCTTAGTGACTGTAGAGCATGGAAAAGTGACAACTCAACCTCAAGTGAAACAGCATTCACTAATGCAAGATTGGTACTTCAGTCAAGCTTCTCAAAGACAGCCATTAACAATTGTGACCAACTGTCTTCTGACTAGTACACAAGCCCAAAAGCAGGTGTGCCGTCATTATGCTCAGGGCAGATGTTATTATGGTGGCAACTGCAAATTTTCTCATGAAATGAGAGAGAATCACAAAGAAAGGATGGAAGAGAGGCAGCCTTGTAATTATGGAAATAGCTACAATGAGAGGAGGTTCTATAACCCAAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

52.72

Weight (kDa)

8.81

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP PF02037 89 - 124 1.8e-09 SAP domain
DUF7699 PF24766 148 - 234 6.7e-43 Domain of unknown function (DUF7699)
zf-CCCH_4 PF18044 409 - 428 5e-08 CCCH-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1213
AatII GACGTC 1 cut(s) 979
Acc36I ACCTGC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 992
AccII CGCG 1 cut(s) 783
AciI CCGC 3 cut(s) 352, 525, 547
AclWI GGATC 4 cut(s) 24, 37, 760, 1052
AcsI RAATTY 2 cut(s) 1274, 1375
AcuI CTGAAG 1 cut(s) 1132
AcyI GRCGYC 1 cut(s) 976
AfaI GTAC 4 cut(s) 401, 606, 1145, 1207
AfiI CCNNNNNNNGG 4 cut(s) 148, 524, 658, 1222
AflII CTTAAG 1 cut(s) 745
AflIII ACRYGT 2 cut(s) 235, 781
AgeI ACCGGT 1 cut(s) 675
AhdI GACNNNNNGTC 1 cut(s) 1191
AhlI ACTAGT 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 500, 955
AluBI AGCT 9 cut(s) 205, 228, 295, 414, 564, 728, 761, 1157, 1347
AluI AGCT 9 cut(s) 205, 228, 295, 414, 564, 728, 761, 1157, 1347
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 3 cut(s) 313, 685, 864
AlwI GGATC 4 cut(s) 24, 37, 760, 1052
Ama87I CYCGRG 2 cut(s) 70, 1053
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 3 cut(s) 572, 583, 1324
ApoI RAATTY 2 cut(s) 1274, 1375
AsiGI ACCGGT 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 515, 953
AsuC2I CCSGG 2 cut(s) 38, 404
AsuHPI GGTGA 3 cut(s) 401, 446, 1016
AsuII TTCGAA 1 cut(s) 465
AvaI CYCGRG 2 cut(s) 70, 1053
AvaII GGWCC 1 cut(s) 953
BaeI ACNNNNGTAYC 2 cut(s) 1135, 1168
BamHI GGATCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 559, 595, 1336
BccI CCATC 3 cut(s) 173, 727, 1306
BceAI ACGGC 1 cut(s) 1215
BciT130I CCWGG 2 cut(s) 502, 957
BciVI GTATCC 1 cut(s) 924
BcnI CCSGG 2 cut(s) 38, 404
BcoDI GTCTC 3 cut(s) 313, 685, 864
BcuI ACTAGT 1 cut(s) 1202
BfaI CTAG 6 cut(s) 86, 368, 411, 758, 762, 1203
BfmI CTRYAG 1 cut(s) 1080
BfrI CTTAAG 1 cut(s) 745
BfuAI ACCTGC 1 cut(s) 1213
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 4 cut(s) 526, 573, 584, 1325
BlsI GCNGC 4 cut(s) 527, 574, 585, 1326
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 4 cut(s) 38, 404, 502, 957
Bme18I GGWCC 1 cut(s) 953
BmeRI GACNNNNNGTC 1 cut(s) 1191
BmeT110I CYCGRG 2 cut(s) 70, 1053
BmgT120I GGNCC 2 cut(s) 515, 953
BmiI GGNNCC 2 cut(s) 31, 843
BmrFI CCNGG 4 cut(s) 38, 404, 502, 957
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 5 cut(s) 208, 373, 416, 427, 506
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 1187
BpmI CTGGAG 1 cut(s) 631
Bpu10I CCTNAGC 3 cut(s) 201, 812, 1242
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 322, 1095
BpuMI CCSGG 2 cut(s) 38, 404
BsaHI GRCGYC 1 cut(s) 976
BsaWI WCCGGW 2 cut(s) 23, 675
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 524, 658, 1222
Bse118I RCCGGY 3 cut(s) 326, 446, 675
Bse1I ACTGG 1 cut(s) 893
BseBI CCWGG 2 cut(s) 502, 957
BseGI GGATG 3 cut(s) 497, 643, 1317
BseLI CCNNNNNNNGG 4 cut(s) 148, 524, 658, 1222
BseMII CTCAG 5 cut(s) 30, 132, 192, 875, 1256
BseNI ACTGG 1 cut(s) 893
BseRI GAGGAG 3 cut(s) 200, 854, 1372
BseXI GCAGC 3 cut(s) 559, 595, 1336
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 1 cut(s) 516
BshTI ACCGGT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 2 cut(s) 70, 1053
BsiSI CCGG 6 cut(s) 24, 38, 327, 404, 447, 676
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 4 cut(s) 148, 524, 658, 1222
BsmAI GTCTC 3 cut(s) 313, 685, 864
BsmFI GGGAC 1 cut(s) 987
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 1 cut(s) 516
BsoBI CYCGRG 2 cut(s) 70, 1053
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 29, 752, 1057
BspACI CCGC 3 cut(s) 352, 525, 547
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 5 cut(s) 29, 131, 193, 874, 1255
BspFNI CGCG 1 cut(s) 783
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 2 cut(s) 31, 843
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 4 cut(s) 24, 37, 760, 1052
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 745
BsrFI RCCGGY 3 cut(s) 326, 446, 675
BsrI ACTGG 1 cut(s) 893
BssAI RCCGGY 3 cut(s) 326, 446, 675
BssMI GATC 3 cut(s) 29, 752, 1057
BssNI GRCGYC 1 cut(s) 976
Bst2UI CCWGG 2 cut(s) 502, 957
Bst4CI ACNGT 5 cut(s) 290, 538, 1065, 1081, 1193
Bst6I CTCTTC 3 cut(s) 165, 505, 1311
BstACI GRCGYC 1 cut(s) 976
BstAFI CTTAAG 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 7 cut(s) 16, 118, 201, 812, 861, 1072, 1242
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 497, 643, 1317
BstFNI CGCG 1 cut(s) 783
BstKTI GATC 3 cut(s) 32, 755, 1060
BstMAI GTCTC 3 cut(s) 313, 685, 864
BstMBI GATC 3 cut(s) 29, 752, 1057
BstMWI GCNNNNNNNGC 3 cut(s) 292, 349, 522
BstNI CCWGG 2 cut(s) 502, 957
BstNSI RCATGY 2 cut(s) 239, 444
BstSCI CCNGG 4 cut(s) 36, 402, 500, 955
BstSFI CTRYAG 1 cut(s) 1080
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 559, 595, 1336
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 3 cut(s) 29, 752, 1057
BstYI RGATCY 3 cut(s) 29, 752, 1057
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 3 cut(s) 497, 643, 1317
BtsIMutI CAGTG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 1282
Cfr10I RCCGGY 3 cut(s) 326, 446, 675
Cfr13I GGNCC 2 cut(s) 515, 953
CseI GACGC 1 cut(s) 772
Csp6I GTAC 4 cut(s) 400, 605, 1144, 1206
CspAI ACCGGT 1 cut(s) 675
CviAII CATG 9 cut(s) 98, 236, 441, 460, 522, 799, 1068, 1088, 1283
CviQI GTAC 4 cut(s) 400, 605, 1144, 1206
DdeI CTNAG 7 cut(s) 16, 118, 201, 812, 861, 1072, 1242
DpnI GATC 3 cut(s) 31, 754, 1059
DpnII GATC 3 cut(s) 29, 752, 1057
DriI GACNNNNNGTC 1 cut(s) 1191
Eam1104I CTCTTC 3 cut(s) 165, 505, 1311
Eam1105I GACNNNNNGTC 1 cut(s) 1191
EarI CTCTTC 3 cut(s) 165, 505, 1311
EciI GGCGGA 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 953
Eco57I CTGAAG 1 cut(s) 1132
Eco88I CYCGRG 2 cut(s) 70, 1053
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 500, 955
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 9 cut(s) 101, 239, 444, 463, 525, 802, 1071, 1091, 1286
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 987
FatI CATG 9 cut(s) 97, 235, 440, 459, 521, 798, 1067, 1087, 1282
FblI GTMKAC 1 cut(s) 992
Fnu4HI GCNGC 4 cut(s) 526, 573, 584, 1325
FokI GGATG 3 cut(s) 484, 630, 1324
Fsp4HI GCNGC 4 cut(s) 526, 573, 584, 1325
FspBI CTAG 6 cut(s) 86, 368, 411, 758, 762, 1203
GluI GCNGC 4 cut(s) 526, 573, 584, 1325
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 1 cut(s) 516
HapII CCGG 6 cut(s) 24, 38, 327, 404, 447, 676
HgaI GACGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 976
Hin1II CATG 9 cut(s) 101, 239, 444, 463, 525, 802, 1071, 1091, 1286
HindIII AAGCTT 2 cut(s) 726, 1155
HinfI GANTC 5 cut(s) 47, 56, 667, 998, 1297
HpaII CCGG 6 cut(s) 24, 38, 327, 404, 447, 676
HphI GGTGA 3 cut(s) 401, 446, 1016
Hpy166II GTNNAC 2 cut(s) 993, 1208
Hpy188I TCNGA 8 cut(s) 19, 34, 52, 213, 264, 666, 769, 1200
Hpy188III TCNNGA 9 cut(s) 86, 124, 254, 368, 610, 831, 1033, 1055, 1283
Hpy8I GTNNAC 2 cut(s) 993, 1208
HpyAV CCTTC 2 cut(s) 704, 947
HpyCH4III ACNGT 5 cut(s) 290, 538, 1065, 1081, 1193
HpyCH4IV ACGT 1 cut(s) 976
HpyCH4V TGCA 6 cut(s) 440, 444, 542, 1004, 1135, 1272
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 349, 522
HpyF3I CTNAG 7 cut(s) 16, 118, 201, 812, 861, 1072, 1242
HpySE526I ACGT 1 cut(s) 976
Hsp92I GRCGYC 1 cut(s) 976
Hsp92II CATG 9 cut(s) 101, 239, 444, 463, 525, 802, 1071, 1091, 1286
Kzo9I GATC 3 cut(s) 29, 752, 1057
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 283, 361, 612, 841
Lsp1109I GCAGC 3 cut(s) 559, 595, 1336
LweI GCATC 5 cut(s) 208, 373, 416, 427, 506
MaeI CTAG 6 cut(s) 86, 368, 411, 758, 762, 1203
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 4 cut(s) 74, 1075, 1096, 1183
MalI GATC 3 cut(s) 31, 754, 1059
MboI GATC 3 cut(s) 29, 752, 1057
MboII GAAGA 9 cut(s) 101, 179, 182, 319, 406, 522, 716, 1187, 1328
MfeI CAATTG 2 cut(s) 597, 1179
MflI RGATCY 3 cut(s) 29, 752, 1057
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 7 cut(s) 424, 597, 820, 1179, 1274, 1333, 1375
MluI ACGCGT 1 cut(s) 781
MmeI TCCRAC 2 cut(s) 57, 644
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 6 cut(s) 62, 207, 357, 746, 924, 1175
MslI CAYNNNNRTG 1 cut(s) 1066
MspA1I CMGCKG 1 cut(s) 352
MspCI CTTAAG 1 cut(s) 745
MspI CCGG 6 cut(s) 24, 38, 327, 404, 447, 676
MspR9I CCNGG 4 cut(s) 38, 404, 502, 957
MunI CAATTG 2 cut(s) 597, 1179
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 2 cut(s) 502, 957
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 3 cut(s) 292, 349, 522
NciI CCSGG 2 cut(s) 38, 404
NdeII GATC 3 cut(s) 29, 752, 1057
NlaIII CATG 9 cut(s) 101, 239, 444, 463, 525, 802, 1071, 1091, 1286
NlaIV GGNNCC 2 cut(s) 31, 843
NmuCI GTSAC 3 cut(s) 1075, 1096, 1183
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 2 cut(s) 239, 444
NspV TTCGAA 1 cut(s) 465
PaeI GCATGC 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 1053
PagI TCATGA 1 cut(s) 1282
PaqCI CACCTGC 1 cut(s) 1213
PciI ACATGT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 5 cut(s) 47, 56, 667, 998, 1297
PfoI TCCNGGA 2 cut(s) 500, 955
PinAI ACCGGT 1 cut(s) 675
PkrI GCNGC 4 cut(s) 527, 574, 585, 1326
PscI ACATGT 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 500, 955
PspGI CCWGG 2 cut(s) 500, 955
PspN4I GGNNCC 2 cut(s) 31, 843
PspPI GGNCC 2 cut(s) 515, 953
PsuI RGATCY 3 cut(s) 29, 752, 1057
RsaI GTAC 4 cut(s) 401, 606, 1145, 1207
RsaNI GTAC 4 cut(s) 400, 605, 1144, 1206
RseI CAYNNNNRTG 1 cut(s) 1066
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 6 cut(s) 62, 207, 357, 746, 924, 1175
SatI GCNGC 4 cut(s) 526, 573, 584, 1325
Sau3AI GATC 3 cut(s) 29, 752, 1057
Sau96I GGNCC 2 cut(s) 515, 953
ScaI AGTACT 1 cut(s) 606
ScrFI CCNGG 4 cut(s) 38, 404, 502, 957
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 5 cut(s) 208, 373, 416, 427, 506
SfcI CTRYAG 1 cut(s) 1080
Sfr274I CTCGAG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 465
SgrAI CRCCGGYG 1 cut(s) 446
SinI GGWCC 1 cut(s) 953
SlaI CTCGAG 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 1066
SmlI CTYRAG 4 cut(s) 301, 745, 1053, 1110
SmoI CTYRAG 4 cut(s) 301, 745, 1053, 1110
SpeI ACTAGT 1 cut(s) 1202
SphI GCATGC 1 cut(s) 444
Sse9I AATT 7 cut(s) 424, 597, 820, 1179, 1274, 1333, 1375
SsiI CCGC 3 cut(s) 352, 525, 547
SspMI CTAG 6 cut(s) 86, 368, 411, 758, 762, 1203
StyD4I CCNGG 4 cut(s) 36, 402, 500, 955
TaaI ACNGT 5 cut(s) 290, 538, 1065, 1081, 1193
TaiI ACGT 1 cut(s) 979
TaqI TCGA 2 cut(s) 465, 1054
TasI AATT 7 cut(s) 424, 597, 820, 1179, 1274, 1333, 1375
TatI WGTACW 2 cut(s) 604, 1205
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 5 cut(s) 47, 56, 667, 998, 1297
Tru1I TTAA 6 cut(s) 62, 207, 357, 746, 924, 1175
Tru9I TTAA 6 cut(s) 62, 207, 357, 746, 924, 1175
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 3 cut(s) 1075, 1096, 1183
TseI GCWGC 3 cut(s) 572, 583, 1324
Tsp45I GTSAC 3 cut(s) 1075, 1096, 1183
TspDTI ATGAA 7 cut(s) 246, 290, 495, 632, 723, 929, 1299
TspRI CASTG 1 cut(s) 293
Vha464I CTTAAG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 953
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 2 cut(s) 1274, 1375
XbaI TCTAGA 2 cut(s) 85, 367
XceI RCATGY 2 cut(s) 239, 444
XhoI CTCGAG 1 cut(s) 1053
XmiI GTMKAC 1 cut(s) 992
XspI CTAG 6 cut(s) 86, 368, 411, 758, 762, 1203
ZraI GACGTC 1 cut(s) 977
ZrmI AGTACT 1 cut(s) 606
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.