RLG00000020205

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62432611 .. 62435336
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020205

Sequence Viewer

Length: 1446 bp
ATGGCTTCTGTCACCCAGCAATCCAAACATCATCAATATCTTGAAAAGGGTGAAGATTTCTCAGAAAGCGGAGGATCCGACCCGGGATACGATTCCGATGATTCGGTTGAGGACCCGAGTTACAGCACTCTTGAAGAAACCCATGCCCACTTCTCAAACCTATCCATCAACAGTAAATCCAAGGCCCGTATGGTGGAGGTTCTTGATCTTGAATCAGACCTTGATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGAATGATGCTAAAAGCTATGAACATGTCCAAAAGATGATTCAAGACGAACAGATTGGTAAACTGAAAGTGGAGCAATGTAAGCTCTACTTGAGGAAAAATGGGTTGAGACTGACTGGCAATAAGGACACGCTCATTCGGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCTGCATCTAGCTTTGTTTTGAATTGCAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCGCAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGTTTGAAAACCTTAAGACAGAGGTGGGAAGATGAAGGGGAGAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAAAAACTCTGAAGACAAATAGGATTTCAAGAAAGGAGCAAAAAAACAATCAATCTCAGTTGAACTCAGCCTGTACTTTTAAATCATCAGTTCAACCTCATCAATCTTGTTCACTTGTTTATCCCGCAATGCTTCATCATTCATTTGGTCCAGGAAATACAAAAATGGGACCTCAGCAGCTGCGATTGTCTACTGATTCCGCTAAAGCAGCAGCTCAAACTCACCATTCACAGAAACCAGCAAGTCAACCTCAAGATGCAGAGTCAGGCTTATTGATTGTCGATTGTGGAAAAGTGACAACTCAACCTCAAATGAAAAATAGTACACTAATGCAAGATAGGCACTTCAATCAAGCTTCTCAGCACCTGAAGGTTAGCAATTATGACACCATTATGAAATTGCATAGTTATAATGAGTTTATGGGGTTACCACCACCACCAAAGAAGACTTATCAAAAACAGTCATTGACAAGCGTGAATGTACACTCTCTTCCGACTAGTCCACGACGACAAAAGCAGATGTGCCGTCATTATGCTCAGGGCAGATGTTATTATGGAGACAACTGCAAATTTTCCCATGAATTGAGAGAGTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

54.5

Weight (kDa)

9.2

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP PF02037 104 - 139 4.1e-09 SAP domain
DUF7699 PF24766 163 - 249 8.3e-43 Domain of unknown function (DUF7699)
zf-CCCH_4 PF18044 456 - 475 6.6e-10 CCCH-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1257
AccI GTMKAC 1 cut(s) 1037
AciI CCGC 4 cut(s) 69, 397, 972, 1047
AclWI GGATC 3 cut(s) 69, 82, 805
AcsI RAATTY 1 cut(s) 1415
AcuI CTGAAG 2 cut(s) 878, 1235
AfaI GTAC 6 cut(s) 446, 651, 831, 922, 1171, 1329
AfiI CCNNNNNNNGG 4 cut(s) 193, 226, 569, 703
AflII CTTAAG 1 cut(s) 733
AflIII ACRYGT 1 cut(s) 280
AhlI ACTAGT 1 cut(s) 1343
AjnI CCWGG 2 cut(s) 545, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 9 cut(s) 250, 273, 340, 459, 609, 773, 1027, 1061, 1202
AluI AGCT 9 cut(s) 250, 273, 340, 459, 609, 773, 1027, 1061, 1202
Alw26I GTCTC 2 cut(s) 358, 1398
AlwI GGATC 3 cut(s) 69, 82, 805
AlwNI CAGNNNCTG 2 cut(s) 1027, 1213
Ama87I CYCGRG 2 cut(s) 82, 115
AoxI GGCC 3 cut(s) 183, 559, 589
ApeKI GCWGC 6 cut(s) 617, 628, 1024, 1027, 1055, 1058
ApoI RAATTY 1 cut(s) 1415
AspS9I GGNCC 5 cut(s) 112, 184, 560, 995, 1016
AsuC2I CCSGG 2 cut(s) 83, 84
AsuHPI GGTGA 6 cut(s) 4, 62, 446, 491, 679, 1061
AvaI CYCGRG 2 cut(s) 82, 115
AvaII GGWCC 3 cut(s) 112, 995, 1016
BamHI GGATCC 1 cut(s) 74
BarI GAAGNNNNNNTAC 4 cut(s) 813, 845, 1320, 1352
BbsI GAAGAC 2 cut(s) 866, 1298
BbvCI CCTCAGC 1 cut(s) 1020
BbvI GCAGC 6 cut(s) 604, 640, 1014, 1036, 1067, 1070
BccI CCATC 3 cut(s) 173, 218, 772
BceAI ACGGC 1 cut(s) 1356
BciT130I CCWGG 2 cut(s) 547, 999
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 2 cut(s) 83, 84
BcoDI GTCTC 2 cut(s) 358, 1398
BcuI ACTAGT 1 cut(s) 1343
BfaI CTAG 4 cut(s) 413, 456, 807, 1344
BfrI CTTAAG 1 cut(s) 733
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 6 cut(s) 618, 629, 1025, 1028, 1056, 1059
BlsI GCNGC 6 cut(s) 619, 630, 1026, 1029, 1057, 1060
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 83, 84, 547, 999
Bme18I GGWCC 3 cut(s) 112, 995, 1016
BmeT110I CYCGRG 2 cut(s) 82, 115
BmgT120I GGNCC 5 cut(s) 112, 184, 560, 995, 1016
BmiI GGNNCC 3 cut(s) 76, 114, 1017
BmrFI CCNGG 4 cut(s) 83, 84, 547, 999
BmsI GCATC 6 cut(s) 253, 418, 461, 472, 551, 1093
BpiI GAAGAC 2 cut(s) 866, 1298
BplI GAGNNNNNCTC 2 cut(s) 838, 870
BpmI CTGGAG 1 cut(s) 676
Bpu10I CCTNAGC 3 cut(s) 246, 1020, 1383
BpuEI CTTGAG 3 cut(s) 367, 775, 1083
BpuMI CCSGG 2 cut(s) 83, 84
BsaJI CCNNGG 2 cut(s) 82, 180
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 226, 569, 703
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 338, 981
BseBI CCWGG 2 cut(s) 547, 999
BseDI CCNNGG 2 cut(s) 82, 180
BseGI GGATG 2 cut(s) 542, 688
BseLI CCNNNNNNNGG 4 cut(s) 193, 226, 569, 703
BseMI GCAATG 2 cut(s) 338, 981
BseMII CTCAG 7 cut(s) 75, 237, 917, 927, 1034, 1220, 1397
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 6 cut(s) 604, 640, 1014, 1036, 1067, 1070
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 3 cut(s) 185, 561, 591
BsiHKCI CYCGRG 2 cut(s) 82, 115
BsiSI CCGG 3 cut(s) 83, 492, 592
BslFI GGGAC 1 cut(s) 1029
BslI CCNNNNNNNGG 4 cut(s) 193, 226, 569, 703
BsmAI GTCTC 2 cut(s) 358, 1398
BsmFI GGGAC 1 cut(s) 1029
BsnI GGCC 3 cut(s) 185, 561, 591
BsoBI CYCGRG 2 cut(s) 82, 115
Bsp1407I TGTACA 1 cut(s) 1327
Bsp143I GATC 3 cut(s) 74, 205, 797
BspACI CCGC 4 cut(s) 69, 397, 972, 1047
BspANI GGCC 3 cut(s) 185, 561, 591
BspCNI CTCAG 7 cut(s) 74, 238, 916, 926, 1033, 1219, 1396
BspLI GGNNCC 3 cut(s) 76, 114, 1017
BspPI GGATC 3 cut(s) 69, 82, 805
BspTI CTTAAG 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 338, 981
BsrFI RCCGGY 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 1327
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 82, 180
BssMI GATC 3 cut(s) 74, 205, 797
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 547, 999
Bst4CI ACNGT 4 cut(s) 173, 722, 1308, 1443
Bst6I CTCTTC 2 cut(s) 550, 1341
BstAFI CTTAAG 1 cut(s) 733
BstAUI TGTACA 1 cut(s) 1327
BstC8I GCNNGC 2 cut(s) 487, 589
BstDEI CTNAG 7 cut(s) 61, 246, 903, 913, 1020, 1206, 1383
BstEII GGTNACC 1 cut(s) 1272
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 542, 688
BstKTI GATC 3 cut(s) 77, 208, 800
BstMAI GTCTC 2 cut(s) 358, 1398
BstMBI GATC 3 cut(s) 74, 205, 797
BstMWI GCNNNNNNNGC 4 cut(s) 337, 394, 1055, 1186
BstNI CCWGG 2 cut(s) 547, 999
BstNSI RCATGY 2 cut(s) 284, 489
BstPI GGTNACC 1 cut(s) 1272
BstSCI CCNGG 4 cut(s) 81, 82, 545, 997
BstV1I GCAGC 6 cut(s) 604, 640, 1014, 1036, 1067, 1070
BstV2I GAAGAC 2 cut(s) 866, 1298
BstX2I RGATCY 2 cut(s) 74, 797
BstYI RGATCY 2 cut(s) 74, 797
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 3 cut(s) 185, 561, 591
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 542, 688
Cac8I GCNNGC 2 cut(s) 487, 589
CaiI CAGNNNCTG 2 cut(s) 1027, 1213
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 5 cut(s) 112, 184, 560, 995, 1016
Cfr9I CCCGGG 1 cut(s) 82
Csp6I GTAC 6 cut(s) 445, 650, 830, 921, 1170, 1328
CviAII CATG 6 cut(s) 143, 281, 486, 505, 567, 1424
CviQI GTAC 6 cut(s) 445, 650, 830, 921, 1170, 1328
DdeI CTNAG 7 cut(s) 61, 246, 903, 913, 1020, 1206, 1383
DpnI GATC 3 cut(s) 76, 207, 799
DpnII GATC 3 cut(s) 74, 205, 797
DraI TTTAAA 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 550, 1341
EarI CTCTTC 2 cut(s) 550, 1341
EciI GGCGGA 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 3 cut(s) 112, 995, 1016
Eco57I CTGAAG 2 cut(s) 878, 1235
Eco88I CYCGRG 2 cut(s) 82, 115
Eco91I GGTNACC 1 cut(s) 1272
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoO109I RGGNCCY 3 cut(s) 112, 560, 1016
EcoO65I GGTNACC 1 cut(s) 1272
EcoRII CCWGG 2 cut(s) 545, 997
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 6 cut(s) 146, 284, 489, 508, 570, 1427
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 1029
FatI CATG 6 cut(s) 142, 280, 485, 504, 566, 1423
FauI CCCGC 1 cut(s) 979
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 6 cut(s) 618, 629, 1025, 1028, 1056, 1059
FokI GGATG 2 cut(s) 529, 675
Fsp4HI GCNGC 6 cut(s) 618, 629, 1025, 1028, 1056, 1059
FspBI CTAG 4 cut(s) 413, 456, 807, 1344
GluI GCNGC 6 cut(s) 618, 629, 1025, 1028, 1056, 1059
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 676
HaeIII GGCC 3 cut(s) 185, 561, 591
HapII CCGG 3 cut(s) 83, 492, 592
Hin1II CATG 6 cut(s) 146, 284, 489, 508, 570, 1427
HincII GTYRAC 1 cut(s) 1094
HindII GTYRAC 1 cut(s) 1094
HindIII AAGCTT 2 cut(s) 771, 1200
HinfI GANTC 7 cut(s) 92, 101, 212, 295, 712, 1043, 1109
HpaII CCGG 3 cut(s) 83, 492, 592
HphI GGTGA 6 cut(s) 4, 62, 446, 491, 679, 1061
Hpy166II GTNNAC 7 cut(s) 317, 959, 1038, 1094, 1172, 1330, 1349
Hpy188I TCNGA 9 cut(s) 64, 79, 97, 217, 258, 711, 814, 858, 1341
Hpy188III TCNNGA 9 cut(s) 41, 131, 203, 209, 299, 413, 655, 876, 1100
Hpy8I GTNNAC 7 cut(s) 317, 959, 1038, 1094, 1172, 1330, 1349
Hpy99I CGWCG 1 cut(s) 1356
HpyAV CCTTC 3 cut(s) 749, 832, 1210
HpyCH4III ACNGT 4 cut(s) 173, 722, 1308, 1443
HpyCH4V TGCA 8 cut(s) 452, 474, 485, 489, 1106, 1180, 1249, 1413
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 394, 1055, 1186
HpyF3I CTNAG 7 cut(s) 61, 246, 903, 913, 1020, 1206, 1383
Hsp92II CATG 6 cut(s) 146, 284, 489, 508, 570, 1427
Kzo9I GATC 3 cut(s) 74, 205, 797
LmnI GCTCC 4 cut(s) 328, 406, 657, 883
Lsp1109I GCAGC 6 cut(s) 604, 640, 1014, 1036, 1067, 1070
LweI GCATC 6 cut(s) 253, 418, 461, 472, 551, 1093
MaeI CTAG 4 cut(s) 413, 456, 807, 1344
MaeIII GTNAC 5 cut(s) 10, 119, 1141, 1272, 1437
MalI GATC 3 cut(s) 76, 207, 799
MboI GATC 3 cut(s) 74, 205, 797
MboII GAAGA 8 cut(s) 65, 146, 451, 567, 761, 871, 1303, 1328
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 74, 797
MluCI AATT 6 cut(s) 469, 642, 1225, 1244, 1415, 1427
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 3 cut(s) 102, 689, 1364
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 4 cut(s) 252, 402, 734, 927
MslI CAYNNNNRTG 1 cut(s) 1238
MspA1I CMGCKG 1 cut(s) 1027
MspCI CTTAAG 1 cut(s) 733
MspI CCGG 3 cut(s) 83, 492, 592
MspR9I CCNGG 4 cut(s) 83, 84, 547, 999
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 2 cut(s) 547, 999
MwoI GCNNNNNNNGC 4 cut(s) 337, 394, 1055, 1186
NciI CCSGG 2 cut(s) 83, 84
NdeII GATC 3 cut(s) 74, 205, 797
NlaIII CATG 6 cut(s) 146, 284, 489, 508, 570, 1427
NlaIV GGNNCC 3 cut(s) 76, 114, 1017
NmuCI GTSAC 2 cut(s) 10, 1141
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 2 cut(s) 284, 489
PaeI GCATGC 1 cut(s) 489
PciI ACATGT 1 cut(s) 280
PfeI GAWTC 6 cut(s) 92, 101, 212, 295, 712, 1043
PfoI TCCNGGA 2 cut(s) 545, 997
PkrI GCNGC 6 cut(s) 619, 630, 1026, 1029, 1057, 1060
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PpuMI RGGWCCY 2 cut(s) 112, 1016
PscI ACATGT 1 cut(s) 280
PsiI TTATAA 1 cut(s) 1257
Psp5II RGGWCCY 2 cut(s) 112, 1016
Psp6I CCWGG 2 cut(s) 545, 997
PspEI GGTNACC 1 cut(s) 1272
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 545, 997
PspN4I GGNNCC 3 cut(s) 76, 114, 1017
PspPI GGNCC 5 cut(s) 112, 184, 560, 995, 1016
PspPPI RGGWCCY 2 cut(s) 112, 1016
PstNI CAGNNNCTG 2 cut(s) 1027, 1213
PsuI RGATCY 2 cut(s) 74, 797
PvuII CAGCTG 1 cut(s) 1027
RsaI GTAC 6 cut(s) 446, 651, 831, 922, 1171, 1329
RsaNI GTAC 6 cut(s) 445, 650, 830, 921, 1170, 1328
RseI CAYNNNNRTG 1 cut(s) 1238
SaqAI TTAA 4 cut(s) 252, 402, 734, 927
SatI GCNGC 6 cut(s) 618, 629, 1025, 1028, 1056, 1059
Sau3AI GATC 3 cut(s) 74, 205, 797
Sau96I GGNCC 5 cut(s) 112, 184, 560, 995, 1016
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 4 cut(s) 83, 84, 547, 999
SfaNI GCATC 6 cut(s) 253, 418, 461, 472, 551, 1093
SgrAI CRCCGGYG 1 cut(s) 491
SinI GGWCC 3 cut(s) 112, 995, 1016
SmaI CCCGGG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 1238
SmlI CTYRAG 4 cut(s) 346, 733, 790, 1098
SmoI CTYRAG 4 cut(s) 346, 733, 790, 1098
SpeI ACTAGT 1 cut(s) 1343
SphI GCATGC 1 cut(s) 489
Sse9I AATT 6 cut(s) 469, 642, 1225, 1244, 1415, 1427
SsiI CCGC 4 cut(s) 69, 397, 972, 1047
SspMI CTAG 4 cut(s) 413, 456, 807, 1344
StyD4I CCNGG 4 cut(s) 81, 82, 545, 997
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 4 cut(s) 173, 722, 1308, 1443
TaqI TCGA 1 cut(s) 1128
TasI AATT 6 cut(s) 469, 642, 1225, 1244, 1415, 1427
TatI WGTACW 4 cut(s) 649, 920, 1169, 1327
TfiI GAWTC 6 cut(s) 92, 101, 212, 295, 712, 1043
Tru1I TTAA 4 cut(s) 252, 402, 734, 927
Tru9I TTAA 4 cut(s) 252, 402, 734, 927
TseFI GTSAC 2 cut(s) 10, 1141
TseI GCWGC 6 cut(s) 617, 628, 1024, 1027, 1055, 1058
Tsp45I GTSAC 2 cut(s) 10, 1141
TspDTI ATGAA 9 cut(s) 291, 540, 677, 768, 971, 978, 1175, 1256, 1440
TspMI CCCGGG 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 733
VpaK11BI GGWCC 3 cut(s) 112, 995, 1016
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 1415
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 2 cut(s) 284, 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmaI CCCGGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 1037
XspI CTAG 4 cut(s) 413, 456, 807, 1344
ZrmI AGTACT 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.