Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

59561972 .. 59564623

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG438400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCTTCTGTGATGATGTTTGATCTTGAAAAGGGTGAAGATTTCTCAGAAAGCGGAGGATCCGACCCGGGATACGATTCCGATGATTCGGTTGAGGACCCGAGTTACAGCACTCTTGAAGAAACCCATGCCCACTTCTCAAACCTCTCCATCAACAGTAAATCCAAGGCCCGTATGGTGGAGGTTCTTGATCTTGAATATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGAATGATGCTAAAAGCTATGAACATGTCCAAAAGATGATTCAAGACGAACAGATTGGTAAACTGAAAGTGGAGCAATGTAAGCTCTACTTGAGGAAAAATGGGTTGAGACTGACTGGCAATAAGGACACGCTCATTCAGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCTGCATCTAGCTTTGTTTTGAATTGCAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCGCAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACCTTAAGACAGAGGTGGGAAGATGAAGGGGAAAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAGAAACTCTGAAGACAAATAGGATTTCAAGAAAGGAGCAAAAAAACAATCAGTCTCAGTTGAACTCAGCCTCTACTTTTAAATCATCAGTTCAACCTCATCAATCTTGTCCACTTGTTTATCCCGCAATGCTTCATCAATCATTTGGTCCAGGAAATACAAAAATGGGACCTCAGCAGCTGCGATTGTCTACTGATTCCGCTAAAGCAGCAGCTCAAACTCACCATTCACAGAAACCAGCAACTCAACCTCAAGATGCACAGTCAGGCTTATTGATTGTCGATTGTGGAAAAGTGACAACTCAACCTCAAATGAAAAATAGTACACTAATGCAAGATAGGCACTTCAATCAAGCTTCTCAGCACCTGAAGGTTAGCAATTATGACACCGTTATGAAATTGCATAGTTATAATGAGTTCATGGGGTTACCACCACCACCACCAAAGAAGACTTATCAAAAACAGTCATTGACAAGCGTGAACCACTCTCTTCCGACTAGTCCACGACGACAAAAGCAGATGTGCCGTCATTATGCTCAGGGAAGATGTTATTATGGAGACAACTGCAAATTTTCCCATGAATTGAGAGAGTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

473

Amino Acids

53.58

Weight (kDa)

9.14

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	96 - 131	1.5e-09	SAP domain
DUF7699	PF24766	155 - 241	8.1e-43	Domain of unknown function (DUF7699)
zf-CCCH_4	PF18044	448 - 467	6.4e-10	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1233
AccI	GTMKAC	1 cut(s)	1013
AciI	CCGC	4 cut(s)	54, 373, 948, 1023
AclWI	GGATC	3 cut(s)	54, 67, 781
AcsI	RAATTY	1 cut(s)	1391
AcuI	CTGAAG	2 cut(s)	854, 1211
AfaI	GTAC	4 cut(s)	422, 627, 807, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
AflII	CTTAAG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	256
AgeI	ACCGGT	1 cut(s)	696
AhlI	ACTAGT	1 cut(s)	1319
AjnI	CCWGG	2 cut(s)	521, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	9 cut(s)	226, 249, 316, 435, 585, 749, 1003, 1037, 1178
AluI	AGCT	9 cut(s)	226, 249, 316, 435, 585, 749, 1003, 1037, 1178
Alw26I	GTCTC	3 cut(s)	334, 882, 1374
AlwI	GGATC	3 cut(s)	54, 67, 781
AlwNI	CAGNNNCTG	2 cut(s)	1003, 1189
Ama87I	CYCGRG	2 cut(s)	67, 100
AoxI	GGCC	3 cut(s)	168, 535, 565
ApeKI	GCWGC	6 cut(s)	593, 604, 1000, 1003, 1031, 1034
ApoI	RAATTY	1 cut(s)	1391
AsiGI	ACCGGT	1 cut(s)	696
AspS9I	GGNCC	5 cut(s)	97, 169, 536, 971, 992
AsuC2I	CCSGG	2 cut(s)	68, 69
AsuHPI	GGTGA	5 cut(s)	47, 422, 467, 655, 1037
AvaI	CYCGRG	2 cut(s)	67, 100
AvaII	GGWCC	3 cut(s)	97, 971, 992
BamHI	GGATCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	2 cut(s)	842, 1277
BbvCI	CCTCAGC	1 cut(s)	996
BbvI	GCAGC	6 cut(s)	580, 616, 990, 1012, 1043, 1046
BccI	CCATC	2 cut(s)	158, 748
BceAI	ACGGC	1 cut(s)	1332
BciT130I	CCWGG	2 cut(s)	523, 975
BciVI	GTATCC	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	68, 69
BcoDI	GTCTC	3 cut(s)	334, 882, 1374
BcuI	ACTAGT	1 cut(s)	1319
BfaI	CTAG	4 cut(s)	389, 432, 783, 1320
BfrI	CTTAAG	1 cut(s)	709
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	594, 605, 1001, 1004, 1032, 1035
BlsI	GCNGC	6 cut(s)	595, 606, 1002, 1005, 1033, 1036
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	4 cut(s)	68, 69, 523, 975
Bme18I	GGWCC	3 cut(s)	97, 971, 992
BmeT110I	CYCGRG	2 cut(s)	67, 100
BmgT120I	GGNCC	5 cut(s)	97, 169, 536, 971, 992
BmiI	GGNNCC	3 cut(s)	61, 99, 993
BmrFI	CCNGG	4 cut(s)	68, 69, 523, 975
BmsI	GCATC	6 cut(s)	229, 394, 437, 448, 527, 1069
BpiI	GAAGAC	2 cut(s)	842, 1277
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	1 cut(s)	652
Bpu10I	CCTNAGC	3 cut(s)	222, 996, 1359
BpuEI	CTTGAG	3 cut(s)	343, 751, 1059
BpuMI	CCSGG	2 cut(s)	68, 69
BsaJI	CCNNGG	2 cut(s)	67, 165
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 545, 679
Bse118I	RCCGGY	2 cut(s)	467, 696
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	314, 957
BseBI	CCWGG	2 cut(s)	523, 975
BseDI	CCNNGG	2 cut(s)	67, 165
BseGI	GGATG	2 cut(s)	518, 664
BseLI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
BseMI	GCAATG	2 cut(s)	314, 957
BseMII	CTCAG	7 cut(s)	60, 213, 893, 903, 1010, 1196, 1373
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	6 cut(s)	580, 616, 990, 1012, 1043, 1046
BshFI	GGCC	3 cut(s)	170, 537, 567
BshTI	ACCGGT	1 cut(s)	696
BsiHKCI	CYCGRG	2 cut(s)	67, 100
BsiSI	CCGG	4 cut(s)	68, 468, 568, 697
BslFI	GGGAC	1 cut(s)	1005
BslI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
BsmAI	GTCTC	3 cut(s)	334, 882, 1374
BsmFI	GGGAC	1 cut(s)	1005
BsnI	GGCC	3 cut(s)	170, 537, 567
BsoBI	CYCGRG	2 cut(s)	67, 100
Bsp143I	GATC	4 cut(s)	22, 59, 190, 773
BspACI	CCGC	4 cut(s)	54, 373, 948, 1023
BspANI	GGCC	3 cut(s)	170, 537, 567
BspCNI	CTCAG	7 cut(s)	59, 214, 892, 902, 1009, 1195, 1372
BspLI	GGNNCC	3 cut(s)	61, 99, 993
BspPI	GGATC	3 cut(s)	54, 67, 781
BspTI	CTTAAG	1 cut(s)	709
BsrDI	GCAATG	2 cut(s)	314, 957
BsrFI	RCCGGY	2 cut(s)	467, 696
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	2 cut(s)	467, 696
BssECI	CCNNGG	2 cut(s)	67, 165
BssMI	GATC	4 cut(s)	22, 59, 190, 773
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	523, 975
Bst4CI	ACNGT	5 cut(s)	158, 1086, 1213, 1287, 1419
Bst6I	CTCTTC	2 cut(s)	526, 1317
BstAFI	CTTAAG	1 cut(s)	709
BstC8I	GCNNGC	2 cut(s)	463, 565
BstDEI	CTNAG	7 cut(s)	46, 222, 879, 889, 996, 1182, 1359
BstEII	GGTNACC	1 cut(s)	1248
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	518, 664
BstKTI	GATC	4 cut(s)	25, 62, 193, 776
BstMAI	GTCTC	3 cut(s)	334, 882, 1374
BstMBI	GATC	4 cut(s)	22, 59, 190, 773
BstMWI	GCNNNNNNNGC	4 cut(s)	313, 370, 1031, 1162
BstNI	CCWGG	2 cut(s)	523, 975
BstNSI	RCATGY	2 cut(s)	260, 465
BstPI	GGTNACC	1 cut(s)	1248
BstSCI	CCNGG	4 cut(s)	66, 67, 521, 973
BstV1I	GCAGC	6 cut(s)	580, 616, 990, 1012, 1043, 1046
BstV2I	GAAGAC	2 cut(s)	842, 1277
BstX2I	RGATCY	2 cut(s)	59, 773
BstYI	RGATCY	2 cut(s)	59, 773
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	170, 537, 567
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	518, 664
Cac8I	GCNNGC	2 cut(s)	463, 565
CaiI	CAGNNNCTG	2 cut(s)	1003, 1189
Cfr10I	RCCGGY	2 cut(s)	467, 696
Cfr13I	GGNCC	5 cut(s)	97, 169, 536, 971, 992
Cfr9I	CCCGGG	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	421, 626, 806, 1146
CspAI	ACCGGT	1 cut(s)	696
CviAII	CATG	7 cut(s)	128, 257, 462, 481, 543, 1243, 1400
CviQI	GTAC	4 cut(s)	421, 626, 806, 1146
DdeI	CTNAG	7 cut(s)	46, 222, 879, 889, 996, 1182, 1359
DpnI	GATC	4 cut(s)	24, 61, 192, 775
DpnII	GATC	4 cut(s)	22, 59, 190, 773
DraI	TTTAAA	1 cut(s)	904
Eam1104I	CTCTTC	2 cut(s)	526, 1317
EarI	CTCTTC	2 cut(s)	526, 1317
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	97, 971, 992
Eco57I	CTGAAG	2 cut(s)	854, 1211
Eco88I	CYCGRG	2 cut(s)	67, 100
Eco91I	GGTNACC	1 cut(s)	1248
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoO109I	RGGNCCY	3 cut(s)	97, 536, 992
EcoO65I	GGTNACC	1 cut(s)	1248
EcoRII	CCWGG	2 cut(s)	521, 973
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	7 cut(s)	131, 260, 465, 484, 546, 1246, 1403
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	1005
FatI	CATG	7 cut(s)	127, 256, 461, 480, 542, 1242, 1399
FauI	CCCGC	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	1013
Fnu4HI	GCNGC	6 cut(s)	594, 605, 1001, 1004, 1032, 1035
FokI	GGATG	2 cut(s)	505, 651
Fsp4HI	GCNGC	6 cut(s)	594, 605, 1001, 1004, 1032, 1035
FspBI	CTAG	4 cut(s)	389, 432, 783, 1320
GluI	GCNGC	6 cut(s)	594, 605, 1001, 1004, 1032, 1035
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	3 cut(s)	170, 537, 567
HapII	CCGG	4 cut(s)	68, 468, 568, 697
Hin1II	CATG	7 cut(s)	131, 260, 465, 484, 546, 1246, 1403
HindIII	AAGCTT	2 cut(s)	747, 1176
HinfI	GANTC	5 cut(s)	77, 86, 271, 688, 1019
HpaII	CCGG	4 cut(s)	68, 468, 568, 697
HphI	GGTGA	5 cut(s)	47, 422, 467, 655, 1037
Hpy166II	GTNNAC	6 cut(s)	293, 935, 1014, 1148, 1303, 1325
Hpy188I	TCNGA	8 cut(s)	49, 64, 82, 234, 687, 790, 834, 1317
Hpy188III	TCNNGA	9 cut(s)	26, 116, 188, 194, 275, 389, 631, 852, 1076
Hpy8I	GTNNAC	6 cut(s)	293, 935, 1014, 1148, 1303, 1325
Hpy99I	CGWCG	1 cut(s)	1332
HpyAV	CCTTC	3 cut(s)	725, 808, 1186
HpyCH4III	ACNGT	5 cut(s)	158, 1086, 1213, 1287, 1419
HpyCH4V	TGCA	8 cut(s)	428, 450, 461, 465, 1082, 1156, 1225, 1389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	313, 370, 1031, 1162
HpyF3I	CTNAG	7 cut(s)	46, 222, 879, 889, 996, 1182, 1359
Hsp92II	CATG	7 cut(s)	131, 260, 465, 484, 546, 1246, 1403
Kzo9I	GATC	4 cut(s)	22, 59, 190, 773
LmnI	GCTCC	4 cut(s)	304, 382, 633, 859
Lsp1109I	GCAGC	6 cut(s)	580, 616, 990, 1012, 1043, 1046
LweI	GCATC	6 cut(s)	229, 394, 437, 448, 527, 1069
MaeI	CTAG	4 cut(s)	389, 432, 783, 1320
MaeIII	GTNAC	4 cut(s)	104, 1117, 1248, 1413
MalI	GATC	4 cut(s)	24, 61, 192, 775
MboI	GATC	4 cut(s)	22, 59, 190, 773
MboII	GAAGA	9 cut(s)	50, 131, 427, 543, 737, 847, 1282, 1304, 1377
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	2 cut(s)	59, 773
MluCI	AATT	6 cut(s)	445, 618, 1201, 1220, 1391, 1403
MmeI	TCCRAC	3 cut(s)	87, 665, 1340
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	4 cut(s)	228, 378, 710, 903
MslI	CAYNNNNRTG	1 cut(s)	1214
MspA1I	CMGCKG	2 cut(s)	373, 1003
MspCI	CTTAAG	1 cut(s)	709
MspI	CCGG	4 cut(s)	68, 468, 568, 697
MspR9I	CCNGG	4 cut(s)	68, 69, 523, 975
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	523, 975
MwoI	GCNNNNNNNGC	4 cut(s)	313, 370, 1031, 1162
NciI	CCSGG	2 cut(s)	68, 69
NdeII	GATC	4 cut(s)	22, 59, 190, 773
NlaIII	CATG	7 cut(s)	131, 260, 465, 484, 546, 1246, 1403
NlaIV	GGNNCC	3 cut(s)	61, 99, 993
NmuCI	GTSAC	1 cut(s)	1117
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	2 cut(s)	260, 465
PaeI	GCATGC	1 cut(s)	465
PciI	ACATGT	1 cut(s)	256
PfeI	GAWTC	5 cut(s)	77, 86, 271, 688, 1019
PfoI	TCCNGGA	2 cut(s)	521, 973
PinAI	ACCGGT	1 cut(s)	696
PkrI	GCNGC	6 cut(s)	595, 606, 1002, 1005, 1033, 1036
PpuMI	RGGWCCY	2 cut(s)	97, 992
PscI	ACATGT	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	1233
Psp5II	RGGWCCY	2 cut(s)	97, 992
Psp6I	CCWGG	2 cut(s)	521, 973
PspEI	GGTNACC	1 cut(s)	1248
PspGI	CCWGG	2 cut(s)	521, 973
PspN4I	GGNNCC	3 cut(s)	61, 99, 993
PspPI	GGNCC	5 cut(s)	97, 169, 536, 971, 992
PspPPI	RGGWCCY	2 cut(s)	97, 992
PstNI	CAGNNNCTG	2 cut(s)	1003, 1189
PsuI	RGATCY	2 cut(s)	59, 773
PvuII	CAGCTG	1 cut(s)	1003
RsaI	GTAC	4 cut(s)	422, 627, 807, 1147
RsaNI	GTAC	4 cut(s)	421, 626, 806, 1146
RseI	CAYNNNNRTG	1 cut(s)	1214
SaqAI	TTAA	4 cut(s)	228, 378, 710, 903
SatI	GCNGC	6 cut(s)	594, 605, 1001, 1004, 1032, 1035
Sau3AI	GATC	4 cut(s)	22, 59, 190, 773
Sau96I	GGNCC	5 cut(s)	97, 169, 536, 971, 992
ScaI	AGTACT	1 cut(s)	627
ScrFI	CCNGG	4 cut(s)	68, 69, 523, 975
SfaNI	GCATC	6 cut(s)	229, 394, 437, 448, 527, 1069
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	97, 971, 992
SmaI	CCCGGG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	1214
SmlI	CTYRAG	4 cut(s)	322, 709, 766, 1074
SmoI	CTYRAG	4 cut(s)	322, 709, 766, 1074
SpeI	ACTAGT	1 cut(s)	1319
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	6 cut(s)	445, 618, 1201, 1220, 1391, 1403
SsiI	CCGC	4 cut(s)	54, 373, 948, 1023
SspMI	CTAG	4 cut(s)	389, 432, 783, 1320
StyD4I	CCNGG	4 cut(s)	66, 67, 521, 973
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	5 cut(s)	158, 1086, 1213, 1287, 1419
TaqI	TCGA	1 cut(s)	1104
TasI	AATT	6 cut(s)	445, 618, 1201, 1220, 1391, 1403
TatI	WGTACW	2 cut(s)	625, 1145
TfiI	GAWTC	5 cut(s)	77, 86, 271, 688, 1019
Tru1I	TTAA	4 cut(s)	228, 378, 710, 903
Tru9I	TTAA	4 cut(s)	228, 378, 710, 903
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	6 cut(s)	593, 604, 1000, 1003, 1031, 1034
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	9 cut(s)	267, 516, 653, 744, 947, 1151, 1231, 1232, 1416
TspMI	CCCGGG	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	97, 971, 992
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	1 cut(s)	1391
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	260, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	1013
XspI	CTAG	4 cut(s)	389, 432, 783, 1320
ZrmI	AGTACT	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.