Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

68526242 .. 68528974

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG473300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCTTCTGTCACCCAGCAATCCAAACATCATCAATATCTTGAAAAGGGTGAAGAAGATTTCTCAGAAAGCGGAGGATCCGACCCGGGATACGATTCCGATGATTCGGTTGAGGACCCGAGTTACAGCACTCTTGAAGAAACCCATGCCCACTTCTCAAACCTCTCCATCAACAGTAAATCCAAGGCCCGTATGGTGGAGGTTCTTGATCTTGAATCAGACCTTGATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGAATGATGCTAAAAGCTATGAGCATGTCCAAAAGATGATTCAAGACGAACAGATTGGTAAACTGAAAGTGGAGCAATGTAAGCTCTACTTGAGGAAAAATGGGTTGAGACTGACTGGCAATAAGGACACGCTCATTCAGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCTGCATCTAGCTTTGTTTTGAATTGCAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCGCAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACCTTAAGACAGAGGTGGGAAGATGAAGGGGAGAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAGAAACTCTGAAGACAAATAGGATTTCAAGAAAGGAGCAAAAAAACAATCAGTCTCAGTTGAACTCAGCCTCTACTTTTAAATCATCTGTTCAACCTCATCAATCTTGTCCACTTGTTTATCCCGCAATGCTTCATCAATCATTTGGTCCAGGAAATACAAAAATGGGACCTCAGCAGCTGCGATTGTCTACTGATTCCACTAAAGCAGCAGCTCAAACTCACCATTCACAGAAACCAGCAACTCAACCTCAAGATGCACAGTCAGGCTTATTGATTGTCGATTGTGGAAAAGTGACAACTCAACCTCAAATGAAAAATAATACAGTTATGCAAGATAGGCACTTCAATCAAGCTTCTCAGCACCTGAAGGTTAGCAATTATGACACAGTTATGAAATTGCATAGTTATAGTGAGTTTATGGGGTTACAACCACCACCAAAGAAGACTTATCAAAAACAGTCATTGACAAGCGTGAACCACTCTCTTCCGACTAGTCCACGACGACAAAAGCAGATGTGCCGTCATTATGCTCAGGGCAGATGTTATTATGGAGACAACTGCAAATTTTCCCATGAATTGAGAGAGTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

481

Amino Acids

54.53

Weight (kDa)

9.08

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	105 - 140	1.5e-09	SAP domain
DUF7699	PF24766	164 - 250	8.3e-43	Domain of unknown function (DUF7699)
zf-CCCH_4	PF18044	456 - 475	6.6e-10	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1040
AciI	CCGC	3 cut(s)	72, 400, 975
AclWI	GGATC	3 cut(s)	72, 85, 808
AcsI	RAATTY	1 cut(s)	1415
AcuI	CTGAAG	2 cut(s)	881, 1238
AfaI	GTAC	3 cut(s)	449, 654, 834
AfiI	CCNNNNNNNGG	4 cut(s)	196, 229, 572, 706
AflII	CTTAAG	1 cut(s)	736
AgeI	ACCGGT	1 cut(s)	723
AhlI	ACTAGT	1 cut(s)	1343
AjnI	CCWGG	2 cut(s)	548, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	9 cut(s)	253, 276, 343, 462, 612, 776, 1030, 1064, 1205
AluI	AGCT	9 cut(s)	253, 276, 343, 462, 612, 776, 1030, 1064, 1205
Alw26I	GTCTC	3 cut(s)	361, 909, 1398
AlwI	GGATC	3 cut(s)	72, 85, 808
AlwNI	CAGNNNCTG	2 cut(s)	1030, 1216
Ama87I	CYCGRG	2 cut(s)	85, 118
AoxI	GGCC	3 cut(s)	186, 562, 592
ApeKI	GCWGC	6 cut(s)	620, 631, 1027, 1030, 1058, 1061
ApoI	RAATTY	1 cut(s)	1415
AsiGI	ACCGGT	1 cut(s)	723
AspS9I	GGNCC	5 cut(s)	115, 187, 563, 998, 1019
AsuC2I	CCSGG	2 cut(s)	86, 87
AsuHPI	GGTGA	6 cut(s)	4, 62, 449, 494, 682, 1064
AvaI	CYCGRG	2 cut(s)	85, 118
AvaII	GGWCC	3 cut(s)	115, 998, 1019
BamHI	GGATCC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	816, 848
BbsI	GAAGAC	2 cut(s)	869, 1301
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	6 cut(s)	607, 643, 1017, 1039, 1070, 1073
BccI	CCATC	3 cut(s)	176, 221, 775
BceAI	ACGGC	1 cut(s)	1356
BciT130I	CCWGG	2 cut(s)	550, 1002
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	3 cut(s)	361, 909, 1398
BcuI	ACTAGT	1 cut(s)	1343
BfaI	CTAG	4 cut(s)	416, 459, 810, 1344
BfrI	CTTAAG	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	6 cut(s)	621, 632, 1028, 1031, 1059, 1062
BlsI	GCNGC	6 cut(s)	622, 633, 1029, 1032, 1060, 1063
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	4 cut(s)	86, 87, 550, 1002
Bme18I	GGWCC	3 cut(s)	115, 998, 1019
BmeT110I	CYCGRG	2 cut(s)	85, 118
BmgT120I	GGNCC	5 cut(s)	115, 187, 563, 998, 1019
BmiI	GGNNCC	3 cut(s)	79, 117, 1020
BmrFI	CCNGG	4 cut(s)	86, 87, 550, 1002
BmsI	GCATC	6 cut(s)	256, 421, 464, 475, 554, 1096
BpiI	GAAGAC	2 cut(s)	869, 1301
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	3 cut(s)	249, 1023, 1383
BpuEI	CTTGAG	3 cut(s)	370, 778, 1086
BpuMI	CCSGG	2 cut(s)	86, 87
BsaJI	CCNNGG	2 cut(s)	85, 183
BsaWI	WCCGGW	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 229, 572, 706
Bse118I	RCCGGY	2 cut(s)	494, 723
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	341, 984
BseBI	CCWGG	2 cut(s)	550, 1002
BseDI	CCNNGG	2 cut(s)	85, 183
BseGI	GGATG	2 cut(s)	545, 691
BseLI	CCNNNNNNNGG	4 cut(s)	196, 229, 572, 706
BseMI	GCAATG	2 cut(s)	341, 984
BseMII	CTCAG	7 cut(s)	78, 240, 920, 930, 1037, 1223, 1397
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	6 cut(s)	607, 643, 1017, 1039, 1070, 1073
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	3 cut(s)	188, 564, 594
BshTI	ACCGGT	1 cut(s)	723
BsiHKCI	CYCGRG	2 cut(s)	85, 118
BsiSI	CCGG	4 cut(s)	86, 495, 595, 724
BslFI	GGGAC	1 cut(s)	1032
BslI	CCNNNNNNNGG	4 cut(s)	196, 229, 572, 706
BsmAI	GTCTC	3 cut(s)	361, 909, 1398
BsmFI	GGGAC	1 cut(s)	1032
BsnI	GGCC	3 cut(s)	188, 564, 594
BsoBI	CYCGRG	2 cut(s)	85, 118
Bsp143I	GATC	3 cut(s)	77, 208, 800
BspACI	CCGC	3 cut(s)	72, 400, 975
BspANI	GGCC	3 cut(s)	188, 564, 594
BspCNI	CTCAG	7 cut(s)	77, 241, 919, 929, 1036, 1222, 1396
BspLI	GGNNCC	3 cut(s)	79, 117, 1020
BspPI	GGATC	3 cut(s)	72, 85, 808
BspTI	CTTAAG	1 cut(s)	736
BsrDI	GCAATG	2 cut(s)	341, 984
BsrFI	RCCGGY	2 cut(s)	494, 723
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	2 cut(s)	494, 723
BssECI	CCNNGG	2 cut(s)	85, 183
BssMI	GATC	3 cut(s)	77, 208, 800
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	550, 1002
Bst4CI	ACNGT	6 cut(s)	176, 1113, 1177, 1240, 1311, 1443
Bst6I	CTCTTC	2 cut(s)	553, 1341
BstAFI	CTTAAG	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	490, 592
BstDEI	CTNAG	7 cut(s)	64, 249, 906, 916, 1023, 1209, 1383
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	2 cut(s)	545, 691
BstKTI	GATC	3 cut(s)	80, 211, 803
BstMAI	GTCTC	3 cut(s)	361, 909, 1398
BstMBI	GATC	3 cut(s)	77, 208, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 397, 1189
BstNI	CCWGG	2 cut(s)	550, 1002
BstNSI	RCATGY	2 cut(s)	287, 492
BstSCI	CCNGG	4 cut(s)	84, 85, 548, 1000
BstV1I	GCAGC	6 cut(s)	607, 643, 1017, 1039, 1070, 1073
BstV2I	GAAGAC	2 cut(s)	869, 1301
BstX2I	RGATCY	2 cut(s)	77, 800
BstYI	RGATCY	2 cut(s)	77, 800
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	188, 564, 594
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	545, 691
Cac8I	GCNNGC	2 cut(s)	490, 592
CaiI	CAGNNNCTG	2 cut(s)	1030, 1216
Cfr10I	RCCGGY	2 cut(s)	494, 723
Cfr13I	GGNCC	5 cut(s)	115, 187, 563, 998, 1019
Cfr9I	CCCGGG	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	448, 653, 833
CspAI	ACCGGT	1 cut(s)	723
CviAII	CATG	6 cut(s)	146, 284, 489, 508, 570, 1424
CviQI	GTAC	3 cut(s)	448, 653, 833
DdeI	CTNAG	7 cut(s)	64, 249, 906, 916, 1023, 1209, 1383
DpnI	GATC	3 cut(s)	79, 210, 802
DpnII	GATC	3 cut(s)	77, 208, 800
DraI	TTTAAA	1 cut(s)	931
Eam1104I	CTCTTC	2 cut(s)	553, 1341
EarI	CTCTTC	2 cut(s)	553, 1341
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	115, 998, 1019
Eco57I	CTGAAG	2 cut(s)	881, 1238
Eco88I	CYCGRG	2 cut(s)	85, 118
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoO109I	RGGNCCY	3 cut(s)	115, 563, 1019
EcoRII	CCWGG	2 cut(s)	548, 1000
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	6 cut(s)	149, 287, 492, 511, 573, 1427
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	1032
FatI	CATG	6 cut(s)	145, 283, 488, 507, 569, 1423
FauI	CCCGC	1 cut(s)	982
FblI	GTMKAC	1 cut(s)	1040
Fnu4HI	GCNGC	6 cut(s)	621, 632, 1028, 1031, 1059, 1062
FokI	GGATG	2 cut(s)	532, 678
Fsp4HI	GCNGC	6 cut(s)	621, 632, 1028, 1031, 1059, 1062
FspBI	CTAG	4 cut(s)	416, 459, 810, 1344
GluI	GCNGC	6 cut(s)	621, 632, 1028, 1031, 1059, 1062
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	679
HaeIII	GGCC	3 cut(s)	188, 564, 594
HapII	CCGG	4 cut(s)	86, 495, 595, 724
Hin1II	CATG	6 cut(s)	149, 287, 492, 511, 573, 1427
HindIII	AAGCTT	2 cut(s)	774, 1203
HinfI	GANTC	6 cut(s)	95, 104, 215, 298, 715, 1046
HpaII	CCGG	4 cut(s)	86, 495, 595, 724
HphI	GGTGA	6 cut(s)	4, 62, 449, 494, 682, 1064
Hpy166II	GTNNAC	5 cut(s)	320, 962, 1041, 1327, 1349
Hpy188I	TCNGA	9 cut(s)	67, 82, 100, 220, 261, 714, 817, 861, 1341
Hpy188III	TCNNGA	9 cut(s)	41, 134, 206, 212, 302, 416, 658, 879, 1103
Hpy8I	GTNNAC	5 cut(s)	320, 962, 1041, 1327, 1349
Hpy99I	CGWCG	1 cut(s)	1356
HpyAV	CCTTC	3 cut(s)	752, 835, 1213
HpyCH4III	ACNGT	6 cut(s)	176, 1113, 1177, 1240, 1311, 1443
HpyCH4V	TGCA	8 cut(s)	455, 477, 488, 492, 1109, 1183, 1252, 1413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 397, 1189
HpyF3I	CTNAG	7 cut(s)	64, 249, 906, 916, 1023, 1209, 1383
Hsp92II	CATG	6 cut(s)	149, 287, 492, 511, 573, 1427
Kzo9I	GATC	3 cut(s)	77, 208, 800
LmnI	GCTCC	4 cut(s)	331, 409, 660, 886
Lsp1109I	GCAGC	6 cut(s)	607, 643, 1017, 1039, 1070, 1073
LweI	GCATC	6 cut(s)	256, 421, 464, 475, 554, 1096
MaeI	CTAG	4 cut(s)	416, 459, 810, 1344
MaeIII	GTNAC	5 cut(s)	10, 122, 1144, 1275, 1437
MalI	GATC	3 cut(s)	79, 210, 802
MboI	GATC	3 cut(s)	77, 208, 800
MboII	GAAGA	9 cut(s)	65, 68, 149, 454, 570, 764, 874, 1306, 1328
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	77, 800
MluCI	AATT	6 cut(s)	472, 645, 1228, 1247, 1415, 1427
MmeI	TCCRAC	3 cut(s)	105, 692, 1364
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	4 cut(s)	255, 405, 737, 930
MslI	CAYNNNNRTG	1 cut(s)	1241
MspA1I	CMGCKG	2 cut(s)	400, 1030
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	4 cut(s)	86, 495, 595, 724
MspR9I	CCNGG	4 cut(s)	86, 87, 550, 1002
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	550, 1002
MwoI	GCNNNNNNNGC	3 cut(s)	340, 397, 1189
NciI	CCSGG	2 cut(s)	86, 87
NdeII	GATC	3 cut(s)	77, 208, 800
NlaIII	CATG	6 cut(s)	149, 287, 492, 511, 573, 1427
NlaIV	GGNNCC	3 cut(s)	79, 117, 1020
NmuCI	GTSAC	2 cut(s)	10, 1144
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	2 cut(s)	287, 492
PaeI	GCATGC	1 cut(s)	492
PfeI	GAWTC	6 cut(s)	95, 104, 215, 298, 715, 1046
PfoI	TCCNGGA	2 cut(s)	548, 1000
PinAI	ACCGGT	1 cut(s)	723
PkrI	GCNGC	6 cut(s)	622, 633, 1029, 1032, 1060, 1063
PpuMI	RGGWCCY	2 cut(s)	115, 1019
Psp5II	RGGWCCY	2 cut(s)	115, 1019
Psp6I	CCWGG	2 cut(s)	548, 1000
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	548, 1000
PspN4I	GGNNCC	3 cut(s)	79, 117, 1020
PspPI	GGNCC	5 cut(s)	115, 187, 563, 998, 1019
PspPPI	RGGWCCY	2 cut(s)	115, 1019
PstNI	CAGNNNCTG	2 cut(s)	1030, 1216
PsuI	RGATCY	2 cut(s)	77, 800
PvuII	CAGCTG	1 cut(s)	1030
RsaI	GTAC	3 cut(s)	449, 654, 834
RsaNI	GTAC	3 cut(s)	448, 653, 833
RseI	CAYNNNNRTG	1 cut(s)	1241
SaqAI	TTAA	4 cut(s)	255, 405, 737, 930
SatI	GCNGC	6 cut(s)	621, 632, 1028, 1031, 1059, 1062
Sau3AI	GATC	3 cut(s)	77, 208, 800
Sau96I	GGNCC	5 cut(s)	115, 187, 563, 998, 1019
ScaI	AGTACT	1 cut(s)	654
ScrFI	CCNGG	4 cut(s)	86, 87, 550, 1002
SfaNI	GCATC	6 cut(s)	256, 421, 464, 475, 554, 1096
SgrAI	CRCCGGYG	1 cut(s)	494
SinI	GGWCC	3 cut(s)	115, 998, 1019
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	1241
SmlI	CTYRAG	4 cut(s)	349, 736, 793, 1101
SmoI	CTYRAG	4 cut(s)	349, 736, 793, 1101
SpeI	ACTAGT	1 cut(s)	1343
SphI	GCATGC	1 cut(s)	492
Sse9I	AATT	6 cut(s)	472, 645, 1228, 1247, 1415, 1427
SsiI	CCGC	3 cut(s)	72, 400, 975
SspMI	CTAG	4 cut(s)	416, 459, 810, 1344
StyD4I	CCNGG	4 cut(s)	84, 85, 548, 1000
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	6 cut(s)	176, 1113, 1177, 1240, 1311, 1443
TaqI	TCGA	1 cut(s)	1131
TasI	AATT	6 cut(s)	472, 645, 1228, 1247, 1415, 1427
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	6 cut(s)	95, 104, 215, 298, 715, 1046
Tru1I	TTAA	4 cut(s)	255, 405, 737, 930
Tru9I	TTAA	4 cut(s)	255, 405, 737, 930
TseFI	GTSAC	2 cut(s)	10, 1144
TseI	GCWGC	6 cut(s)	620, 631, 1027, 1030, 1058, 1061
Tsp45I	GTSAC	2 cut(s)	10, 1144
TspDTI	ATGAA	7 cut(s)	543, 680, 771, 974, 1178, 1259, 1440
TspMI	CCCGGG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	736
VpaK11BI	GGWCC	3 cut(s)	115, 998, 1019
XagI	CCTNNNNNAGG	1 cut(s)	704
XapI	RAATTY	1 cut(s)	1415
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	287, 492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	1040
XspI	CTAG	4 cut(s)	416, 459, 810, 1344
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.