Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Forward (+)

558972 .. 560740

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATTTTGGAAAGGATGCAAATAATAAGAGTGAGGTTGTATCCTTAGGAACTGGAGAAGAATTATGTTGTATTGGTGATGCTCATGGAGTAGCTGTTGTTGACAGATATTATTCAAGGACATGCGTGACCAACATCCCTTATCAAATCTCCTCACCTCTCACCTTCAAGTTATTGCATCACAAACCTGCCTTCCAAAAGGAATTTGCAATGAGGTTGACAAGCTCTGCTGTCGTCTCAGCAAGTGTTCGCATCTGCCGCCAACCAAGATCGAAAATTTCCGGTCGTCCACCGATTCAATTCTCGGTTTGCTCCTCCAAACCAGCACACCTGAGAATCGGCGGGGCAGAAGGCACAGCAGAGTTCGACGAGGGCGACAGGGTAGGCTCTACAGGCGGAATCGAATTGATCCATGACGGAGTCGAGATCTGGGGAGGAAGGGCAGTGGCAGATTCCGATGATGGCGAGGGTTTTGCGGTTGGACTGGAAGTCCTCCCAGGGGCTGGGAGGGGCGCCGCCGAGGACGAACTAGAAGTTGAGGCTGCCGGAGTCCCAGGGCTGGTGAGCGAAGGGCGACTTCTGGTGCTCGGTGTAGATAGAGTTGACGGCGGAGAGTGGATCGACCGGGGGGACGTGGCCGATGGGGAGGACCGCCACGCAGATCATGGAGCTGGTTTCGATGCTCACGTCCGGCTCCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

234

Amino Acids

24.76

Weight (kDa)

5.08

Isoelectric Point (pI)

22.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	503
AciI	CCGC	7 cut(s)	259, 342, 396, 476, 516, 609, 652
AclWI	GGATC	2 cut(s)	403, 626
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	3 cut(s)	4, 203, 276
AcyI	GRCGYC	1 cut(s)	513
AfiI	CCNNNNNNNGG	3 cut(s)	499, 503, 559
AgsI	TTSAA	3 cut(s)	117, 169, 299
AhdI	GACNNNNNGTC	1 cut(s)	488
AjiI	CACGTC	2 cut(s)	634, 688
AjnI	CCWGG	2 cut(s)	496, 553
AluBI	AGCT	3 cut(s)	95, 225, 671
AluI	AGCT	3 cut(s)	95, 225, 671
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	403, 626
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	3 cut(s)	4, 203, 276
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	4 cut(s)	89, 147, 154, 574
AvaII	GGWCC	1 cut(s)	649
AxyI	CCTNAGG	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	455, 635
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	498, 555
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	3 cut(s)	259, 516, 543
BlsI	GCNGC	3 cut(s)	260, 517, 544
Bme1390I	CCNGG	3 cut(s)	498, 555, 626
Bme18I	GGWCC	1 cut(s)	649
BmeRI	GACNNNNNGTC	1 cut(s)	488
BmgBI	CACGTC	2 cut(s)	634, 688
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	2 cut(s)	514, 695
BmrFI	CCNGG	3 cut(s)	498, 555, 626
BmsI	GCATC	5 cut(s)	7, 70, 187, 261, 670
BpmI	CTGGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	6 cut(s)	496, 497, 519, 553, 554, 625
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	499, 503, 559
Bse1I	ACTGG	2 cut(s)	58, 489
Bse21I	CCTNAGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	498, 555
BseDI	CCNNGG	6 cut(s)	496, 497, 519, 553, 554, 625
BseGI	GGATG	2 cut(s)	22, 135
BseLI	CCNNNNNNNGG	3 cut(s)	499, 503, 559
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	252, 323
BseNI	ACTGG	2 cut(s)	58, 489
BseRI	GAGGAG	2 cut(s)	142, 304
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	2 cut(s)	286, 625
BshFI	GGCC	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	512
BsiEI	CGRYCG	2 cut(s)	286, 625
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	282, 546, 625, 691
BslFI	GGGAC	2 cut(s)	536, 644
BslI	CCNNNNNNNGG	3 cut(s)	499, 503, 559
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	536, 644
BsnI	GGCC	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	269, 408, 426, 618, 661
BspACI	CCGC	7 cut(s)	259, 342, 396, 476, 516, 609, 652
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	2 cut(s)	251, 324
BspLI	GGNNCC	2 cut(s)	514, 695
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	403, 626
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	58, 489
BssECI	CCNNGG	6 cut(s)	496, 497, 519, 553, 554, 625
BssMI	GATC	5 cut(s)	269, 408, 426, 618, 661
BssNI	GRCGYC	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	498, 555
BstACI	GRCGYC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	46, 238, 332
BstF5I	GGATG	2 cut(s)	22, 135
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	5 cut(s)	272, 411, 429, 621, 664
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	5 cut(s)	269, 408, 426, 618, 661
BstMCI	CGRYCG	2 cut(s)	286, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 393
BstNI	CCWGG	2 cut(s)	498, 555
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	496, 553, 624
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	638
BtrI	CACGTC	2 cut(s)	634, 688
BtsCI	GGATG	2 cut(s)	22, 135
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	649
CviAII	CATG	4 cut(s)	86, 123, 413, 665
CviJI	RGCY	9 cut(s)	95, 225, 387, 503, 542, 559, 638, 671, 694
CviKI_1	RGCY	9 cut(s)	95, 225, 387, 503, 542, 559, 638, 671, 694
DdeI	CTNAG	3 cut(s)	46, 238, 332
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	5 cut(s)	271, 410, 428, 620, 663
DpnII	GATC	5 cut(s)	269, 408, 426, 618, 661
DriI	GACNNNNNGTC	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	636
Eam1105I	GACNNNNNGTC	1 cut(s)	488
EciI	GGCGGA	2 cut(s)	411, 624
Eco47I	GGWCC	1 cut(s)	649
Eco81I	CCTNAGG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	496, 553
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	4 cut(s)	89, 126, 416, 668
FaiI	YATR	5 cut(s)	67, 87, 124, 414, 666
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	2 cut(s)	536, 644
FatI	CATG	4 cut(s)	85, 122, 412, 664
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	259, 516, 543
FokI	GGATG	2 cut(s)	29, 122
Fsp4HI	GCNGC	3 cut(s)	259, 516, 543
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	3 cut(s)	259, 516, 543
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	4 cut(s)	282, 546, 625, 691
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	4 cut(s)	89, 126, 416, 668
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	3 cut(s)	103, 219, 604
HindII	GTYRAC	3 cut(s)	103, 219, 604
HinfI	GANTC	6 cut(s)	295, 336, 399, 420, 452, 549
HpaII	CCGG	4 cut(s)	282, 546, 625, 691
HphI	GGTGA	4 cut(s)	89, 147, 154, 574
Hpy166II	GTNNAC	4 cut(s)	103, 219, 290, 604
Hpy188I	TCNGA	2 cut(s)	457, 704
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	4 cut(s)	103, 219, 290, 604
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	5 cut(s)	175, 202, 344, 432, 563
HpyCH4IV	ACGT	2 cut(s)	633, 687
HpyCH4V	TGCA	3 cut(s)	20, 178, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 393
HpyF3I	CTNAG	3 cut(s)	46, 238, 332
HpySE526I	ACGT	2 cut(s)	633, 687
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	4 cut(s)	89, 126, 416, 668
HspAI	GCGC	1 cut(s)	513
KasI	GGCGCC	1 cut(s)	512
Kzo9I	GATC	5 cut(s)	269, 408, 426, 618, 661
LmnI	GCTCC	3 cut(s)	317, 668, 699
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	5 cut(s)	7, 70, 187, 261, 670
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	633, 687
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	271, 410, 428, 620, 663
MboI	GATC	5 cut(s)	269, 408, 426, 618, 661
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	6 cut(s)	4, 62, 203, 276, 299, 404
Mly113I	GGCGCC	1 cut(s)	513
MlyI	GAGTC	2 cut(s)	429, 558
MmeI	TCCRAC	1 cut(s)	460
MspI	CCGG	4 cut(s)	282, 546, 625, 691
MspR9I	CCNGG	3 cut(s)	498, 555, 626
MvaI	CCWGG	2 cut(s)	498, 555
MwoI	GCNNNNNNNGC	2 cut(s)	258, 393
NarI	GGCGCC	1 cut(s)	513
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	5 cut(s)	269, 408, 426, 618, 661
NlaIII	CATG	4 cut(s)	89, 126, 416, 668
NlaIV	GGNNCC	2 cut(s)	514, 695
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	126
PasI	CCCWGGG	2 cut(s)	497, 554
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 684
PfeI	GAWTC	4 cut(s)	295, 336, 399, 452
PflFI	GACNNNGTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	260, 517, 544
PleI	GAGTC	2 cut(s)	428, 557
PluTI	GGCGCC	1 cut(s)	516
PpsI	GAGTC	2 cut(s)	428, 557
Psp6I	CCWGG	2 cut(s)	496, 553
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	496, 553
PspN4I	GGNNCC	2 cut(s)	514, 695
PspPI	GGNCC	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	419
SatI	GCNGC	3 cut(s)	259, 516, 543
Sau3AI	GATC	5 cut(s)	269, 408, 426, 618, 661
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	429, 558
ScrFI	CCNGG	3 cut(s)	498, 555, 626
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	5 cut(s)	7, 70, 187, 261, 670
SfcI	CTRYAG	1 cut(s)	390
SfoI	GGCGCC	1 cut(s)	514
SinI	GGWCC	1 cut(s)	649
Sse9I	AATT	6 cut(s)	4, 62, 203, 276, 299, 404
SsiI	CCGC	7 cut(s)	259, 342, 396, 476, 516, 609, 652
SspDI	GGCGCC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	496, 553, 624
TaiI	ACGT	2 cut(s)	636, 690
TaqI	TCGA	6 cut(s)	272, 366, 402, 423, 621, 678
TasI	AATT	6 cut(s)	4, 62, 203, 276, 299, 404
TauI	GCSGC	2 cut(s)	261, 518
TfiI	GAWTC	4 cut(s)	295, 336, 399, 452
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	450
Tth111I	GACNNNGTC	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	3 cut(s)	4, 203, 276
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.