Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Forward (+)

7740732 .. 7741796

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTGCCCCTAAGCAATCCAAAAATCGTCGATACGAAGAAAAAGATGAAGACTTGTGGGAAATCGGTGAGTCCGAGTCCGACCCAGAATACGATTCGGATGAGTCAATGAAGGACCCGACTTACCGCATTCTCGAAGAAACCCACGCCAAGTTCTCAAATTTCTCGATCAAGGTTAAATCAAAGGCTCGAATTGTTCAGGATAATGATGTCGGTAGTGAAGCAGAAGTTGATGGACAGGAGGTGGTTGTGCCTGAGCTGGACGAGAAGGATAGACAAAGCTTTGAAAATGTTCAGAAGATTATTGAAGCTAGACAGATTGAGAAACTAAAAGTGGAGCAATGTAAGCTGTACCTTAGGAAGAACGGGTTGAGACTCACCGGAAATAAAGACACGCTTATTTGGCGCATTAAGGAGCATTTAGAGATTTTGAATGGTGGAGGGCAAATTGTTATTACCAGCATTATTATCTTCGGTCCAAAGGCCATGTGTCAAAACAAGGATCGTTGCCCGCTGCCCGAAAATCCTAAGGTCATCTTTTCAATGATATCATTCATTGTGTATGTTGAATTTGCTTTCACTGAGAGTGGTGTGCTGAACATTTTTCGTTCCTCTATGTTTAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

210

Amino Acids

24.11

Weight (kDa)

5.12

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 512
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	160, 569
AfaI	GTAC	1 cut(s)	353
AgsI	TTSAA	5 cut(s)	287, 308, 433, 543, 569
AluBI	AGCT	4 cut(s)	259, 282, 311, 349
AluI	AGCT	4 cut(s)	259, 282, 311, 349
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	510
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	5, 514
ApoI	RAATTY	2 cut(s)	160, 569
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	115, 476
AsuHPI	GGTGA	2 cut(s)	80, 370
AvaII	GGWCC	2 cut(s)	115, 476
AxyI	CCTNAGG	2 cut(s)	356, 528
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	6, 515
BlsI	GCNGC	2 cut(s)	7, 516
Bme18I	GGWCC	2 cut(s)	115, 476
BmgT120I	GGNCC	2 cut(s)	115, 476
BmiI	GGNNCC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	2 cut(s)	12, 255
BsaWI	WCCGGW	1 cut(s)	380
Bse21I	CCTNAGG	2 cut(s)	356, 528
Bse3DI	GCAATG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	246, 573
BseXI	GCAGC	1 cut(s)	501
BshFI	GGCC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	168, 502
BspACI	CCGC	2 cut(s)	127, 512
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	247, 574
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	347
BssMI	GATC	2 cut(s)	168, 502
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	5 cut(s)	12, 255, 356, 528, 582
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	2 cut(s)	171, 505
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	168, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 403
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	57
Bsu36I	CCTNAGG	2 cut(s)	356, 528
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	512
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	115, 476
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	487
CviJI	RGCY	7 cut(s)	5, 188, 259, 282, 311, 349, 485
CviKI_1	RGCY	7 cut(s)	5, 188, 259, 282, 311, 349, 485
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	5 cut(s)	12, 255, 356, 528, 582
DpnI	GATC	2 cut(s)	170, 504
DpnII	GATC	2 cut(s)	168, 502
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	115, 476
Eco81I	CCTNAGG	2 cut(s)	356, 528
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	549
FaeI	CATG	1 cut(s)	490
FaiI	YATR	3 cut(s)	488, 564, 617
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 521, 553
FatI	CATG	1 cut(s)	486
FauI	CCCGC	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	6, 515
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	6, 515
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	6, 515
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	71, 77, 95, 104, 375
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	80, 370
Hpy188I	TCNGA	4 cut(s)	76, 82, 100, 297
Hpy188III	TCNNGA	3 cut(s)	134, 166, 200
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	106, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 403
HpyF3I	CTNAG	5 cut(s)	12, 255, 356, 528, 582
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	168, 502
LmnI	GCTCC	2 cut(s)	337, 415
LpnPI	CCDG	7 cut(s)	99, 185, 224, 245, 267, 394, 472
Lsp1109I	GCAGC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	312
MalI	GATC	2 cut(s)	170, 504
MboI	GATC	2 cut(s)	168, 502
MboII	GAAGA	6 cut(s)	50, 62, 149, 310, 373, 463
MluCI	AATT	4 cut(s)	160, 192, 447, 569
MlyI	GAGTC	4 cut(s)	80, 86, 113, 369
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	235, 434, 622
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	177, 411, 621
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	346, 403
NdeII	GATC	2 cut(s)	168, 502
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	7, 516
PleI	GAGTC	4 cut(s)	79, 85, 112, 369
PpsI	GAGTC	4 cut(s)	79, 85, 112, 369
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	115, 476
PspPPI	RGGWCCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	177, 411, 621
SatI	GCNGC	2 cut(s)	6, 515
Sau3AI	GATC	2 cut(s)	168, 502
Sau96I	GGNCC	2 cut(s)	115, 476
SchI	GAGTC	4 cut(s)	80, 86, 113, 369
SetI	ASST	8 cut(s)	177, 246, 261, 284, 313, 351, 357, 534
SinI	GGWCC	2 cut(s)	115, 476
Sse9I	AATT	4 cut(s)	160, 192, 447, 569
SsiI	CCGC	2 cut(s)	127, 512
SspMI	CTAG	1 cut(s)	312
TaqI	TCGA	4 cut(s)	31, 135, 167, 190
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	160, 192, 447, 569
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	3 cut(s)	177, 411, 621
Tru9I	TTAA	3 cut(s)	177, 411, 621
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	2 cut(s)	5, 514
TspDTI	ATGAA	3 cut(s)	63, 125, 544
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	115, 476
XapI	RAATTY	2 cut(s)	160, 569
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.